FvH4_3g11504

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000110
Physical Location & Seq
Forward (+)
6793435 .. 6795234
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11504.t1

Sequence Viewer

Length: 1800 bp
ATGGCTAATATGGCTATATCTGCAACGGACCTCTTAATTGGAAGAATTGTGGCAATTCTTGAGCTTGAAGGAACAACCATAACCGGTGCTCGTGATGAAGTTGAGGAGATTAAGCAGGAGTTTCTAAGCATCCAAGCTTTCCTTGCGGATGCGGGGACCAACACAGCAAAAACCAAAGGAGAGAAATTGTGGGTCGCAAGCATCAGAGACTTGGCCTATGATGTTGAAGATATTATTGATGAATTCATGTATCACATGTATGAGAAACAAAGTGGGGGTCGACTTTCAAGGGGGCTACAAAAAACCATTACCGCTCCCCAGAAGCTCTGGTTCAGGCGTAAAATTGCAAAGAAGTGTCAGAAACTTAATGAAATGATCAAAGCCATACCAGTGAGGAATCAAAGATATGGTGTTGGCCATCTAGGAGGAGCAGCTACATCTGAAGATATTCATAAATTGGTGCAGAACCAAGCGGAGTCCTCTATATTCATTATGGAAGACGAACTGGTTGGGATTGAAGTCAAGAAGCAAATACTAATGGGATGGCTCATGGATGAACAGAAACACCAAACTGTTATATCTGTGGTTGGCATGGGAGGTTCTGGAAAGACAACTCTAGCTGCCAAGGCCTTCTACAACGAAAGGGTAAAGGGACATTTCCATTGTTGTGCATGGATTACCGTTTCCCAAACTTATGATGTGGTACACTTATTTCGAAGCTTGATCAAGGAACTCTACAAATCAAGGAAGGAAGATATCCCTGCAAATTTGAATGCCATGAGCCGCATGGAATTGATAGAGTTACTAGTTAACTACTTGGTGTCTAAAAAATACATAGTTGTTCTGGATGACGTATGGGATATAAAAGTTTGGAGAGAAATAAAGGTAGCACTTCAAGATAGACAAATGGGAAGTCGAATCGTACTTACAACTCGAAATGAAGAAGTAGCATCCAATTTTTTTGGAGTTGAATGCCATGTTCACCATATTCAGCCCCTGCAAAAGAATGAGGCCTGGGAGCTCTTCAGCAAGAAAGCATTCTTAACTAATCAGCACAAAACTTGTCCAATTGAACTCGAGTCATTAGCTTGGGAACTTGTGCACAAGTGTGAAGGCCTTCCTTTGGCTATTGTGTCTTTAGGTGGTCTTATGTCTTCTAAGAAGTCCCTGGTTCAATGGGAGAAAGTCCGCAACAACCTAAATTCGCTTCTACGTAACAATTCATTGCTAGACCCTCTGAAAAACATCTTGTTGTTGAGTTTCAATGATTTGCCATCTCAACTGAAGAATTGCTTCCTCTACTGCTCTCTTTTCCCAGAAGATTATTTGATTAAGAGAAGAAGGCTCATTAATTTGTGGATAGCTGAAGGATTTGTCGAGCATGCGGAAAGGGTCACACCAGAAGAAGTTGCAGAAGACTATCTTATGGAGCTCTGTTTCCGCAACATGTTACAAATTGTACGGAAAAATGGAAGAGGATTGCCAAAACAAGTTAAGATGCATGATCTAATGCGAGAGCTTGCTTTGTTGACAGCCAAGGAGGAAAAGTTTGGTCTTGTTTACGACGGGAGAAAAGTAATGGAGGACATCTCAACCCGTCGTTTGGCGATTCACAGTATGGAAGGAGAAATCAAGCCATGCCCGGGTATGTCAAAGATTCGTTCTCTTCTTGTGTTTGCAACTAACAAGTCCTCATTGTCTTTCTTAAATACATTGCTTTCTCAATTCAAATTGTTGAGGAGTTGGAGGATGTCCAAATTGATAAAATGCCGGGTGCAGTTGTTTACTTGTTCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

600

Amino Acids

68.64

Weight (kDa)

9.02

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 12 - 92 3.2e-19 Rx N-terminal domain
NB-ARC PF00931 176 - 349 2.1e-47 NB-ARC domain
