Rorug05G0043800

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000110
Physical Location & Seq
Reverse (-)
3865816 .. 3870445
4630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0043800.1

Sequence Viewer

Length: 1746 bp
ATGAAAGATTTCGGAATCGTCCAGAAGATTTCTAGACCTTTCCGTGCCAACCCTAGGCTCTCCAATATTCTCCTCGTCGTCGCCGTCAGTGGCGGCGGCTATGTGGCTTATGCTCAGGCGAACTCTGACTCTGACCTGATCAGTAGTAGTGCACCTGATGTGGAAAGAAAGAAGGTGGTTGTACTTGGAACTGGGTGGGCAGGAACATCTTTCTTAAGGAGTCTGAAAAATTCTTCATATGATGTTCATGTTGTATCTCCTAGGAATTACTTTGCGTTCACCCCTTTACTACCAAGTGTTACCTGTGGTACCGTGGAGCCTCGGAGCATTGTTGAACCAATTCGTAACATTGTCAGAAAGAAAAAGATTGGCTTTCAATTCACTGAAGCTGAGTGTCTCAAGATTGATGCAAAAGAGAAGAAAGTCTATTGCCGATCTAATCTAGAGAATGGGGAAAAAGAATTTGTTGTGGACTATGACTACCTTGTAATATCTGTGGGAGCAAATGTTAATACATTCAATACTCCTGGTGTGATGGAGAACTGCCATTTCTTGAAGGAAGTAGAAGATGCCCAGAAGATACGAAAAACTGTTATTGAATGCTTTGAAAAGGCTAGCCTGCCAACTGTAAGTGATGAGGAGAAGGAGAGAATTCTTCATTTTGCCGTTGTTGGAGGTGGCCCAACTGGTGTGGAGTTTGCTGCAGAACTTCATGACTATGTGAATGAAGACTTGGTCAAATTATATCCTGGGGTAAAAGATAAAGTTAAAATAACACTTCTCGAGGCCGGAAATCACATTCTGAGTATGTTTGATAAAAGAATCACGGAGTTTGCTGAAGAAAAATTTCGCAGAGAGGGTATTAATGTAAAAACTGGAGCAATGGTTACCAAAGTAGATGATAAACAAATCACTACCAAAGAAATGAAAACTGGGGAAATTTCCACCATGCCATATGGAATGGCTCTCTGGTCAACTGGTATTGGAACGCGGCCTTTCATAAGGGATTTCATGAATCAAATTGGTCAGGCTAATAGACGTGTTCTAGCAACTGATGAATGGTTACGAGTGGAGGGATGTGACAAAGTCTATGCACTTGGTGATTGTGCCACAATCAATCAGCGAAAAGTCCTGGAAGATATCTCTGCCATATTCAGTAAGGCAGACAAGGACAAATCAGGAACACTTACAGTTCAGGAATGGAAAGAAGTCATCAATGACATTTGTGAAAGATATCCTCAAGTGGAGCTTTATTTGAAGAACATGCAGATGCGCGATATTGTTGATCTTTTGAAGGAAACAAAGGGCGCTAGTGCAACCAAATCAGCGGAGCTGAACATTGAAGATTTCAAAATAGCTCTTTCTAAAGTGGATTCCCAGATGAAAATGCTTCCAGCTACAGCCCAGGTTGCAGCTCAAGAAGGTGCCTACCTTGCCAGTTGTTTCAACCGTATGGAAAAGTGTGAGAAATATCCAGAAGGTCCTCTCAGGTTTCGAGGAGAAGGTCGCCATCGGTTCCATCCCTTCAGGTACAAGCATCTTGGTCAATTTGCTCCTTTGGGAGGTGAGCAAACTGCTGCACAACTCCCTGTTCTTCCCGGTGATGGGGTGTCAATTGGCTACAGTTCCCAGTGGCTTTGGTATTCTGTTTATGCAAGCAAACAAGTTAGCTGGCGCAACAGGGGAATGGTCATTTCAGACTGGGTAAGGCGTTTCATTTTCGGAAGGGATTCTAGTCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

581

Amino Acids

65.35

Weight (kDa)

