Rh5CG146400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000110
Physical Location & Seq
Forward (+)
13177137 .. 13180615
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG146400.1

Sequence Viewer

Length: 819 bp
ATGGCCTCATTAGTAACGGACCTCTTAATTGGAAAACTTGCGACAATTCTTGAGAACGAAGGAACAGCCATAGCCGGTATTCGTGATGAAGTTGATAAGATCAAGGAGGAGTTTCTAAGCATGAAAGCTTTCCTAGTGGATGCGGAGGCCAACAAAGCAAAAACAGAAGGAGAGAAATTGTGGGTTGCAAGAATCAGAAACCTAGCCTATGATGTTGAAGACATCATTGATGAATTCATGTATCACATGTATGAGAAGCAAAGTGGGGGTCGACTTTCAAGGGGGCTACACAAAACCATTCGCGCTCCATGTAATCTTTGGTTCAGGCATAAAATTGCAAAGAAGTTGCAGAAAATTACTGAAATGATCAAAGCCATTCCAGAGAGGAATCAAAGATACAGTGTTGGCCTTGTTGGAGGAGCAACTACATCTGAAGATATTCACAAATTGTTGCAGAGCCAAGCGGAGTCTTCGTTTTTCATTAGGGAAGACGAACTCGTTGGGATTAAAGGCAAGAAGCAAATACTAATGGGATGGCTCATGGATGAAGAGCAACACCAAACTGTTATATCTGTGTTTGGCATGGGAGGTTCTGGGAAGACAACTCTAGTTGCCAAGGTCTTCAACAGTGAAAAGGATATGGCACCTGAAGCCGGCGACTCTGGAAGGCTCCCTGAGACGGTAAGCTGTGGATTGTCCCTCGAGGCGGGCAGCTTCGATGTGCTCCTTGAGGCAGACAATATAGGCAAGGCCGCCTTGCTCTTCTTTCCAACAACCTTACGCACCACCGAATCAGTTGGCCTGTCCTCGACAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

272

Amino Acids

30.03

Weight (kDa)