WHD_DRP PF23559 437 - 508 7.2e-22 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 280
AciI CCGC 8 cut(s) 146, 152, 312, 473, 784, 1189, 1385, 1441
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 3 cut(s) 242, 766, 1201
AcuI CTGAAG 4 cut(s) 462, 1009, 1304, 1386
AfaI GTAC 3 cut(s) 705, 924, 1461
AfiI CCNNNNNNNGG 3 cut(s) 1123, 1603, 1643
AflIII ACRYGT 2 cut(s) 255, 1446
AgeI ACCGGT 1 cut(s) 83
AhlI ACTAGT 1 cut(s) 805
AjnI CCWGG 2 cut(s) 1013, 1167
AleI CACNNNNGTG 1 cut(s) 1107
Alw21I GWGCWC 4 cut(s) 91, 1023, 1104, 1434
Alw26I GTCTC 1 cut(s) 201
Alw44I GTGCAC 1 cut(s) 1100
AlwNI CAGNNNCTG 1 cut(s) 997
Ama87I CYCGRG 2 cut(s) 1076, 1642
AoxI GGCC 5 cut(s) 213, 415, 627, 1011, 1114
ApaLI GTGCAC 1 cut(s) 1100
ApeKI GCWGC 2 cut(s) 431, 620
ApoI RAATTY 3 cut(s) 242, 766, 1201
ArsI GACNNNNNNTTYG 4 cut(s) 262, 294, 898, 930
AseI ATTAAT 1 cut(s) 1350
AsiGI ACCGGT 1 cut(s) 83
Asp700I GAANNNNTTC 4 cut(s) 447, 1037, 1116, 1292
AspS9I GGNCC 2 cut(s) 28, 156
AsuC2I CCSGG 3 cut(s) 1643, 1644, 1772
AsuHPI GGTGA 1 cut(s) 974
AsuII TTCGAA 1 cut(s) 715
AvaI CYCGRG 2 cut(s) 1076, 1642
AvaII GGWCC 2 cut(s) 28, 156
BaeGI GKGCMC 1 cut(s) 1104
BalI TGGCCA 1 cut(s) 417
BanII GRGCYC 2 cut(s) 1023, 1434
BauI CACGAG 1 cut(s) 90
BbsI GAAGAC 3 cut(s) 504, 1146, 1422
Bbv12I GWGCWC 4 cut(s) 91, 1023, 1104, 1434
BbvI GCAGC 2 cut(s) 443, 607
BccI CCATC 3 cut(s) 426, 537, 1282
BciT130I CCWGG 2 cut(s) 1015, 1169
BclI TGATCA 2 cut(s) 375, 723
BcnI CCSGG 3 cut(s) 1643, 1644, 1772
BcoDI GTCTC 1 cut(s) 201
BcuI ACTAGT 1 cut(s) 805
BfaI CTAG 4 cut(s) 422, 617, 806, 1229
BisI GCNGC 3 cut(s) 432, 621, 784
BlsI GCNGC 3 cut(s) 433, 622, 785
Bme1390I CCNGG 5 cut(s) 1015, 1169, 1643, 1644, 1772
Bme18I GGWCC 2 cut(s) 28, 156
BmeT110I CYCGRG 2 cut(s) 1076, 1642
BmgT120I GGNCC 2 cut(s) 28, 156
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 5 cut(s) 1015, 1169, 1643, 1644, 1772
BmsI GCATC 5 cut(s) 138, 139, 210, 959, 1488
BpiI GAAGAC 3 cut(s) 504, 1146, 1422
BplI GAGNNNNNCTC 2 cut(s) 1574, 1606
Bpu14I TTCGAA 1 cut(s) 715
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 3 cut(s) 1643, 1644, 1772
BsaAI YACGTR 1 cut(s) 1214
BsaJI CCNNGG 5 cut(s) 624, 1014, 1167, 1536, 1642
BsaWI WCCGGW 1 cut(s) 83
BsaXI ACNNNNNCTCC 2 cut(s) 1532, 1562
Bsc4I CCNNNNNNNGG 3 cut(s) 1123, 1603, 1643