8.57

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 57 - 374 4.7e-55 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 220 - 303 1.4e-10 Pyridine nucleotide-disulphide oxidoreductase
NDH2_C PF22366 513 - 577 8.6e-15 NDH2 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 308
AccB1I GGYRCC 2 cut(s) 308, 1424
AccII CGCG 2 cut(s) 991, 1275
AciI CCGC 4 cut(s) 93, 96, 991, 1328
AcsI RAATTY 5 cut(s) 229, 461, 651, 845, 939
AcuI CTGAAG 3 cut(s) 405, 858, 1510
AdeI CACNNNGTG 1 cut(s) 1100
AfaI GTAC 3 cut(s) 183, 310, 1532
AfiI CCNNNNNNNGG 4 cut(s) 54, 1562, 1604, 1605
AflII CTTAAG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 1039
AjiI CACGTC 1 cut(s) 1040
AjnI CCWGG 4 cut(s) 526, 748, 1131, 1404
AjuI GAANNNNNNNTTGG 2 cut(s) 716, 748
AluBI AGCT 7 cut(s) 389, 1249, 1333, 1358, 1397, 1415, 1671
AluI AGCT 7 cut(s) 389, 1249, 1333, 1358, 1397, 1415, 1671
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 401
Alw44I GTGCAC 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 3 cut(s) 679, 786, 992
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 3 cut(s) 701, 1412, 1577
ApoI RAATTY 5 cut(s) 229, 461, 651, 845, 939
AseI ATTAAT 1 cut(s) 864
Asp700I GAANNNNTTC 4 cut(s) 8, 339, 846, 1729
Asp718I GGTACC 1 cut(s) 308
AspA2I CCTAGG 2 cut(s) 53, 260
AspLEI GCGC 3 cut(s) 1275, 1310, 1677
AspS9I GGNCC 2 cut(s) 680, 1481
AsuC2I CCSGG 1 cut(s) 1599
AsuHPI GGTGA 4 cut(s) 271, 1112, 1577, 1613
AsuNHI GCTAGC 1 cut(s) 614
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 1 cut(s) 1481
AvrII CCTAGG 2 cut(s) 53, 260
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 2 cut(s) 308, 1424
BbsI GAAGAC 1 cut(s) 735
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 688, 1424, 1564
BccI CCATC 4 cut(s) 529, 1518, 1527, 1598
BceAI ACGGC 2 cut(s) 68, 650
BciT130I CCWGG 4 cut(s) 528, 750, 1133, 1406
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 1599
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 8 cut(s) 33, 54, 261, 443, 615, 1046, 1311, 1734
BfmI CTRYAG 3 cut(s) 702, 1398, 1621
BfoI RGCGCY 1 cut(s) 1311
BfrI CTTAAG 1 cut(s) 214
BisI GCNGC 6 cut(s) 94, 97, 702, 992, 1413, 1578
BlnI CCTAGG 2 cut(s) 53, 260
BlsI GCNGC 6 cut(s) 95, 98, 703, 993, 1414, 1579
Bme1390I CCNGG 5 cut(s) 528, 750, 1133, 1406, 1599
Bme18I GGWCC 1 cut(s) 1481
BmeT110I CYCGRG 1 cut(s) 782
BmgBI CACGTC 1 cut(s) 1040
BmgT120I GGNCC 2 cut(s) 680, 1481
BmiI GGNNCC 4 cut(s) 310, 318, 1426, 1517
BmrFI CCNGG 5 cut(s) 528, 750, 1133, 1406, 1599
BmrI ACTGGG 4 cut(s) 201, 942, 1624, 1711
BmsI GCATC 4 cut(s) 397, 559, 1260, 1546
BmtI GCTAGC 1 cut(s) 618
BmuI ACTGGG 4 cut(s) 201, 942, 1624, 1711
BpiI GAAGAC 1 cut(s) 735
BpmI CTGGAG 1 cut(s) 897
Bpu10I CCTNAGC 1 cut(s) 114
BpuEI CTTGAG 3 cut(s) 383, 1224, 1401
BpuMI CCSGG 1 cut(s) 1599
