MD06G1156900.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000110
Physical Location & Seq
Forward (+)
29917498 .. 29919648
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1156900.v1.1.491

Sequence Viewer

Length: 2100 bp
ATGGAGTCAGCTGCATCACTATTGATTGGGAAAATTGCGTTCATTCTTGAGAACGAAGCATCTTCCATAGCGGCAGTCCGTGATGAAGTTGATGAGCTTAAGCTGGAGCTCATAAGCATGAAATCTTTCTTAATAGATGCTGAAGGCAAGGAACCACAAACAGAAGGAGAGAGAACGTGGGTTACAAGCGTCAGAGATTTGACCTGCGATGCTGAAAATGTCATTGATGAGTTCCTGTATCACATATATGACAAGCAAAGTGCGACTCCATTTGCAAAATTGCTCCACAGAACCATTTACTTTCCAAAGAATCTTTGGTATAGGCATCGAATAGCCAAAAAATTACAGAAAATCACAAAAAAGATCAAAGCCATTCCAGAGAGGAATGAGAGATATGGTGTCTCTACAATAGAAGGAACAAGTTCGGATAGTGTTCCCAGATGGGTGAAGAACAAAGCCGAGTCTTCTCTTTATATTATGGAAGATGAACTAATCGGGATTGAAGACAAGAAGCAAACGTTAATAGGATTGTTGATGAATGGAGAGGAAAATAAAATGGTTGTGTCTGTGGTCGGGATGGGAGGATCAGGCAAGGCAACTCTTGTTGCCAATACCTTCAACAACGAAAACGTGATTGAAGACTTATTCAAACAAATGATCAAGAAGTTCCACGAAGGAAGAAAGGAAGCGGTGCCTGAACATTTGAATTCCATGAGTTATGAAGAATTGTTAGAGATGTTGTCGACATACTTGAAGTCTAAAAGGTACCTCGTTGTATTGGATGATGTGTGGGATATTAAACTTTGGCAAGAAATAAGGATACCACTTCTTAATAGACACCATGGAAGTCGAATCATGCTTACAACACGAAAGAAAGACATAGCATTATATTCTTTTGAAGTTGAAAGTCGTCCTTTTGAAATTGAACCTTTGGAAAACAATGAAGCTTGGGAGCTCTTTAGCAAGAAAGCATTCTCAAGTTATGATAACAAATCTTGTCCACCAGAGCTTGAATCATTAGCATGGAAACTTGTGGAAAAGTGTGAAGGCCTACCTCTGGCAGTGGTAACTTTAGGTGGTCTAATGTCTTCGAAGAGGTCATCATCGGAATGGAGAAGCGTATATAACAGCTTAAATTGGCACTTGACTAACAATCCTATGTTAGAACCAATGAGCAGCATCTTGTTGCTTAGTTTCAACAATTTGCCCAACCGGTTGAAGCCCTGTTTCCTATATTGTGCCTTTTTCCCAGAAGATTGTCTCATCAAAAGAAAAAGGCTGATCAGGTTGTGGATAGCTGAAGGGTTTGTTGAACCAATTGATGGGGTCACACCAGAAGAAGTTGCAGAGGGCTATCTTTTGGAACTTATTGTTCGTAGCATGCTACAAGTTGAAAAGAAAGATGCTGGACGACTAATAGCATGTAAGATGCATGATCTTGTGCGTGAGCTTGCTTTGTCGACATCAAAAAAGGAAAAGTTTGGTGCTACGTATGTTGGCAGAGAAATAGAAAGAGAAATTAATTCTTGCACAGGTATGTCAGAGCTTAGCTCCTTTCTTGTCTTTGGCGCGTTAAAGAAATTGCCTTCTGGATTCAAGTTGTTGAGAGTTCTAGATGTGCAGGATGCTCCAATTGATAGATTTCCAGATGAACTAGTGTACTTGTCCAACTTAAGATATTTAAATTTGAAGAGAACTTTAATTGACGAGCTTCCAGAATCCATCGGACGGCTTCGCAACCTTCAAACCTTGAACATCTGTCACAGTAAGATAAAGGCACTTCCAAAAGCGATCTCCAAGTTAGTAAACCTACGCCATCTAATCATGTATTGTTACACTGGTGATTGGGCGGCCTTTAGATCTCTCAATGGGACAAAAACAGCATCTGATCTAAGTAAATTACAGAAACTGCACGTTTTGTCAGCAGTTGAATCAGAAGGAAAGATTATTAAAGGCATCAGGAATATGACCCAACTTACAAGCGTCGGTATTACAAATGTGAAAGCAAGTGACGAGATGGACCTCTGTGACTCCCTTCAAAAGTTAGAGCTCCTTCACGATTTGTCTTTAATGGCAAGTGATGAAGAGGAGTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