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 389, 510
Bse3DI GCAATG 2 cut(s) 1223, 1712
BseBI CCWGG 2 cut(s) 1015, 1169
BseDI CCNNGG 5 cut(s) 624, 1014, 1167, 1536, 1642
BseGI GGATG 7 cut(s) 129, 154, 548, 559, 853, 950, 1755
BseLI CCNNNNNNNGG 3 cut(s) 1123, 1603, 1643
BseMI GCAATG 2 cut(s) 1223, 1712
BseNI ACTGG 2 cut(s) 389, 510
BseRI GAGGAG 3 cut(s) 119, 441, 1753
BseSI GKGCMC 1 cut(s) 1104
BseXI GCAGC 2 cut(s) 443, 607
BsgI GTGCAG 2 cut(s) 482, 1796
BshFI GGCC 5 cut(s) 215, 417, 629, 1013, 1116
BshTI ACCGGT 1 cut(s) 83
BsiHKAI GWGCWC 4 cut(s) 91, 1023, 1104, 1434
BsiHKCI CYCGRG 2 cut(s) 1076, 1642
BsiSI CCGG 3 cut(s) 84, 1643, 1771
BslFI GGGAC 3 cut(s) 169, 666, 1150
BslI CCNNNNNNNGG 3 cut(s) 1123, 1603, 1643
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 3 cut(s) 169, 666, 1150
BsmI GAATGC 3 cut(s) 778, 977, 1037
BsnI GGCC 5 cut(s) 215, 417, 629, 1013, 1116
BsoBI CYCGRG 2 cut(s) 1076, 1642
Bsp119I TTCGAA 1 cut(s) 715
Bsp1286I GDGCHC 4 cut(s) 91, 1023, 1104, 1434
Bsp143I GATC 3 cut(s) 375, 723, 1504
BspACI CCGC 8 cut(s) 146, 152, 312, 473, 784, 1189, 1385, 1441
BspANI GGCC 5 cut(s) 215, 417, 629, 1013, 1116
BspLI GGNNCC 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 1028
BspT104I TTCGAA 1 cut(s) 715
BsrBI CCGCTC 1 cut(s) 314
BsrDI GCAATG 2 cut(s) 1223, 1712
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 389, 510
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 5 cut(s) 624, 1014, 1167, 1536, 1642
BssMI GATC 3 cut(s) 375, 723, 1504
BssSI CACGAG 1 cut(s) 90
BssT1I CCWWGG 2 cut(s) 624, 1536
Bst2BI CACGAG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 1015, 1169
Bst4CI ACNGT 3 cut(s) 574, 682, 1616
Bst6I CTCTTC 3 cut(s) 1028, 1468, 1671
BstBAI YACGTR 1 cut(s) 1214
BstBI TTCGAA 1 cut(s) 715
BstC8I GCNNGC 3 cut(s) 199, 1383, 1521
BstDEI CTNAG 2 cut(s) 125, 1158
BstF5I GGATG 7 cut(s) 129, 154, 548, 559, 853, 950, 1755
BstKTI GATC 3 cut(s) 378, 726, 1507
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 3 cut(s) 375, 723, 1504
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 143, 626
BstNI CCWGG 2 cut(s) 1015, 1169
BstNSI RCATGY 3 cut(s) 259, 1385, 1450
BstSCI CCNGG 5 cut(s) 1013, 1167, 1641, 1642, 1770
BstSLI GKGCMC 1 cut(s) 1104
BstSNI TACGTA 1 cut(s) 1214
BstV1I GCAGC 2 cut(s) 443, 607