BsaJI CCNNGG 6 cut(s) 53, 260, 312, 320, 749, 1404
BsaXI ACNNNNNCTCC 4 cut(s) 492, 522, 870, 900
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 1562, 1604, 1605
Bse1I ACTGG 8 cut(s) 196, 691, 880, 937, 982, 1437, 1630, 1706
Bse3DI GCAATG 1 cut(s) 888
BseBI CCWGG 4 cut(s) 528, 750, 1133, 1406
BseDI CCNNGG 6 cut(s) 53, 260, 312, 320, 749, 1404
BseGI GGATG 2 cut(s) 1082, 1519
BseLI CCNNNNNNNGG 4 cut(s) 54, 1562, 1604, 1605
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 4 cut(s) 128, 381, 794, 1501
BseNI ACTGG 8 cut(s) 196, 691, 880, 937, 982, 1437, 1630, 1706
BseRI GAGGAG 3 cut(s) 62, 653, 1512
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 3 cut(s) 688, 1424, 1564
BsgI GTGCAG 1 cut(s) 1563
Bsh1236I CGCG 2 cut(s) 991, 1275
BshFI GGCC 3 cut(s) 681, 788, 994
BshNI GGYRCC 2 cut(s) 308, 1424
BsiHKAI GWGCWC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 2 cut(s) 789, 1599
BslI CCNNNNNNNGG 4 cut(s) 54, 1562, 1604, 1605
BsmAI GTCTC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 3 cut(s) 681, 788, 994
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 3 cut(s) 138, 434, 1285
BspACI CCGC 4 cut(s) 93, 96, 991, 1328
BspANI GGCC 3 cut(s) 681, 788, 994
BspCNI CTCAG 4 cut(s) 127, 382, 795, 1500
BspFNI CGCG 2 cut(s) 991, 1275
BspHI TCATGA 2 cut(s) 712, 1011
BspLI GGNNCC 4 cut(s) 310, 318, 1426, 1517
BspMAI CTGCAG 1 cut(s) 706
BspOI GCTAGC 1 cut(s) 618
BspT107I GGYRCC 2 cut(s) 308, 1424
BspTI CTTAAG 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 888
BsrI ACTGG 8 cut(s) 196, 691, 880, 937, 982, 1437, 1630, 1706
BssECI CCNNGG 6 cut(s) 53, 260, 312, 320, 749, 1404
BssMI GATC 3 cut(s) 138, 434, 1285
BssT1I CCWWGG 2 cut(s) 53, 260
Bst2UI CCWGG 4 cut(s) 528, 750, 1133, 1406
Bst4CI ACNGT 6 cut(s) 313, 592, 628, 1192, 1451, 1625
BstAFI CTTAAG 1 cut(s) 214
BstC8I GCNNGC 4 cut(s) 616, 620, 1657, 1673
BstDEI CTNAG 4 cut(s) 114, 390, 803, 1487
BstDSI CCRYGG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 886
BstENI CCTNNNNNAGG 1 cut(s) 1560
BstF5I GGATG 2 cut(s) 1082, 1519
BstFNI CGCG 2 cut(s) 991, 1275
BstH2I RGCGCY 1 cut(s) 1311
BstHHI GCGC 3 cut(s) 1275, 1310, 1677
BstKTI GATC 3 cut(s) 141, 437, 1288
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 3 cut(s) 138, 434, 1285
BstMWI GCNNNNNNNGC 2 cut(s) 1409, 1433
BstNI CCWGG 4 cut(s) 528, 750, 1133, 1406
BstNSI RCATGY 1 cut(s) 1267
BstPI GGTNACC 1 cut(s) 886
BstSCI CCNGG 5 cut(s) 526, 748, 1131, 1404, 1597
BstSFI CTRYAG 3 cut(s) 702, 1398, 1621
BstSLI GKGCMC 1 cut(s) 154
BstUI CGCG 2 cut(s) 991, 1275
BstV1I GCAGC 3 cut(s) 688, 1424, 1564
BstV2I GAAGAC 1 cut(s) 735
BsuRI GGCC 3 cut(s) 681, 788, 994
BtgI CCRYGG 1 cut(s) 312
BtrI CACGTC 1 cut(s) 1040
BtsCI GGATG 2 cut(s) 1082, 1519
BtsIMutI CAGTG 3 cut(s) 94, 381, 1637