700

Amino Acids

79.77

Weight (kDa)

6.31

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 87 1.6e-19 Rx N-terminal domain
NB-ARC PF00931 168 - 327 1.8e-31 NB-ARC domain
WHD_DRP PF23559 416 - 485 5e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 518 - 694 1e-25 Leucine-rich repeat region
LRR_8 PF13855 556 - 608 2.2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
Acc65I GGTACC 1 cut(s) 765
AccB1I GGYRCC 2 cut(s) 691, 765
AccB7I CCANNNNNTGG 1 cut(s) 1322
AccI GTMKAC 2 cut(s) 743, 1460
AccII CGCG 1 cut(s) 1571
AciI CCGC 3 cut(s) 71, 689, 1850
AclI AACGTT 1 cut(s) 518
AclWI GGATC 1 cut(s) 592
AcsI RAATTY 2 cut(s) 706, 1684
AcuI CTGAAG 2 cut(s) 162, 1320
AfaI GTAC 2 cut(s) 767, 1661
AfiI CCNNNNNNNGG 3 cut(s) 1057, 1322, 1728
AflII CTTAAG 2 cut(s) 98, 1672
AgeI ACCGGT 1 cut(s) 1212
AhlI ACTAGT 1 cut(s) 1654
Alw21I GWGCWC 3 cut(s) 111, 957, 2052
Alw26I GTCTC 2 cut(s) 406, 1265
AlwI GGATC 1 cut(s) 592
AlwNI CAGNNNCTG 2 cut(s) 1886, 1909
AoxI GGCC 2 cut(s) 1048, 1851
ApeKI GCWGC 2 cut(s) 11, 1176
ApoI RAATTY 2 cut(s) 706, 1684
AseI ATTAAT 1 cut(s) 1521
AsiGI ACCGGT 1 cut(s) 1212
Asp700I GAANNNNTTC 3 cut(s) 125, 421, 971
Asp718I GGTACC 1 cut(s) 765
AspLEI GCGC 1 cut(s) 1571
AspS9I GGNCC 1 cut(s) 2020
AsuHPI GGTGA 2 cut(s) 457, 1853
AsuII TTCGAA 1 cut(s) 1091
AvaII GGWCC 1 cut(s) 2020
BanI GGYRCC 2 cut(s) 691, 765
BanII GRGCYC 3 cut(s) 111, 957, 2052
BbsI GAAGAC 4 cut(s) 456, 510, 645, 1080
Bbv12I GWGCWC 3 cut(s) 111, 957, 2052
BbvI GCAGC 1 cut(s) 1188
BccI CCATC 6 cut(s) 435, 571, 1316, 1730, 1824, 2011
BceAI ACGGC 1 cut(s) 1745
BciVI GTATCC 1 cut(s) 813
BclI TGATCA 2 cut(s) 657, 1281
BcoDI GTCTC 2 cut(s) 406, 1265
BcuI ACTAGT 1 cut(s) 1654
BfaI CTAG 2 cut(s) 1613, 1655
BfrI CTTAAG 2 cut(s) 98, 1672
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 1 cut(s) 813
BglII AGATCT 1 cut(s) 1859
BisI GCNGC 4 cut(s) 12, 72, 1177, 1851
BlpI GCTNAGC 1 cut(s) 1547
BlsI GCNGC 4 cut(s) 13, 73, 1178, 1852
Bme18I GGWCC 1 cut(s) 2020
BmgT120I GGNCC 1 cut(s) 2020
BmiI GGNNCC 3 cut(s) 153, 693, 767
BpiI GAAGAC 4 cut(s) 456, 510, 645, 1080
