MD00G1207800.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000110
Physical Location & Seq
Forward (+)
50523248 .. 50526795
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1207800.v1.1.491

Sequence Viewer

Length: 2235 bp
ATGTCAAAGCTTCGCTGCTTTTTTGTCTTTGGCGCTGGCATATTTATGTTCAAGAAATTGCCTTCTGGATTCAAGTTGTTGAGAGTTCTATATTTGGAGAATGCTCCAATTGAAAGATTTCCAGATGAACTAGTGTACTTGTTCAACTTAAGATATTTAAATTTGAAGGGAACTTTAATTGAGGAGCTTCCAGAATCCATGGGACGGCTGCGCAACCTTCAAACCTTGAACATCCGTGACAGTAAGATAAAGGCACTTCCAAAAGCAATCTCCAAGTTAGTAAACCTACGCCATCTAATCATGTATTGTTACGCTGTTGATTTGATGGCCTTTAGATTTCTCAATGGGACAAAAGCAGCATCCGATCTAAGTACATTACAGAAACTGCAAGTTTTGCAATCTGTTGAATCAGAAGCAAAGATTATTAAGGGCATCAGGAATATGACCCAACTTACAAGCCTTGGTATTACAAATGTGAAAGCATGTGACGAGATGGACCTCTGTGACTCCCTTCAAAAGTTAGAGCTCCTTCACTCTTTGTTTTTAATGGCTAGTGATGAAGAGGGGTTTCTTCAAGTTAATGCACTACATAACCTGACACGTATGTGTCTACATTGGTCTAGACTTGAAGAAGATCTGCTGCCTCACATTCAAGCATTGCCGAATCTTGAAAGGCTTACCCTATCTAATGCATATGTTGGCGAAAATCTGTGTTTCTCCAGAGGCTTCATAAAGCTTAAGCATTTGCTGTTGGGCAGCTTCTCGGTATTGAATAGTATAACTATAGAGAAAGGGGCGATGCCAAATCTCCAGGTCTTAGACATTGGGAACTGCATGGGGTTAAAGGCATTGCCGCAGGGCATGGAGTTCCTTGCTAACGTAGAACGCCTGGATCTGTATTCTGTTCCAATGCAACTTATAGAGTCCGTAAGAGGAGGCATGGATCATCCAAAGGTACAACATATTCCTGAAATCCACCTGTATTATGAGAGAGAAAATATGTGGTGTCATGAAAGCTTTTCTGGTATTCACTCAAGTATCCGAGCCCGCCAGAAAGCAATCCCGACCGGGTCGGGGCGAATTCGAGGCCCAATGAGCAGCATCTTGTTGCTTAGTTTCAACAATTTGCCCAACCGGTTGAAGCCATGTTTCCTATACTGTGCCCTTTTCCCAGAAGATTATCTCATCAAAAGAAAAAGGTTGATCAGGTTGTGGATAGCTGAAGGGTTTGTTGAACCAATTGATGGGATCACACCAAAAGAAGTTGCAGAGGGTTATCTTGTGGAACTTATTGTTCGTAGCATGCTACAAGTTGAAAAGCATGGAGCTGGAGGACTAAGAGCATGTAAGATGCATGATCTTGTGCGTGAGCTTGCTTTGTCGATATCAAAAAAGGAAAAGTTCGGTGCTACGTGTGTTTCCAGAGAAATAGTAGATAAAGCTGAAATCCGCCGATTGTCAATTCAAACAACTGAAAGAGAAATTAATTCTTGCACGGGTATGTCAGAGCTTCGCTCCTTTCTTGTCTTTGGCGCGTTAGAGAAATTGCCTTCTGGATTCGAGTTGTTGAGAGTTCTAGATGTGCAGGATGCTCCAATTGATAGATTTCCAGATGAACTAGTGTACTTGTTCAACTTAAGATATTTAAATTTGAAGAGAACTTTGATTGACGAGCTTCCAGAATCCATCGGACGACTTCGCAACCTTCAAACCTTGATCATCAGTAACAGTAAGATAAAGGCACTTCCAAAAGCAATCTCCAAGTTAGTAAACCTACGCCATCTAATCATGTTTCGTTACACTGGTGACCATTATGGCTTTATATATCTCAATGGGACAAAAGCAGCATCCGATCTAAGTAAATTACAGAAACCGCAAGTTTTGCATTCCGTTGAATCAGAAGGAAAGATAATTAAAGGCATCAGGAATATGACCCAACTTACAAGCCTCGGTATTACAAATGTGAAAGCAAGTGACGAGATGGACCTCTGTGACTCCCTTCAAAAGTTAGAGCTCCTTCACAATTTGTTTTTTAATGGCTGGTGTGATGAAGAGGAGTTTCTTCAAGTTAATTTGACTCCTCCAGACCTTCAAATTGTTAATTTGACTGGAAAACTAGAAAAGGTACCTCTTTGGTTAGGTTCACTCCATAACCTGACACGTATTTATCTACGTTGGTCTAGACTTGAAGAAGACGTGCTACCTCACATTCAAGCAAGCATTGCCGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

745

Amino Acids

84.74

Weight (kDa)

8.63

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 3 - 204 9.4e-28 Leucine-rich repeat region
LRR_8 PF13855 49 - 100 6.8e-06 Leucine rich repeat
WHD_DRP PF23559 389 - 459 3.8e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 504 - 733 2.1e-31 Leucine-rich repeat region
LRR_8 PF13855 545 - 597 6.2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 212
Acc65I GGTACC 1 cut(s) 2125
AccB1I GGYRCC 1 cut(s) 2125
AccB7I CCANNNNNTGG 1 cut(s) 1244
AccI GTMKAC 1 cut(s) 610
AccII CGCG 1 cut(s) 1535
AciI CCGC 4 cut(s) 854, 1048, 1450, 1874
AclWI GGATC 3 cut(s) 900, 951, 1256
AcsI RAATTY 3 cut(s) 160, 1080, 1648
AcuI CTGAAG 1 cut(s) 1242
AfaI GTAC 5 cut(s) 137, 373, 957, 1625, 2127
AfiI CCNNNNNNNGG 3 cut(s) 204, 1074, 1244
AflII CTTAAG 3 cut(s) 148, 737, 1636
AflIII ACRYGT 3 cut(s) 599, 1412, 2159
AgeI ACCGGT 1 cut(s) 1134
AhlI ACTAGT 2 cut(s) 130, 1618
AjiI CACGTC 1 cut(s) 2197
AjnI CCWGG 2 cut(s) 810, 888
AleI CACNNNNGTG 1 cut(s) 604
Alw21I GWGCWC 2 cut(s) 528, 2016
AlwI GGATC 3 cut(s) 900, 951, 1256
AlwNI CAGNNNCTG 1 cut(s) 385
AoxI GGCC 2 cut(s) 327, 1087
ApeKI GCWGC 7 cut(s) 15, 208, 356, 640, 756, 1098, 1844
ApoI RAATTY 3 cut(s) 160, 1080, 1648
AseI ATTAAT 1 cut(s) 1485
AsiGI ACCGGT 1 cut(s) 1134
Asp700I GAANNNNTTC 1 cut(s) 117
Asp718I GGTACC 1 cut(s) 2125
AspLEI GCGC 3 cut(s) 35, 213, 1535
AspS9I GGNCC 3 cut(s) 496, 1088, 1984
AsuC2I CCSGG 1 cut(s) 1069
AsuHPI GGTGA 1 cut(s) 1817
AvaII GGWCC 2 cut(s) 496, 1984
BaeGI GKGCMC 1 cut(s) 1165
BaeI ACNNNNGTAYC 2 cut(s) 1021, 1054
BanI GGYRCC 1 cut(s) 2125
BanII GRGCYC 3 cut(s) 528, 1048, 2016
BarI GAAGNNNNNNTAC 2 cut(s) 2184, 2216
BbsI GAAGAC 1 cut(s) 2199
Bbv12I GWGCWC 2 cut(s) 528, 2016
BbvI GCAGC 7 cut(s) 2, 195, 368, 627, 768, 1110, 1856
BccI CCATC 7 cut(s) 300, 319, 487, 1238, 1694, 1788, 1975