5.68

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 90 2.3e-23 Rx N-terminal domain
NB-ARC PF00931 173 - 212 4.6e-08 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 701
AccB1I GGYRCC 1 cut(s) 643
AccI GTMKAC 1 cut(s) 271
AccII CGCG 1 cut(s) 303
AciI CCGC 4 cut(s) 143, 464, 707, 753
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 2 cut(s) 453, 669
AfiI CCNNNNNNNGG 3 cut(s) 653, 679, 706
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 218, 279, 625
AluBI AGCT 3 cut(s) 128, 687, 714
AluI AGCT 3 cut(s) 128, 687, 714
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 701
AoxI GGCC 5 cut(s) 3, 147, 406, 750, 799
ApeKI GCWGC 1 cut(s) 711
ApoI RAATTY 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 2 cut(s) 128, 438
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 701
AvaII GGWCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 643
BbsI GAAGAC 5 cut(s) 225, 462, 495, 605, 613
Bbv12I GWGCWC 1 cut(s) 726
BbvI GCAGC 1 cut(s) 723
BccI CCATC 1 cut(s) 528
BclI TGATCA 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 3 cut(s) 134, 203, 608
BisI GCNGC 2 cut(s) 712, 753
BlsI GCNGC 2 cut(s) 713, 754
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 701
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 2 cut(s) 645, 671
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 5 cut(s) 225, 462, 495, 605, 613
BpuEI CTTGAG 2 cut(s) 71, 749
BsaJI CCNNGG 1 cut(s) 615
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 3 cut(s) 653, 679, 706
Bse118I RCCGGY 2 cut(s) 74, 653
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 3 cut(s) 145, 539, 550
BseLI CCNNNNNNNGG 3 cut(s) 653, 679, 706
BseMII CTCAG 1 cut(s) 666
BseRI GAGGAG 2 cut(s) 122, 432
BseXI GCAGC 1 cut(s) 723
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 5 cut(s) 5, 149, 408, 752, 801
BshNI GGYRCC 1 cut(s) 643
BsiHKAI GWGCWC 1 cut(s) 726
BsiHKCI CYCGRG 1 cut(s) 701
BsiSI CCGG 2 cut(s) 75, 654
BslFI GGGAC 1 cut(s) 682
BslI CCNNNNNNNGG 3 cut(s) 653, 679, 706
BsmAI GTCTC 1 cut(s) 671
BsmBI CGTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 682
BsnI GGCC 5 cut(s) 5, 149, 408, 752, 801
BsoBI CYCGRG 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 726
Bsp143I GATC 2 cut(s) 99, 366
BspACI CCGC 4 cut(s) 143, 464, 707, 753
BspANI GGCC 5 cut(s) 5, 149, 408, 752, 801
BspCNI CTCAG 1 cut(s) 667
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 645, 671
BspQI GCTCTTC 2 cut(s) 543, 767
BspT107I GGYRCC 1 cut(s) 643
BsrFI RCCGGY 2 cut(s) 74, 653
BssAI RCCGGY 2 cut(s) 74, 653
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 2 cut(s) 99, 366
BssT1I CCWWGG 1 cut(s) 615
Bst4CI ACNGT 5 cut(s) 401, 565, 629, 682, 814
Bst6I CTCTTC 2 cut(s) 543, 767
BstC8I GCNNGC 2 cut(s) 655, 709
BstDEI CTNAG 2 cut(s) 116, 675
BstF5I GGATG 3 cut(s) 145, 539, 550
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 2 cut(s) 102, 369
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 2 cut(s) 99, 366
BstMWI GCNNNNNNNGC 2 cut(s) 155, 650
BstNSI RCATGY 1 cut(s) 250
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 723
BstV2I GAAGAC 5 cut(s) 225, 462, 495, 605, 613
BsuRI GGCC 5 cut(s) 5, 149, 408, 752, 801
BtsCI GGATG 3 cut(s) 145, 539, 550
BtsIMutI CAGTG 2 cut(s) 406, 634
Cac8I GCNNGC 2 cut(s) 655, 709
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 2 cut(s) 74, 653
Cfr13I GGNCC 1 cut(s) 19
CviAII CATG 6 cut(s) 121, 238, 247, 309, 541, 583
DdeI CTNAG 2 cut(s) 116, 675
DpnI GATC 2 cut(s) 101, 368
DpnII GATC 2 cut(s) 99, 366
Eam1104I CTCTTC 2 cut(s) 543, 767
EarI CTCTTC 2 cut(s) 543, 767
Eco130I CCWWGG 1 cut(s) 615
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 453, 669
Eco88I CYCGRG 1 cut(s) 701
EcoRI GAATTC 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 615
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 6 cut(s) 124, 241, 250, 312, 544, 586
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 1 cut(s) 682