BplI GAGNNNNNCTC 2 cut(s) 1535, 1567
BpmI CTGGAG 1 cut(s) 125
Bpu1102I GCTNAGC 1 cut(s) 1547
Bpu14I TTCGAA 1 cut(s) 1091
BpuEI CTTGAG 2 cut(s) 68, 961
BsaAI YACGTR 1 cut(s) 1491
BsaJI CCNNGG 1 cut(s) 841
BsaWI WCCGGW 1 cut(s) 1212
Bsc4I CCNNNNNNNGG 3 cut(s) 1057, 1322, 1728
Bse118I RCCGGY 1 cut(s) 1212
Bse1I ACTGG 1 cut(s) 1843
BseDI CCNNGG 1 cut(s) 841
BseGI GGATG 3 cut(s) 582, 787, 1630
BseLI CCNNNNNNNGG 3 cut(s) 1057, 1322, 1728
BseNI ACTGG 1 cut(s) 1843
BseXI GCAGC 1 cut(s) 1188
BsgI GTGCAG 2 cut(s) 1640, 1895
Bsh1236I CGCG 1 cut(s) 1571
BshFI GGCC 2 cut(s) 1050, 1853
BshNI GGYRCC 2 cut(s) 691, 765
BshTI ACCGGT 1 cut(s) 1212
BsiHKAI GWGCWC 3 cut(s) 111, 957, 2052
BsiSI CCGG 1 cut(s) 1213
BslFI GGGAC 1 cut(s) 1885
BslI CCNNNNNNNGG 3 cut(s) 1057, 1322, 1728
BsmAI GTCTC 2 cut(s) 406, 1265
BsmFI GGGAC 1 cut(s) 1885
BsmI GAATGC 1 cut(s) 971
BsnI GGCC 2 cut(s) 1050, 1853
Bsp119I TTCGAA 1 cut(s) 1091
Bsp1286I GDGCHC 3 cut(s) 111, 957, 2052
Bsp143I GATC 8 cut(s) 363, 584, 657, 1281, 1435, 1791, 1859, 1888
Bsp1720I GCTNAGC 1 cut(s) 1547
Bsp19I CCATGG 1 cut(s) 841
BspACI CCGC 3 cut(s) 71, 689, 1850
BspANI GGCC 2 cut(s) 1050, 1853
BspFNI CGCG 1 cut(s) 1571
BspLI GGNNCC 3 cut(s) 153, 693, 767
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 1 cut(s) 592
BspT104I TTCGAA 1 cut(s) 1091
BspT107I GGYRCC 2 cut(s) 691, 765
BspTI CTTAAG 2 cut(s) 98, 1672
BsrFI RCCGGY 1 cut(s) 1212
BsrI ACTGG 1 cut(s) 1843
BssAI RCCGGY 1 cut(s) 1212
BssECI CCNNGG 1 cut(s) 841
BssMI GATC 8 cut(s) 363, 584, 657, 1281, 1435, 1791, 1859, 1888
BssT1I CCWWGG 1 cut(s) 841
Bst4CI ACNGT 1 cut(s) 1766
Bst6I CTCTTC 3 cut(s) 1088, 1685, 2079
BstAFI CTTAAG 2 cut(s) 98, 1672
BstBAI YACGTR 1 cut(s) 1491
BstBI TTCGAA 1 cut(s) 1091
BstC8I GCNNGC 2 cut(s) 1382, 1452
BstDEI CTNAG 3 cut(s) 1190, 1547, 1892
BstDSI CCRYGG 1 cut(s) 841
BstF5I GGATG 3 cut(s) 582, 787, 1630
BstFNI CGCG 1 cut(s) 1571
BstHHI GCGC 1 cut(s) 1571
BstKTI GATC 8 cut(s) 366, 587, 660, 1284, 1438, 1794, 1862, 1891
BstMAI GTCTC 2 cut(s) 406, 1265
BstMBI GATC 8 cut(s) 363, 584, 657, 1281, 1435, 1791, 1859, 1888
BstNSI RCATGY 2 cut(s) 1384, 1425
BstSNI TACGTA 1 cut(s) 1491
BstUI CGCG 1 cut(s) 1571
BstV1I GCAGC 1 cut(s) 1188
BstV2I GAAGAC 4 cut(s) 456, 510, 645, 1080
