Rroxscaffold_2G00109320

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000110
Physical Location & Seq
Forward (+)
33495176 .. 33496059
884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109320.1

Sequence Viewer

Length: 231 bp
ATGTCAAATCTCCATGACTTGCATGTTGAGTGCTGCATGTCATTAAAGACCTTGCCACCGGGTCTTGAATACCTTGCTAATCTTCAAAAGTTGACGTTAGAGACGGTTCCAAAAAAAATTATATTGCCCATTCGAAAAGGAGCTGTGGATCGTCGAAAAGTTCAACACATCCCCGAAATCCTCCATTTTTATGAAGAGTCATCTATGAGGTTCTATGAAATATTGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

76

Amino Acids

8.88

Weight (kDa)

7.83

Isoelectric Point (pI)

77.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 156
AgsI TTSAA 3 cut(s) 68, 86, 164
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 33
AsuC2I CCSGG 1 cut(s) 60
AsuII TTCGAA 1 cut(s) 133
BbvI GCAGC 1 cut(s) 20
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 229
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
Bsp119I TTCGAA 1 cut(s) 133
Bsp143I GATC 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 156
BspT104I TTCGAA 1 cut(s) 133
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 133
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 148
BstNSI RCATGY 2 cut(s) 26, 40
BstSCI CCNGG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 168
CviAII CATG 3 cut(s) 14, 23, 37
CviJI RGCY 1 cut(s) 143
CviKI_1 RGCY 1 cut(s) 143
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 3 cut(s) 17, 26, 40
FaiI YATR 7 cut(s) 15, 24, 38, 122, 192, 206, 216
FatI CATG 3 cut(s) 13, 22, 36
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 229
GluI GCNGC 1 cut(s) 34
HapII CCGG 1 cut(s) 59
Hin1II CATG 3 cut(s) 17, 26, 40
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 22, 36
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 3 cut(s) 17, 26, 40
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 1 cut(s) 72
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 229
MaeII ACGT 1 cut(s) 95
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 74, 206
MluCI AATT 1 cut(s) 117
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 2 cut(s) 191, 201
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 60
NciI CCSGG 1 cut(s) 60
NdeII GATC 1 cut(s) 148
NlaIII CATG 3 cut(s) 17, 26, 40
NlaIV GGNNCC 1 cut(s) 108
NspI RCATGY 2 cut(s) 26, 40
NspV TTCGAA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 35
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 148
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 60
SetI ASST 5 cut(s) 53, 75, 98, 145, 212
SfuI TTCGAA 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 1 cut(s) 117
SspI AATATT 1 cut(s) 222
SspMI CTAG 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 98
TaqI TCGA 2 cut(s) 133, 154
TasI AATT 1 cut(s) 117
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 207, 231
XceI RCATGY 2 cut(s) 26, 40
XspI CTAG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.