Cac8I GCNNGC 4 cut(s) 616, 620, 1657, 1673
CciI TCATGA 2 cut(s) 712, 1011
CfoI GCGC 3 cut(s) 1275, 1310, 1677
Cfr13I GGNCC 2 cut(s) 680, 1481
Csp6I GTAC 3 cut(s) 182, 309, 1531
CspCI CAANNNNNGTGG 2 cut(s) 672, 707
CviAII CATG 5 cut(s) 248, 713, 949, 1012, 1264
CviQI GTAC 3 cut(s) 182, 309, 1531
DdeI CTNAG 4 cut(s) 114, 390, 803, 1487
DpnI GATC 3 cut(s) 140, 436, 1287
DpnII GATC 3 cut(s) 138, 434, 1285
DraIII CACNNNGTG 1 cut(s) 1100
Eco130I CCWWGG 2 cut(s) 53, 260
Eco32I GATATC 2 cut(s) 1141, 1235
Eco47I GGWCC 1 cut(s) 1481
Eco57I CTGAAG 3 cut(s) 405, 858, 1510
Eco88I CYCGRG 1 cut(s) 782
Eco91I GGTNACC 1 cut(s) 886
EcoNI CCTNNNNNAGG 1 cut(s) 1560
EcoO109I RGGNCCY 1 cut(s) 1481
EcoO65I GGTNACC 1 cut(s) 886
EcoRI GAATTC 1 cut(s) 651
EcoRII CCWGG 4 cut(s) 526, 748, 1131, 1404
EcoRV GATATC 2 cut(s) 1141, 1235
EcoT14I CCWWGG 2 cut(s) 53, 260
ErhI CCWWGG 2 cut(s) 53, 260
FaeI CATG 5 cut(s) 251, 716, 952, 1015, 1267
FalI AAGNNNNNCTT 4 cut(s) 356, 388, 1233, 1265
FatI CATG 5 cut(s) 247, 712, 948, 1011, 1263
FauNDI CATATG 2 cut(s) 238, 955
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 6 cut(s) 94, 97, 702, 992, 1413, 1578
FokI GGATG 2 cut(s) 1089, 1506
Fsp4HI GCNGC 6 cut(s) 94, 97, 702, 992, 1413, 1578
FspBI CTAG 8 cut(s) 33, 54, 261, 443, 615, 1046, 1311, 1734
GlaI GCGC 3 cut(s) 1274, 1309, 1676
GluI GCNGC 6 cut(s) 94, 97, 702, 992, 1413, 1578
GsuI CTGGAG 1 cut(s) 897
HaeII RGCGCY 1 cut(s) 1311
HaeIII GGCC 3 cut(s) 681, 788, 994
HapII CCGG 2 cut(s) 789, 1599
HhaI GCGC 3 cut(s) 1275, 1310, 1677
Hin1II CATG 5 cut(s) 251, 716, 952, 1015, 1267
Hin6I GCGC 3 cut(s) 1273, 1308, 1675
HinP1I GCGC 3 cut(s) 1273, 1308, 1675
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HinfI GANTC 7 cut(s) 15, 128, 220, 822, 1015, 1373, 1730
HpaII CCGG 2 cut(s) 789, 1599
HphI GGTGA 4 cut(s) 271, 1112, 1577, 1613
Hpy166II GTNNAC 4 cut(s) 152, 279, 472, 975
Hpy8I GTNNAC 4 cut(s) 152, 279, 472, 975
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 9 cut(s) 166, 550, 637, 1288, 1415, 1472, 1496, 1534, 1719
HpyCH4III ACNGT 6 cut(s) 313, 592, 628, 1192, 1451, 1625
HpyCH4IV ACGT 1 cut(s) 1039
HpyCH4V TGCA 9 cut(s) 152, 410, 704, 1094, 1267, 1316, 1412, 1580, 1655
HpyF10VI GCNNNNNNNGC 2 cut(s) 1409, 1433
HpyF3I CTNAG 4 cut(s) 114, 390, 803, 1487
HpySE526I ACGT 1 cut(s) 1039
Hsp92II CATG 5 cut(s) 251, 716, 952, 1015, 1267
HspAI GCGC 3 cut(s) 1273, 1308, 1675
KpnI GGTACC 1 cut(s) 312
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 138, 434, 1285
LmnI GCTCC 7 cut(s) 316, 324, 500, 878, 1246, 1330, 1558
Lsp1109I GCAGC 3 cut(s) 688, 1424, 1564
LweI GCATC 4 cut(s) 397, 559, 1260, 1546
MaeI CTAG 8 cut(s) 33, 54, 261, 443, 615, 1046, 1311, 1734
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 5 cut(s) 298, 344, 886, 1062, 1079
