Rmu_co8390397.1_g000001

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8390397.1
OG0000110
Physical Location & Seq
Forward (+)
159 .. 1214
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8390397.1_g000001.1.cds

Sequence Viewer

Length: 954 bp
atgagccgcatagaattgctagagttactagttaactacttggagtccagaaaatacctagttgttctagatgacgtgtgggatataaaagtatggagagaaataaaggtaccacttcaagatagacaccttggaagccgggtcgtactcacaactcgaaatgaagaagtagcatccaactcttatggagttgaaagctatatttaccgtattcagcccctgcaaaataaggaggcttgggaactcttcagtaggaaagcattctcaactaagcaacacaaaacttgtccaactgaactgaagtcattagcctgccaacttgtggagaagtgtgaaggccttcctctcggtattgtggctttaggtggtcttatgtcttctaagaagtcgctggatcaatggcaacaagtctgcaacaacttgaattggtatctacataacaattcatcgctagatcctgtgagaaacattttgttgctgagtttcaatgatttgccatctcaactgaagcattgcttcctctattgttctcttttccctgaagattatctatttaaaagaaaaaggctgactagattgtggatagcggaaggatttgttgaaaatatgaaaggggtcacgcccgaagaagttgcagatggctatcttcgggaactctgcttccttagcatgttacaggttgcagatgactttgtttctgtaacatcttcgggaacatcttcgggaaggccgaaaaaatataagatgcatgatctgatgcgagagctttctttgtcgacagccgaaaaagaaaagtttggttatgtatacaacgggagagaagtaatggaagagatctcaacccgtcgcttgtcaattcacagaatggaaggagaaattaaatcatggcgggacttggaggatgtccaaattgataatctgccgggtgcagttgtttacttgttcaacttgaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

318

Amino Acids

36.98

Weight (kDa)