BstX2I RGATCY 1 cut(s) 1859
BstYI RGATCY 1 cut(s) 1859
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 2 cut(s) 1050, 1853
BtgI CCRYGG 1 cut(s) 841
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 3 cut(s) 582, 787, 1630
BtsI GCAGTG 1 cut(s) 1068
BtsIMutI CAGTG 2 cut(s) 1068, 1836
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 1382, 1452
CaiI CAGNNNCTG 2 cut(s) 1886, 1909
CfoI GCGC 1 cut(s) 1571
Cfr10I RCCGGY 1 cut(s) 1212
Cfr13I GGNCC 1 cut(s) 2020
CseI GACGC 2 cut(s) 178, 1972
Csp6I GTAC 2 cut(s) 766, 1660
CspAI ACCGGT 1 cut(s) 1212
CviAII CATG 9 cut(s) 118, 712, 842, 856, 1023, 1381, 1422, 1433, 1825
CviQI GTAC 2 cut(s) 766, 1660
DdeI CTNAG 3 cut(s) 1190, 1547, 1892
DpnI GATC 8 cut(s) 365, 586, 659, 1283, 1437, 1793, 1861, 1890
DpnII GATC 8 cut(s) 363, 584, 657, 1281, 1435, 1791, 1859, 1888
DraI TTTAAA 1 cut(s) 1683
Eam1104I CTCTTC 3 cut(s) 1088, 1685, 2079
EarI CTCTTC 3 cut(s) 1088, 1685, 2079
Ecl136II GAGCTC 3 cut(s) 109, 955, 2050
Eco105I TACGTA 1 cut(s) 1491
Eco130I CCWWGG 1 cut(s) 841
Eco147I AGGCCT 1 cut(s) 1050
Eco24I GRGCYC 3 cut(s) 111, 957, 2052
Eco47I GGWCC 1 cut(s) 2020
Eco53kI GAGCTC 3 cut(s) 109, 955, 2050
Eco57I CTGAAG 2 cut(s) 162, 1320
EcoICRI GAGCTC 3 cut(s) 109, 955, 2050
EcoRI GAATTC 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 841
EcoT22I ATGCAT 1 cut(s) 1434
EcoT38I GRGCYC 3 cut(s) 111, 957, 2052
ErhI CCWWGG 1 cut(s) 841
FaeI CATG 9 cut(s) 121, 715, 845, 859, 1026, 1384, 1425, 1436, 1828
FalI AAGNNNNNCTT 2 cut(s) 898, 930
FaqI GGGAC 1 cut(s) 1885
FatI CATG 9 cut(s) 117, 711, 841, 855, 1022, 1380, 1421, 1432, 1824
FbaI TGATCA 2 cut(s) 657, 1281
FblI GTMKAC 2 cut(s) 743, 1460
Fnu4HI GCNGC 4 cut(s) 12, 72, 1177, 1851
FokI GGATG 3 cut(s) 589, 794, 1637
FriOI GRGCYC 3 cut(s) 111, 957, 2052
Fsp4HI GCNGC 4 cut(s) 12, 72, 1177, 1851
FspBI CTAG 2 cut(s) 1613, 1655
GlaI GCGC 1 cut(s) 1570
GluI GCNGC 4 cut(s) 12, 72, 1177, 1851
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 1050, 1853
HapII CCGG 1 cut(s) 1213
HgaI GACGC 2 cut(s) 178, 1972
HhaI GCGC 1 cut(s) 1571
Hin1II CATG 9 cut(s) 121, 715, 845, 859, 1026, 1384, 1425, 1436, 1828
Hin6I GCGC 1 cut(s) 1569
HinP1I GCGC 1 cut(s) 1569
HincII GTYRAC 2 cut(s) 744, 1461
HindII GTYRAC 2 cut(s) 744, 1461