BceAI ACGGC 1 cut(s) 221
BciT130I CCWGG 2 cut(s) 812, 890
BciVI GTATCC 1 cut(s) 1049
BclI TGATCA 2 cut(s) 1203, 1716
BcnI CCSGG 1 cut(s) 1069
BcuI ACTAGT 2 cut(s) 130, 1618
BfaI CTAG 7 cut(s) 131, 552, 621, 1577, 1619, 2117, 2181
BfmI CTRYAG 1 cut(s) 783
BfoI RGCGCY 1 cut(s) 36
BfrI CTTAAG 3 cut(s) 148, 737, 1636
BfuI GTATCC 1 cut(s) 1049
BglII AGATCT 1 cut(s) 634
BisI GCNGC 8 cut(s) 16, 209, 357, 641, 757, 854, 1099, 1845
BlsI GCNGC 8 cut(s) 17, 210, 358, 642, 758, 855, 1100, 1846
Bme1390I CCNGG 3 cut(s) 812, 890, 1069
Bme18I GGWCC 2 cut(s) 496, 1984
BmgBI CACGTC 1 cut(s) 2197
BmgT120I GGNCC 3 cut(s) 496, 1088, 1984
BmiI GGNNCC 1 cut(s) 2127
BmrFI CCNGG 3 cut(s) 812, 890, 1069
BmsI GCATC 8 cut(s) 368, 441, 789, 1110, 1341, 1579, 1856, 1929
BpiI GAAGAC 1 cut(s) 2199
BplI GAGNNNNNCTC 2 cut(s) 1499, 1531
BpmI CTGGAG 4 cut(s) 703, 794, 1350, 2067
BpuEI CTTGAG 1 cut(s) 1018
BpuMI CCSGG 1 cut(s) 1069
BsaAI YACGTR 3 cut(s) 602, 1413, 2162
BsaJI CCNNGG 3 cut(s) 198, 460, 1948
BsaWI WCCGGW 1 cut(s) 1134
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 1074, 1244
Bse118I RCCGGY 1 cut(s) 1134
Bse1I ACTGG 2 cut(s) 1807, 2113
Bse3DI GCAATG 3 cut(s) 656, 848, 2220
BseBI CCWGG 2 cut(s) 812, 890
BseDI CCNNGG 3 cut(s) 198, 460, 1948
BseGI GGATG 5 cut(s) 231, 359, 946, 1594, 1847
BseLI CCNNNNNNNGG 3 cut(s) 204, 1074, 1244
BseMI GCAATG 3 cut(s) 656, 848, 2220
BseNI ACTGG 2 cut(s) 1807, 2113
BseRI GAGGAG 4 cut(s) 197, 948, 2069, 2070
BseSI GKGCMC 1 cut(s) 1165
BseXI GCAGC 7 cut(s) 2, 195, 368, 627, 768, 1110, 1856
BsgI GTGCAG 1 cut(s) 1604
Bsh1236I CGCG 1 cut(s) 1535
Bsh1285I CGRYCG 1 cut(s) 1068
BshFI GGCC 2 cut(s) 329, 1089
BshNI GGYRCC 1 cut(s) 2125
BshTI ACCGGT 1 cut(s) 1134
BsiEI CGRYCG 1 cut(s) 1068
BsiHKAI GWGCWC 2 cut(s) 528, 2016
BsiSI CCGG 2 cut(s) 1068, 1135
BslFI GGGAC 3 cut(s) 216, 361, 1849
BslI CCNNNNNNNGG 3 cut(s) 204, 1074, 1244
BsmFI GGGAC 3 cut(s) 216, 361, 1849
BsmI GAATGC 2 cut(s) 106, 1885
BsnI GGCC 2 cut(s) 329, 1089
Bsp1286I GDGCHC 4 cut(s) 528, 1048, 1165, 2016
Bsp143I GATC 9 cut(s) 364, 634, 892, 943, 1203, 1248, 1357, 1716, 1852
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 4 cut(s) 854, 1048, 1450, 1874