BstV2I GAAGAC 3 cut(s) 504, 1146, 1422
BsuRI GGCC 5 cut(s) 215, 417, 629, 1013, 1116
BtsCI GGATG 7 cut(s) 129, 154, 548, 559, 853, 950, 1755
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 3 cut(s) 199, 1383, 1521
CaiI CAGNNNCTG 1 cut(s) 997
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 28, 156
Cfr9I CCCGGG 1 cut(s) 1642
Csp6I GTAC 3 cut(s) 704, 923, 1460
CspAI ACCGGT 1 cut(s) 83
CviQI GTAC 3 cut(s) 704, 923, 1460
DdeI CTNAG 2 cut(s) 125, 1158
DpnI GATC 3 cut(s) 377, 725, 1506
DpnII GATC 3 cut(s) 375, 723, 1504
EaeI YGGCCR 1 cut(s) 415
Eam1104I CTCTTC 3 cut(s) 1028, 1468, 1671
EarI CTCTTC 3 cut(s) 1028, 1468, 1671
Ecl136II GAGCTC 2 cut(s) 1021, 1432
Eco105I TACGTA 1 cut(s) 1214
Eco130I CCWWGG 2 cut(s) 624, 1536
Eco147I AGGCCT 3 cut(s) 629, 1013, 1116
Eco24I GRGCYC 2 cut(s) 1023, 1434
Eco32I GATATC 1 cut(s) 757
Eco47I GGWCC 2 cut(s) 28, 156
Eco53kI GAGCTC 2 cut(s) 1021, 1432
Eco57I CTGAAG 4 cut(s) 462, 1009, 1304, 1386
Eco88I CYCGRG 2 cut(s) 1076, 1642
EcoICRI GAGCTC 2 cut(s) 1021, 1432
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 1013, 1167
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 624, 1536
EcoT22I ATGCAT 1 cut(s) 1503
EcoT38I GRGCYC 2 cut(s) 1023, 1434
ErhI CCWWGG 2 cut(s) 624, 1536
FalI AAGNNNNNCTT 6 cut(s) 126, 158, 1277, 1309, 1407, 1439
FaqI GGGAC 3 cut(s) 169, 666, 1150
FauI CCCGC 1 cut(s) 145
FbaI TGATCA 2 cut(s) 375, 723
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 432, 621, 784
FokI GGATG 7 cut(s) 116, 161, 555, 566, 860, 937, 1762
FriOI GRGCYC 2 cut(s) 1023, 1434
Fsp4HI GCNGC 3 cut(s) 432, 621, 784
FspBI CTAG 4 cut(s) 422, 617, 806, 1229
GluI GCNGC 3 cut(s) 432, 621, 784
HaeIII GGCC 5 cut(s) 215, 417, 629, 1013, 1116
HapII CCGG 3 cut(s) 84, 1643, 1771
HincII GTYRAC 3 cut(s) 281, 811, 1530
HindII GTYRAC 3 cut(s) 281, 811, 1530
HindIII AAGCTT 2 cut(s) 135, 718
HinfI GANTC 6 cut(s) 397, 476, 918, 1079, 1609, 1657
HpaI GTTAAC 1 cut(s) 811
HpaII CCGG 3 cut(s) 84, 1643, 1771
HphI GGTGA 1 cut(s) 974
Hpy166II GTNNAC 8 cut(s) 281, 706, 811, 982, 1102, 1530, 1561, 1785
Hpy188I TCNGA 4 cut(s) 206, 360, 442, 1239
Hpy188III TCNNGA 6 cut(s) 59, 92, 523, 603, 845, 896
Hpy8I GTNNAC 8 cut(s) 281, 706, 811, 982, 1102, 1530, 1561, 1785
Hpy99I CGWCG 2 cut(s) 1568, 1602