HindIII AAGCTT 1 cut(s) 945
HpaII CCGG 1 cut(s) 1213
HphI GGTGA 2 cut(s) 457, 1853
Hpy166II GTNNAC 5 cut(s) 744, 1001, 1461, 1660, 1807
Hpy188I TCNGA 7 cut(s) 194, 427, 1108, 1543, 1727, 1888, 1936
Hpy8I GTNNAC 5 cut(s) 744, 1001, 1461, 1660, 1807
Hpy99I CGWCG 1 cut(s) 1988
HpyCH4III ACNGT 1 cut(s) 1766
HpyCH4IV ACGT 5 cut(s) 176, 518, 630, 1490, 1914
HpyCH4V TGCA 7 cut(s) 14, 275, 1346, 1432, 1530, 1621, 1912
HpyF3I CTNAG 3 cut(s) 1190, 1547, 1892
HpySE526I ACGT 5 cut(s) 176, 518, 630, 1490, 1914
Hsp92II CATG 9 cut(s) 121, 715, 845, 859, 1026, 1384, 1425, 1436, 1828
HspAI GCGC 1 cut(s) 1569
KpnI GGTACC 1 cut(s) 769
Ksp22I TGATCA 2 cut(s) 657, 1281
Kzo9I GATC 8 cut(s) 363, 584, 657, 1281, 1435, 1791, 1859, 1888
LmnI GCTCC 6 cut(s) 106, 288, 952, 1556, 1633, 2055
Lsp1109I GCAGC 1 cut(s) 1188
MaeI CTAG 2 cut(s) 1613, 1655
MaeII ACGT 5 cut(s) 176, 518, 630, 1490, 1914
MaeIII GTNAC 7 cut(s) 181, 1066, 1327, 1760, 1832, 2009, 2027
MalI GATC 8 cut(s) 365, 586, 659, 1283, 1437, 1793, 1861, 1890
MboI GATC 8 cut(s) 363, 584, 657, 1281, 1435, 1791, 1859, 1888
MfeI CAATTG 2 cut(s) 1317, 1632
MflI RGATCY 1 cut(s) 1859
MhlI GDGCHC 3 cut(s) 111, 957, 2052
MlyI GAGTC 4 cut(s) 14, 259, 470, 2024
MmeI TCCRAC 1 cut(s) 1692
MnlI CCTC 9 cut(s) 375, 538, 575, 779, 1065, 1089, 1342, 2033, 2080
Mph1103I ATGCAT 1 cut(s) 1434
MroXI GAANNNNTTC 3 cut(s) 125, 421, 971
MslI CAYNNNNRTG 5 cut(s) 116, 246, 1021, 1108, 1535
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 2 cut(s) 98, 1672
MspI CCGG 1 cut(s) 1213
MunI CAATTG 2 cut(s) 1317, 1632
Mva1269I GAATGC 1 cut(s) 971
MvnI CGCG 1 cut(s) 1571
NcoI CCATGG 1 cut(s) 841
NdeII GATC 8 cut(s) 363, 584, 657, 1281, 1435, 1791, 1859, 1888
NlaIII CATG 9 cut(s) 121, 715, 845, 859, 1026, 1384, 1425, 1436, 1828
NlaIV GGNNCC 3 cut(s) 153, 693, 767
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 4 cut(s) 1327, 1760, 2009, 2027
NsiI ATGCAT 1 cut(s) 1434
NspI RCATGY 2 cut(s) 1384, 1425
NspV TTCGAA 1 cut(s) 1091
PaeI GCATGC 1 cut(s) 1384
PceI AGGCCT 1 cut(s) 1050
PctI GAATGC 1 cut(s) 971
PdmI GAANNNNTTC 3 cut(s) 125, 421, 971
PfeI GAWTC 6 cut(s) 310, 852, 1013, 1593, 1718, 1931
PflMI CCANNNNNTGG 1 cut(s) 1322
PinAI ACCGGT 1 cut(s) 1212
PkrI GCNGC 4 cut(s) 13, 73, 1178, 1852