BspANI GGCC 2 cut(s) 329, 1089
BspFNI CGCG 1 cut(s) 1535
BspHI TCATGA 1 cut(s) 1009
BspLI GGNNCC 1 cut(s) 2127
BspPI GGATC 3 cut(s) 900, 951, 1256
BspT107I GGYRCC 1 cut(s) 2125
BspTI CTTAAG 3 cut(s) 148, 737, 1636
BsrDI GCAATG 3 cut(s) 656, 848, 2220
BsrFI RCCGGY 1 cut(s) 1134
BsrI ACTGG 2 cut(s) 1807, 2113
BssAI RCCGGY 1 cut(s) 1134
BssECI CCNNGG 3 cut(s) 198, 460, 1948
BssMI GATC 9 cut(s) 364, 634, 892, 943, 1203, 1248, 1357, 1716, 1852
BssT1I CCWWGG 2 cut(s) 198, 460
Bst2UI CCWGG 2 cut(s) 812, 890
Bst4CI ACNGT 3 cut(s) 242, 1160, 1730
Bst6I CTCTTC 3 cut(s) 555, 1649, 2046
BstAFI CTTAAG 3 cut(s) 148, 737, 1636
BstAPI GCANNNNNTGC 3 cut(s) 394, 1882, 2222
BstBAI YACGTR 3 cut(s) 602, 1413, 2162
BstC8I GCNNGC 5 cut(s) 37, 1048, 1304, 1374, 2218
BstDEI CTNAG 5 cut(s) 368, 817, 1112, 1337, 1856
BstDSI CCRYGG 1 cut(s) 198
BstEII GGTNACC 1 cut(s) 1805
BstF5I GGATG 5 cut(s) 231, 359, 946, 1594, 1847
BstFNI CGCG 1 cut(s) 1535
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 3 cut(s) 35, 213, 1535
BstKTI GATC 9 cut(s) 367, 637, 895, 946, 1206, 1251, 1360, 1719, 1855
BstMBI GATC 9 cut(s) 364, 634, 892, 943, 1203, 1248, 1357, 1716, 1852
BstMCI CGRYCG 1 cut(s) 1068
BstMWI GCNNNNNNNGC 4 cut(s) 394, 1095, 1882, 2222
BstNI CCWGG 2 cut(s) 812, 890
BstNSI RCATGY 3 cut(s) 486, 1306, 1347
BstPI GGTNACC 1 cut(s) 1805
BstSCI CCNGG 3 cut(s) 810, 888, 1067
BstSFI CTRYAG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 1165
BstUI CGCG 1 cut(s) 1535
BstV1I GCAGC 7 cut(s) 2, 195, 368, 627, 768, 1110, 1856
BstV2I GAAGAC 1 cut(s) 2199
BstX2I RGATCY 2 cut(s) 634, 892
BstYI RGATCY 2 cut(s) 634, 892
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 2 cut(s) 329, 1089
BtgI CCRYGG 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 812
BtrI CACGTC 1 cut(s) 2197
BtsCI GGATG 5 cut(s) 231, 359, 946, 1594, 1847
BtsIMutI CAGTG 1 cut(s) 1800
Cac8I GCNNGC 5 cut(s) 37, 1048, 1304, 1374, 2218
CaiI CAGNNNCTG 1 cut(s) 385
CciI TCATGA 1 cut(s) 1009
CfoI GCGC 3 cut(s) 35, 213, 1535
Cfr10I RCCGGY 1 cut(s) 1134
Cfr13I GGNCC 3 cut(s) 496, 1088, 1984
Csp6I GTAC 5 cut(s) 136, 372, 956, 1624, 2126
CspAI ACCGGT 1 cut(s) 1134
CviQI GTAC 5 cut(s) 136, 372, 956, 1624, 2126