HpyAV CCTTC 8 cut(s) 62, 640, 742, 1106, 1127, 1335, 1361, 1616
HpyCH4III ACNGT 3 cut(s) 574, 682, 1616
HpyCH4IV ACGT 2 cut(s) 852, 1213
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 143, 626
HpyF3I CTNAG 2 cut(s) 125, 1158
HpySE526I ACGT 2 cut(s) 852, 1213
Ksp22I TGATCA 2 cut(s) 375, 723
KspAI GTTAAC 1 cut(s) 811
Kzo9I GATC 3 cut(s) 375, 723, 1504
LguI GCTCTTC 1 cut(s) 1028
LmnI GCTCC 4 cut(s) 319, 428, 1018, 1429
Lsp1109I GCAGC 2 cut(s) 443, 607
LweI GCATC 5 cut(s) 138, 139, 210, 959, 1488
MaeI CTAG 4 cut(s) 422, 617, 806, 1229
MaeII ACGT 2 cut(s) 852, 1213
MaeIII GTNAC 4 cut(s) 801, 1214, 1393, 1449
MalI GATC 3 cut(s) 377, 725, 1506
MbiI CCGCTC 1 cut(s) 314
MboI GATC 3 cut(s) 375, 723, 1504
MfeI CAATTG 1 cut(s) 1068
MhlI GDGCHC 4 cut(s) 91, 1023, 1104, 1434
MlsI TGGCCA 1 cut(s) 417
MluNI TGGCCA 1 cut(s) 417
MlyI GAGTC 2 cut(s) 485, 1088
MmeI TCCRAC 1 cut(s) 1724
Mox20I TGGCCA 1 cut(s) 417
Mph1103I ATGCAT 1 cut(s) 1503
MroXI GAANNNNTTC 4 cut(s) 447, 1037, 1116, 1292
MscI TGGCCA 1 cut(s) 417
MseI TTAA 9 cut(s) 35, 111, 366, 810, 1043, 1332, 1350, 1494, 1706
MslI CAYNNNNRTG 4 cut(s) 258, 389, 666, 1107
Msp20I TGGCCA 1 cut(s) 417
MspI CCGG 3 cut(s) 84, 1643, 1771
MspR9I CCNGG 5 cut(s) 1015, 1169, 1643, 1644, 1772
MunI CAATTG 1 cut(s) 1068
Mva1269I GAATGC 3 cut(s) 778, 977, 1037
MvaI CCWGG 2 cut(s) 1015, 1169
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 143, 626
NciI CCSGG 3 cut(s) 1643, 1644, 1772
NdeII GATC 3 cut(s) 375, 723, 1504
NlaIV GGNNCC 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 1393
NsiI ATGCAT 1 cut(s) 1503
NspI RCATGY 3 cut(s) 259, 1385, 1450
NspV TTCGAA 1 cut(s) 715
OliI CACNNNNGTG 1 cut(s) 1107
PaeI GCATGC 1 cut(s) 1385
PaeR7I CTCGAG 1 cut(s) 1076
PceI AGGCCT 3 cut(s) 629, 1013, 1116
PciI ACATGT 2 cut(s) 255, 1446
PciSI GCTCTTC 1 cut(s) 1028
PctI GAATGC 3 cut(s) 778, 977, 1037
PdmI GAANNNNTTC 4 cut(s) 447, 1037, 1116, 1292
PfeI GAWTC 4 cut(s) 397, 918, 1609, 1657
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 3 cut(s) 433, 622, 785
PleI GAGTC 2 cut(s) 484, 1087
PpsI GAGTC 2 cut(s) 484, 1087
Ppu21I YACGTR 1 cut(s) 1214
PscI ACATGT 2 cut(s) 255, 1446
PshBI ATTAAT 1 cut(s) 1350
Psp124BI GAGCTC 2 cut(s) 1023, 1434
Psp6I CCWGG 2 cut(s) 1013, 1167
PspGI CCWGG 2 cut(s) 1013, 1167
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 2 cut(s) 28, 156