PleI GAGTC 4 cut(s) 13, 259, 469, 2024
PpsI GAGTC 4 cut(s) 13, 259, 469, 2024
Ppu21I YACGTR 1 cut(s) 1491
PshBI ATTAAT 1 cut(s) 1521
Psp124BI GAGCTC 3 cut(s) 111, 957, 2052
Psp1406I AACGTT 1 cut(s) 518
PspN4I GGNNCC 3 cut(s) 153, 693, 767
PspPI GGNCC 1 cut(s) 2020
PsrI GAACNNNNNNTAC 2 cut(s) 166, 198
PstNI CAGNNNCTG 2 cut(s) 1886, 1909
PsuI RGATCY 1 cut(s) 1859
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 2 cut(s) 767, 1661
RsaNI GTAC 2 cut(s) 766, 1660
RseI CAYNNNNRTG 5 cut(s) 116, 246, 1021, 1108, 1535
SacI GAGCTC 3 cut(s) 111, 957, 2052
SalI GTCGAC 2 cut(s) 742, 1459
SatI GCNGC 4 cut(s) 12, 72, 1177, 1851
Sau3AI GATC 8 cut(s) 363, 584, 657, 1281, 1435, 1791, 1859, 1888
Sau96I GGNCC 1 cut(s) 2020
SchI GAGTC 4 cut(s) 14, 259, 470, 2024
SduI GDGCHC 3 cut(s) 111, 957, 2052
SfuI TTCGAA 1 cut(s) 1091
SinI GGWCC 1 cut(s) 2020
SmiI ATTTAAAT 1 cut(s) 1683
SmiMI CAYNNNNRTG 5 cut(s) 116, 246, 1021, 1108, 1535
SmlI CTYRAG 4 cut(s) 47, 98, 976, 1672
SmoI CTYRAG 4 cut(s) 47, 98, 976, 1672
SnaBI TACGTA 1 cut(s) 1491
SpeI ACTAGT 1 cut(s) 1654
SphI GCATGC 1 cut(s) 1384
SseBI AGGCCT 1 cut(s) 1050
SsiI CCGC 3 cut(s) 71, 689, 1850
SspMI CTAG 2 cut(s) 1613, 1655
SstI GAGCTC 3 cut(s) 111, 957, 2052
StuI AGGCCT 1 cut(s) 1050
StyI CCWWGG 1 cut(s) 841
SwaI ATTTAAAT 1 cut(s) 1683
TaaI ACNGT 1 cut(s) 1766
TaiI ACGT 5 cut(s) 179, 521, 633, 1493, 1917
TaqI TCGA 5 cut(s) 328, 743, 850, 1091, 1460
TatI WGTACW 1 cut(s) 1659
TauI GCSGC 2 cut(s) 74, 1853
TfiI GAWTC 6 cut(s) 310, 852, 1013, 1593, 1718, 1931
TscAI CASTG 2 cut(s) 1068, 1843
TseFI GTSAC 4 cut(s) 1327, 1760, 2009, 2027
TseI GCWGC 2 cut(s) 11, 1176
Tsp45I GTSAC 4 cut(s) 1327, 1760, 2009, 2027
TspDTI ATGAA 9 cut(s) 31, 99, 134, 501, 551, 735, 957, 1665, 2097
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 2 cut(s) 1068, 1843
Van91I CCANNNNNTGG 1 cut(s) 1322
Vha464I CTTAAG 2 cut(s) 98, 1672
VpaK11BI GGWCC 1 cut(s) 2020
VspI ATTAAT 1 cut(s) 1521
XapI RAATTY 2 cut(s) 706, 1684
XbaI TCTAGA 1 cut(s) 1612
XceI RCATGY 2 cut(s) 1384, 1425
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
XmiI GTMKAC 2 cut(s) 743, 1460
XmnI GAANNNNTTC 3 cut(s) 125, 421, 971
XspI CTAG 2 cut(s) 1613, 1655
Zsp2I ATGCAT 1 cut(s) 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.