FatI CATG 6 cut(s) 120, 237, 246, 308, 540, 582
FauI CCCGC 1 cut(s) 700
FbaI TGATCA 1 cut(s) 366
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 712, 753
FokI GGATG 3 cut(s) 152, 546, 557
Fsp4HI GCNGC 2 cut(s) 712, 753
FspBI CTAG 3 cut(s) 134, 203, 608
GlaI GCGC 1 cut(s) 304
GluI GCNGC 2 cut(s) 712, 753
HaeIII GGCC 5 cut(s) 5, 149, 408, 752, 801
HapII CCGG 2 cut(s) 75, 654
HhaI GCGC 1 cut(s) 305
Hin1II CATG 6 cut(s) 124, 241, 250, 312, 544, 586
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 5 cut(s) 192, 388, 467, 659, 791
HpaII CCGG 2 cut(s) 75, 654
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 197, 433
Hpy188III TCNNGA 4 cut(s) 50, 83, 380, 663
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 3 cut(s) 53, 161, 660
HpyCH4III ACNGT 5 cut(s) 401, 565, 629, 682, 814
HpyCH4V TGCA 4 cut(s) 188, 338, 349, 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 650
HpyF3I CTNAG 2 cut(s) 116, 675
Hsp92II CATG 6 cut(s) 124, 241, 250, 312, 544, 586
HspAI GCGC 1 cut(s) 303
KroI GCCGGC 1 cut(s) 653
KroNI GCCGGC 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 2 cut(s) 99, 366
LguI GCTCTTC 2 cut(s) 543, 767
LmnI GCTCC 4 cut(s) 310, 419, 675, 729
LpnPI CCDG 9 cut(s) 88, 310, 393, 579, 648, 660, 667, 687, 815
Lsp1109I GCAGC 1 cut(s) 723
LweI GCATC 1 cut(s) 130
MaeI CTAG 3 cut(s) 134, 203, 608
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 101, 368
MboI GATC 2 cut(s) 99, 366
MboII GAAGA 8 cut(s) 230, 446, 462, 500, 560, 610, 613, 754
MhlI GDGCHC 1 cut(s) 726
MluCI AATT 7 cut(s) 27, 45, 176, 233, 333, 354, 446
MlyI GAGTC 2 cut(s) 476, 653
MmeI TCCRAC 2 cut(s) 394, 794
MroNI GCCGGC 1 cut(s) 653
MroXI GAANNNNTTC 2 cut(s) 128, 438
MseI TTAA 2 cut(s) 26, 507
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 2 cut(s) 75, 654
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 155, 650
NaeI GCCGGC 1 cut(s) 655
NdeII GATC 2 cut(s) 99, 366
NgoMIV GCCGGC 1 cut(s) 653
NlaIII CATG 6 cut(s) 124, 241, 250, 312, 544, 586
NlaIV GGNNCC 2 cut(s) 645, 671
NspI RCATGY 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 701
PciI ACATGT 1 cut(s) 246
PciSI GCTCTTC 2 cut(s) 543, 767
PdiI GCCGGC 1 cut(s) 655
PdmI GAANNNNTTC 2 cut(s) 128, 438
PfeI GAWTC 3 cut(s) 192, 388, 791
PkrI GCNGC 2 cut(s) 713, 754
PleI GAGTC 2 cut(s) 475, 653
PpsI GAGTC 2 cut(s) 475, 653
PscI ACATGT 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 645, 671
PspPI GGNCC 1 cut(s) 19
PspXI VCTCGAGB 1 cut(s) 701
RseI CAYNNNNRTG 1 cut(s) 249
SalI GTCGAC 1 cut(s) 270
SapI GCTCTTC 2 cut(s) 543, 767
SaqAI TTAA 2 cut(s) 26, 507
SatI GCNGC 2 cut(s) 712, 753
Sau3AI GATC 2 cut(s) 99, 366
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 2 cut(s) 476, 653
SduI GDGCHC 1 cut(s) 726
SetI ASST 9 cut(s) 24, 130, 204, 592, 621, 649, 689, 716, 779
SfaNI GCATC 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 701
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 701
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 3 cut(s) 50, 701, 728
SmoI CTYRAG 3 cut(s) 50, 701, 728
Sse9I AATT 7 cut(s) 27, 45, 176, 233, 333, 354, 446
SsiI CCGC 4 cut(s) 143, 464, 707, 753
SspMI CTAG 3 cut(s) 134, 203, 608
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 5 cut(s) 401, 565, 629, 682, 814
TaqI TCGA 4 cut(s) 271, 702, 717, 809
TasI AATT 7 cut(s) 27, 45, 176, 233, 333, 354, 446
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 3 cut(s) 192, 388, 791
Tru1I TTAA 2 cut(s) 26, 507
Tru9I TTAA 2 cut(s) 26, 507
TscAI CASTG 2 cut(s) 406, 634
TseI GCWGC 1 cut(s) 711
TspDTI ATGAA 6 cut(s) 102, 137, 226, 246, 469, 561
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 2 cut(s) 406, 634
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XhoI CTCGAG 1 cut(s) 701
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 2 cut(s) 128, 438
XspI CTAG 3 cut(s) 134, 203, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.