PspXI VCTCGAGB 1 cut(s) 1076
PstNI CAGNNNCTG 1 cut(s) 997
RsaI GTAC 3 cut(s) 705, 924, 1461
RsaNI GTAC 3 cut(s) 704, 923, 1460
RseI CAYNNNNRTG 4 cut(s) 258, 389, 666, 1107
SacI GAGCTC 2 cut(s) 1023, 1434
SalI GTCGAC 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 1028
SaqAI TTAA 9 cut(s) 35, 111, 366, 810, 1043, 1332, 1350, 1494, 1706
SatI GCNGC 3 cut(s) 432, 621, 784
Sau3AI GATC 3 cut(s) 375, 723, 1504
Sau96I GGNCC 2 cut(s) 28, 156
SchI GAGTC 2 cut(s) 485, 1088
ScrFI CCNGG 5 cut(s) 1015, 1169, 1643, 1644, 1772
SduI GDGCHC 4 cut(s) 91, 1023, 1104, 1434
SfaNI GCATC 5 cut(s) 138, 139, 210, 959, 1488
Sfr274I CTCGAG 1 cut(s) 1076
SfuI TTCGAA 1 cut(s) 715
SinI GGWCC 2 cut(s) 28, 156
SlaI CTCGAG 1 cut(s) 1076
SmaI CCCGGG 1 cut(s) 1644
SmiMI CAYNNNNRTG 4 cut(s) 258, 389, 666, 1107
SmlI CTYRAG 2 cut(s) 59, 1076
SmoI CTYRAG 2 cut(s) 59, 1076
SnaBI TACGTA 1 cut(s) 1214
SpeI ACTAGT 1 cut(s) 805
SphI GCATGC 1 cut(s) 1385
SseBI AGGCCT 3 cut(s) 629, 1013, 1116
SsiI CCGC 8 cut(s) 146, 152, 312, 473, 784, 1189, 1385, 1441
SspMI CTAG 4 cut(s) 422, 617, 806, 1229
SstI GAGCTC 2 cut(s) 1023, 1434
StuI AGGCCT 3 cut(s) 629, 1013, 1116
StyD4I CCNGG 5 cut(s) 1013, 1167, 1641, 1642, 1770
StyI CCWWGG 2 cut(s) 624, 1536
TaaI ACNGT 3 cut(s) 574, 682, 1616
TaiI ACGT 2 cut(s) 855, 1216
TaqI TCGA 6 cut(s) 280, 715, 916, 934, 1077, 1377
TauI GCSGC 1 cut(s) 786
TfiI GAWTC 4 cut(s) 397, 918, 1609, 1657
Tru1I TTAA 9 cut(s) 35, 111, 366, 810, 1043, 1332, 1350, 1494, 1706
Tru9I TTAA 9 cut(s) 35, 111, 366, 810, 1043, 1332, 1350, 1494, 1706
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 1 cut(s) 1393
TseI GCWGC 2 cut(s) 431, 620
Tsp45I GTSAC 1 cut(s) 1393
TspDTI ATGAA 9 cut(s) 111, 235, 255, 384, 440, 478, 570, 954, 1212
TspGWI ACGGA 2 cut(s) 41, 1477
TspMI CCCGGG 1 cut(s) 1642
TspRI CASTG 1 cut(s) 396
VneI GTGCAC 1 cut(s) 1100
VpaK11BI GGWCC 2 cut(s) 28, 156
VspI ATTAAT 1 cut(s) 1350
XapI RAATTY 3 cut(s) 242, 766, 1201
XceI RCATGY 3 cut(s) 259, 1385, 1450
XcmI CCANNNNNNNNNTGG 1 cut(s) 784
XhoI CTCGAG 1 cut(s) 1076
XmaI CCCGGG 1 cut(s) 1642
XmiI GTMKAC 1 cut(s) 280
XmnI GAANNNNTTC 4 cut(s) 447, 1037, 1116, 1292
XspI CTAG 4 cut(s) 422, 617, 806, 1229
Zsp2I ATGCAT 1 cut(s) 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.