7.01

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 109
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 2 cut(s) 776, 807
AciI CCGC 3 cut(s) 7, 587, 889
AclWI GGATC 2 cut(s) 402, 449
AcuI CTGAAG 4 cut(s) 232, 320, 527, 561
AfaI GTAC 2 cut(s) 111, 147
AfiI CCNNNNNNNGG 1 cut(s) 322
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 6 cut(s) 119, 194, 424, 487, 602, 946
AhlI ACTAGT 1 cut(s) 28
AjiI CACGTC 1 cut(s) 76
AloI GAACNNNNNNTCC 2 cut(s) 645, 677
AluBI AGCT 2 cut(s) 198, 766
AluI AGCT 2 cut(s) 198, 766
AlwI GGATC 2 cut(s) 402, 449
AlwNI CAGNNNCTG 1 cut(s) 220
AoxI GGCC 2 cut(s) 337, 728
Asp700I GAANNNNTTC 3 cut(s) 260, 339, 718
Asp718I GGTACC 1 cut(s) 109
AsuC2I CCSGG 2 cut(s) 140, 924
BanI GGYRCC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 369
BccI CCATC 2 cut(s) 505, 632
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BcnI CCSGG 2 cut(s) 140, 924
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 6 cut(s) 20, 29, 59, 68, 452, 573
BglII AGATCT 1 cut(s) 834
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 140, 924
BmgBI CACGTC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 140, 924
BmsI GCATC 3 cut(s) 182, 735, 747
BpiI GAAGAC 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 665
BpuMI CCSGG 2 cut(s) 140, 924
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse3DI GCAATG 1 cut(s) 511
Bse8I GATNNNNATC 1 cut(s) 642
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 173, 907
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 470
BsgI GTGCAG 1 cut(s) 948
BshFI GGCC 2 cut(s) 339, 730
BshNI GGYRCC 1 cut(s) 109
BsiSI CCGG 2 cut(s) 139, 923
BslFI GGGAC 1 cut(s) 905
BslI CCNNNNNNNGG 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 905
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 2 cut(s) 339, 730
Bsp143I GATC 4 cut(s) 394, 454, 751, 834
BspACI CCGC 3 cut(s) 7, 587, 889
BspANI GGCC 2 cut(s) 339, 730
BspCNI CTCAG 1 cut(s) 471
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 2 cut(s) 402, 449
BspT107I GGYRCC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 511
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 4 cut(s) 394, 454, 751, 834
BssNAI GTATAC 1 cut(s) 808
BssT1I CCWWGG 1 cut(s) 130
Bst1107I GTATAC 1 cut(s) 808
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 251, 825
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 4 cut(s) 270, 381, 479, 665
BstF5I GGATG 2 cut(s) 173, 907
BstKTI GATC 4 cut(s) 397, 457, 754, 837
BstMBI GATC 4 cut(s) 394, 454, 751, 834
BstMWI GCNNNNNNNGC 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 2 cut(s) 138, 922
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 2 cut(s) 454, 834
BstYI RGATCY 2 cut(s) 454, 834
BstZ17I GTATAC 1 cut(s) 808
BsuRI GGCC 2 cut(s) 339, 730
BtgZI GCGATG 1 cut(s) 432
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 2 cut(s) 173, 907
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 220
Csp6I GTAC 2 cut(s) 110, 146
CviAII CATG 3 cut(s) 670, 749, 885
CviQI GTAC 2 cut(s) 110, 146
DdeI CTNAG 4 cut(s) 270, 381, 479, 665
DpnI GATC 4 cut(s) 396, 456, 753, 836
DpnII GATC 4 cut(s) 394, 454, 751, 834
DraI TTTAAA 1 cut(s) 556
Eam1104I CTCTTC 2 cut(s) 251, 825
EarI CTCTTC 2 cut(s) 251, 825
Eco130I CCWWGG 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 339
Eco57I CTGAAG 4 cut(s) 232, 320, 527, 561
EcoT14I CCWWGG 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 750
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 3 cut(s) 673, 752, 888
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 1 cut(s) 905
FatI CATG 3 cut(s) 669, 748, 884
FauI CCCGC 1 cut(s) 882
FblI GTMKAC 2 cut(s) 776, 807
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 2 cut(s) 160, 914
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 6 cut(s) 20, 29, 59, 68, 452, 573
GluI GCNGC 1 cut(s) 7
HaeIII GGCC 2 cut(s) 339, 730
HapII CCGG 2 cut(s) 139, 923
Hin1II CATG 3 cut(s) 673, 752, 888
HincII GTYRAC 2 cut(s) 34, 777
HindII GTYRAC 2 cut(s) 34, 777
HinfI GANTC 1 cut(s) 44
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 2 cut(s) 139, 923
Hpy166II GTNNAC 4 cut(s) 34, 777, 808, 937
Hpy188I TCNGA 1 cut(s) 756
Hpy188III TCNNGA 6 cut(s) 48, 68, 119, 650, 711, 723
Hpy8I GTNNAC 4 cut(s) 34, 777, 808, 937
Hpy99I CGWCG 1 cut(s) 849
HpyAV CCTTC 5 cut(s) 329, 350, 584, 720, 863
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 6 cut(s) 223, 414, 635, 683, 748, 929
HpyF10VI GCNNNNNNNGC 1 cut(s) 666
HpyF3I CTNAG 4 cut(s) 270, 381, 479, 665
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 673, 752, 888
KpnI GGTACC 1 cut(s) 113
KspAI GTTAAC 1 cut(s) 34
Kzo9I GATC 4 cut(s) 394, 454, 751, 834
LpnPI CCDG 9 cut(s) 61, 152, 233, 325, 377, 471, 552, 662, 936
LweI GCATC 3 cut(s) 182, 735, 747
MaeI CTAG 6 cut(s) 20, 29, 59, 68, 452, 573
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 4 cut(s) 24, 616, 672, 700
MalI GATC 4 cut(s) 396, 456, 753, 836
MboI GATC 4 cut(s) 394, 454, 751, 834
MboII GAAGA 9 cut(s) 176, 238, 369, 554, 638, 638, 699, 711, 842
MflI RGATCY 2 cut(s) 454, 834
MluCI AATT 6 cut(s) 14, 424, 442, 855, 876, 909
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 2 cut(s) 201, 314
MnlI CCTC 4 cut(s) 226, 354, 530, 892
Mph1103I ATGCAT 1 cut(s) 750
MroXI GAANNNNTTC 3 cut(s) 260, 339, 718
MseI TTAA 3 cut(s) 33, 555, 879
MspI CCGG 2 cut(s) 139, 923
MspR9I CCNGG 2 cut(s) 140, 924
Mva1269I GAATGC 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 666
NciI CCSGG 2 cut(s) 140, 924
NdeII GATC 4 cut(s) 394, 454, 751, 834
NlaIII CATG 3 cut(s) 673, 752, 888
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 616
NsiI ATGCAT 1 cut(s) 750
NspI RCATGY 1 cut(s) 673
PceI AGGCCT 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 728
PctI GAATGC 1 cut(s) 260
PdmI GAANNNNTTC 3 cut(s) 260, 339, 718
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 220
PsuI RGATCY 2 cut(s) 454, 834
RsaI GTAC 2 cut(s) 111, 147
RsaNI GTAC 2 cut(s) 110, 146
SalI GTCGAC 1 cut(s) 775
SaqAI TTAA 3 cut(s) 33, 555, 879
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 4 cut(s) 394, 454, 751, 834
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 2 cut(s) 140, 924
SetI ASST 8 cut(s) 60, 78, 111, 132, 200, 367, 681, 768
SfaNI GCATC 3 cut(s) 182, 735, 747
SmlI CTYRAG 1 cut(s) 949
SmoI CTYRAG 1 cut(s) 949
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 6 cut(s) 14, 424, 442, 855, 876, 909
SseBI AGGCCT 1 cut(s) 339
SsiI CCGC 3 cut(s) 7, 587, 889
SspMI CTAG 6 cut(s) 20, 29, 59, 68, 452, 573
StuI AGGCCT 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 138, 922
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 157, 776
TasI AATT 6 cut(s) 14, 424, 442, 855, 876, 909
TauI GCSGC 1 cut(s) 9
Tru1I TTAA 3 cut(s) 33, 555, 879
Tru9I TTAA 3 cut(s) 33, 555, 879
TseFI GTSAC 1 cut(s) 616
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 177, 435, 623
Van91I CCANNNNNTGG 1 cut(s) 322
XbaI TCTAGA 1 cut(s) 67
XceI RCATGY 1 cut(s) 673
XmiI GTMKAC 2 cut(s) 776, 807
XmnI GAANNNNTTC 3 cut(s) 260, 339, 718
XspI CTAG 6 cut(s) 20, 29, 59, 68, 452, 573
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.