DdeI CTNAG 5 cut(s) 368, 817, 1112, 1337, 1856
DpnI GATC 9 cut(s) 366, 636, 894, 945, 1205, 1250, 1359, 1718, 1854
DpnII GATC 9 cut(s) 364, 634, 892, 943, 1203, 1248, 1357, 1716, 1852
DraI TTTAAA 2 cut(s) 159, 1647
Eam1104I CTCTTC 3 cut(s) 555, 1649, 2046
EarI CTCTTC 3 cut(s) 555, 1649, 2046
EciI GGCGGA 1 cut(s) 1439
Ecl136II GAGCTC 2 cut(s) 526, 2014
Eco130I CCWWGG 2 cut(s) 198, 460
Eco24I GRGCYC 3 cut(s) 528, 1048, 2016
Eco32I GATATC 1 cut(s) 1386
Eco47I GGWCC 2 cut(s) 496, 1984
Eco53kI GAGCTC 2 cut(s) 526, 2014
Eco57I CTGAAG 1 cut(s) 1242
Eco91I GGTNACC 1 cut(s) 1805
EcoICRI GAGCTC 2 cut(s) 526, 2014
EcoO65I GGTNACC 1 cut(s) 1805
EcoRI GAATTC 1 cut(s) 1080
EcoRII CCWGG 2 cut(s) 810, 888
EcoRV GATATC 1 cut(s) 1386
EcoT14I CCWWGG 2 cut(s) 198, 460
EcoT22I ATGCAT 2 cut(s) 694, 1356
EcoT38I GRGCYC 3 cut(s) 528, 1048, 2016
ErhI CCWWGG 2 cut(s) 198, 460
FaqI GGGAC 3 cut(s) 216, 361, 1849
FauI CCCGC 1 cut(s) 1055
FauNDI CATATG 1 cut(s) 694
FbaI TGATCA 2 cut(s) 1203, 1716
FblI GTMKAC 1 cut(s) 610
Fnu4HI GCNGC 8 cut(s) 16, 209, 357, 641, 757, 854, 1099, 1845
FokI GGATG 5 cut(s) 218, 346, 933, 1601, 1834
FriOI GRGCYC 3 cut(s) 528, 1048, 2016
Fsp4HI GCNGC 8 cut(s) 16, 209, 357, 641, 757, 854, 1099, 1845
FspBI CTAG 7 cut(s) 131, 552, 621, 1577, 1619, 2117, 2181
FspI TGCGCA 1 cut(s) 212
GlaI GCGC 3 cut(s) 34, 212, 1534
GluI GCNGC 8 cut(s) 16, 209, 357, 641, 757, 854, 1099, 1845
GsuI CTGGAG 4 cut(s) 703, 794, 1350, 2067
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 2 cut(s) 329, 1089
HapII CCGG 2 cut(s) 1068, 1135
HhaI GCGC 3 cut(s) 35, 213, 1535
Hin6I GCGC 3 cut(s) 33, 211, 1533
HinP1I GCGC 3 cut(s) 33, 211, 1533
HindIII AAGCTT 3 cut(s) 8, 734, 1015
HpaII CCGG 2 cut(s) 1068, 1135
HphI GGTGA 1 cut(s) 1817
Hpy166II GTNNAC 6 cut(s) 136, 283, 611, 1624, 1771, 2144
Hpy188I TCNGA 7 cut(s) 364, 412, 1043, 1507, 1691, 1852, 1900
Hpy8I GTNNAC 6 cut(s) 136, 283, 611, 1624, 1771, 2144
HpyCH4III ACNGT 3 cut(s) 242, 1160, 1730
HpyCH4IV ACGT 6 cut(s) 601, 879, 1412, 2161, 2173, 2196
HpyF10VI GCNNNNNNNGC 4 cut(s) 394, 1095, 1882, 2222
HpyF3I CTNAG 5 cut(s) 368, 817, 1112, 1337, 1856
HpySE526I ACGT 6 cut(s) 601, 879, 1412, 2161, 2173, 2196
HspAI GCGC 3 cut(s) 33, 211, 1533
KpnI GGTACC 1 cut(s) 2129
Ksp22I TGATCA 2 cut(s) 1203, 1716
Kzo9I GATC 9 cut(s) 364, 634, 892, 943, 1203, 1248, 1357, 1716, 1852
LmnI GCTCC 7 cut(s) 109, 184, 531, 1325, 1520, 1597, 2019
Lsp1109I GCAGC 7 cut(s) 2, 195, 368, 627, 768, 1110, 1856
LweI GCATC 8 cut(s) 368, 441, 789, 1110, 1341, 1579, 1856, 1929
MaeI CTAG 7 cut(s) 131, 552, 621, 1577, 1619, 2117, 2181
MaeII ACGT 6 cut(s) 601, 879, 1412, 2161, 2173, 2196
MaeIII GTNAC 9 cut(s) 236, 308, 485, 503, 1724, 1796, 1805, 1973, 1991
MalI GATC 9 cut(s) 366, 636, 894, 945, 1205, 1250, 1359, 1718, 1854
MboI GATC 9 cut(s) 364, 634, 892, 943, 1203, 1248, 1357, 1716, 1852
MfeI CAATTG 3 cut(s) 108, 1239, 1596
MflI RGATCY 2 cut(s) 634, 892
MhlI GDGCHC 4 cut(s) 528, 1048, 1165, 2016
MlyI GAGTC 4 cut(s) 500, 932, 1988, 2071
Mph1103I ATGCAT 2 cut(s) 694, 1356
MroXI GAANNNNTTC 1 cut(s) 117
MslI CAYNNNNRTG 3 cut(s) 44, 604, 1499
MspCI CTTAAG 3 cut(s) 148, 737, 1636
MspI CCGG 2 cut(s) 1068, 1135
MspR9I CCNGG 3 cut(s) 812, 890, 1069
MunI CAATTG 3 cut(s) 108, 1239, 1596
Mva1269I GAATGC 2 cut(s) 106, 1885
MvaI CCWGG 2 cut(s) 812, 890
MvnI CGCG 1 cut(s) 1535
MwoI GCNNNNNNNGC 4 cut(s) 394, 1095, 1882, 2222
NciI CCSGG 1 cut(s) 1069
NcoI CCATGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 694
NdeII GATC 9 cut(s) 364, 634, 892, 943, 1203, 1248, 1357, 1716, 1852
NlaIV GGNNCC 1 cut(s) 2127
NmuCI GTSAC 6 cut(s) 236, 485, 503, 1805, 1973, 1991
NsbI TGCGCA 1 cut(s) 212
NsiI ATGCAT 2 cut(s) 694, 1356
NspI RCATGY 3 cut(s) 486, 1306, 1347
OliI CACNNNNGTG 1 cut(s) 604
PaeI GCATGC 1 cut(s) 1306
PagI TCATGA 1 cut(s) 1009
PctI GAATGC 2 cut(s) 106, 1885
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 8 cut(s) 69, 194, 407, 664, 1557, 1682, 1895, 2228
PflFI GACNNNGTC 1 cut(s) 1069
PflMI CCANNNNNTGG 1 cut(s) 1244
PinAI ACCGGT 1 cut(s) 1134
PkrI GCNGC 8 cut(s) 17, 210, 358, 642, 758, 855, 1100, 1846
PleI GAGTC 4 cut(s) 500, 931, 1988, 2071
PpsI GAGTC 4 cut(s) 500, 931, 1988, 2071
Ppu21I YACGTR 3 cut(s) 602, 1413, 2162
PshBI ATTAAT 1 cut(s) 1485
Psp124BI GAGCTC 2 cut(s) 528, 2016
Psp6I CCWGG 2 cut(s) 810, 888
PspEI GGTNACC 1 cut(s) 1805
PspGI CCWGG 2 cut(s) 810, 888
PspN4I GGNNCC 1 cut(s) 2127
PspPI GGNCC 3 cut(s) 496, 1088, 1984
PstNI CAGNNNCTG 1 cut(s) 385
PsuI RGATCY 2 cut(s) 634, 892
PsyI GACNNNGTC 1 cut(s) 1069
RsaI GTAC 5 cut(s) 137, 373, 957, 1625, 2127
RsaNI GTAC 5 cut(s) 136, 372, 956, 1624, 2126
RseI CAYNNNNRTG 3 cut(s) 44, 604, 1499
SacI GAGCTC 2 cut(s) 528, 2016
SatI GCNGC 8 cut(s) 16, 209, 357, 641, 757, 854, 1099, 1845
Sau3AI GATC 9 cut(s) 364, 634, 892, 943, 1203, 1248, 1357, 1716, 1852
Sau96I GGNCC 3 cut(s) 496, 1088, 1984
SchI GAGTC 4 cut(s) 500, 932, 1988, 2071
ScrFI CCNGG 3 cut(s) 812, 890, 1069
SduI GDGCHC 4 cut(s) 528, 1048, 1165, 2016
SfaNI GCATC 8 cut(s) 368, 441, 789, 1110, 1341, 1579, 1856, 1929
SfcI CTRYAG 1 cut(s) 783
SinI GGWCC 2 cut(s) 496, 1984
SmiI ATTTAAAT 2 cut(s) 159, 1647
SmiMI CAYNNNNRTG 3 cut(s) 44, 604, 1499
SmlI CTYRAG 4 cut(s) 148, 737, 1033, 1636
SmoI CTYRAG 4 cut(s) 148, 737, 1033, 1636
SpeI ACTAGT 2 cut(s) 130, 1618
SphI GCATGC 1 cut(s) 1306
SsiI CCGC 4 cut(s) 854, 1048, 1450, 1874
SspMI CTAG 7 cut(s) 131, 552, 621, 1577, 1619, 2117, 2181
SstI GAGCTC 2 cut(s) 528, 2016
StyD4I CCNGG 3 cut(s) 810, 888, 1067
StyI CCWWGG 2 cut(s) 198, 460
SwaI ATTTAAAT 2 cut(s) 159, 1647
TaaI ACNGT 3 cut(s) 242, 1160, 1730
TaiI ACGT 6 cut(s) 604, 882, 1415, 2164, 2176, 2199
TaqI TCGA 3 cut(s) 1084, 1382, 1560
TatI WGTACW 3 cut(s) 135, 371, 1623
TauI GCSGC 1 cut(s) 856
TfiI GAWTC 8 cut(s) 69, 194, 407, 664, 1557, 1682, 1895, 2228
TscAI CASTG 1 cut(s) 1807
TseFI GTSAC 6 cut(s) 236, 485, 503, 1805, 1973, 1991
TseI GCWGC 7 cut(s) 15, 208, 356, 640, 756, 1098, 1844
Tsp45I GTSAC 6 cut(s) 236, 485, 503, 1805, 1973, 1991
TspDTI ATGAA 6 cut(s) 141, 573, 718, 1026, 1629, 2064
TspGWI ACGGA 3 cut(s) 224, 916, 1879
TspRI CASTG 1 cut(s) 1807
Tth111I GACNNNGTC 1 cut(s) 1069
Van91I CCANNNNNTGG 1 cut(s) 1244
Vha464I CTTAAG 3 cut(s) 148, 737, 1636
VpaK11BI GGWCC 2 cut(s) 496, 1984
VspI ATTAAT 1 cut(s) 1485
XapI RAATTY 3 cut(s) 160, 1080, 1648
XbaI TCTAGA 3 cut(s) 620, 1576, 2180
XceI RCATGY 3 cut(s) 486, 1306, 1347
XmiI GTMKAC 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 7 cut(s) 131, 552, 621, 1577, 1619, 2117, 2181
Zsp2I ATGCAT 2 cut(s) 694, 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.