MalI GATC 3 cut(s) 140, 436, 1287
MboI GATC 3 cut(s) 138, 434, 1285
MfeI CAATTG 1 cut(s) 1614
MhlI GDGCHC 1 cut(s) 154
MlyI GAGTC 2 cut(s) 122, 229
MmeI TCCRAC 1 cut(s) 652
MroXI GAANNNNTTC 4 cut(s) 8, 339, 846, 1729
MseI TTAA 4 cut(s) 215, 510, 768, 864
MslI CAYNNNNRTG 2 cut(s) 717, 1268
MspA1I CMGCKG 1 cut(s) 1328
MspCI CTTAAG 1 cut(s) 214
MspI CCGG 2 cut(s) 789, 1599
MspR9I CCNGG 5 cut(s) 528, 750, 1133, 1406, 1599
MunI CAATTG 1 cut(s) 1614
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 4 cut(s) 528, 750, 1133, 1406
MvnI CGCG 2 cut(s) 991, 1275
MwoI GCNNNNNNNGC 2 cut(s) 1409, 1433
NciI CCSGG 1 cut(s) 1599
NdeI CATATG 2 cut(s) 238, 955
NdeII GATC 3 cut(s) 138, 434, 1285
NheI GCTAGC 1 cut(s) 614
NlaIII CATG 5 cut(s) 251, 716, 952, 1015, 1267
NlaIV GGNNCC 4 cut(s) 310, 318, 1426, 1517
NmuCI GTSAC 1 cut(s) 1079
NspI RCATGY 1 cut(s) 1267
PaeR7I CTCGAG 1 cut(s) 782
PagI TCATGA 2 cut(s) 712, 1011
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 605
PdmI GAANNNNTTC 4 cut(s) 8, 339, 846, 1729
PfeI GAWTC 5 cut(s) 15, 822, 1015, 1373, 1730
PflFI GACNNNGTC 2 cut(s) 734, 1085
PfoI TCCNGGA 1 cut(s) 1131
PkrI GCNGC 6 cut(s) 95, 98, 703, 993, 1414, 1579
PleI GAGTC 2 cut(s) 122, 228
PpsI GAGTC 2 cut(s) 122, 228
PpuMI RGGWCCY 1 cut(s) 1481
PshBI ATTAAT 1 cut(s) 864
Psp5II RGGWCCY 1 cut(s) 1481
Psp6I CCWGG 4 cut(s) 526, 748, 1131, 1404
PspEI GGTNACC 1 cut(s) 886
PspGI CCWGG 4 cut(s) 526, 748, 1131, 1404
PspN4I GGNNCC 4 cut(s) 310, 318, 1426, 1517
PspPI GGNCC 2 cut(s) 680, 1481
PspPPI RGGWCCY 1 cut(s) 1481
PstI CTGCAG 1 cut(s) 706
PsyI GACNNNGTC 2 cut(s) 734, 1085
RsaI GTAC 3 cut(s) 183, 310, 1532
RsaNI GTAC 3 cut(s) 182, 309, 1531
RseI CAYNNNNRTG 2 cut(s) 717, 1268
SaqAI TTAA 4 cut(s) 215, 510, 768, 864
SatI GCNGC 6 cut(s) 94, 97, 702, 992, 1413, 1578
Sau3AI GATC 3 cut(s) 138, 434, 1285
Sau96I GGNCC 2 cut(s) 680, 1481
SchI GAGTC 2 cut(s) 122, 229
ScrFI CCNGG 5 cut(s) 528, 750, 1133, 1406, 1599
SduI GDGCHC 1 cut(s) 154
SfaNI GCATC 4 cut(s) 397, 559, 1260, 1546
SfcI CTRYAG 3 cut(s) 702, 1398, 1621
Sfr274I CTCGAG 1 cut(s) 782
SinI GGWCC 1 cut(s) 1481
SlaI CTCGAG 1 cut(s) 782
SmiMI CAYNNNNRTG 2 cut(s) 717, 1268
SmlI CTYRAG 5 cut(s) 214, 398, 782, 1239, 1416
SmoI CTYRAG 5 cut(s) 214, 398, 782, 1239, 1416
SsiI CCGC 4 cut(s) 93, 96, 991, 1328
SspI AATATT 1 cut(s) 67
SspMI CTAG 8 cut(s) 33, 54, 261, 443, 615, 1046, 1311, 1734
StyD4I CCNGG 5 cut(s) 526, 748, 1131, 1404, 1597
StyI CCWWGG 2 cut(s) 53, 260
TaaI ACNGT 6 cut(s) 313, 592, 628, 1192, 1451, 1625
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 2 cut(s) 783, 1495
TatI WGTACW 1 cut(s) 181
TauI GCSGC 3 cut(s) 96, 99, 994
TfiI GAWTC 5 cut(s) 15, 822, 1015, 1373, 1730
Tru1I TTAA 4 cut(s) 215, 510, 768, 864
Tru9I TTAA 4 cut(s) 215, 510, 768, 864
TscAI CASTG 3 cut(s) 94, 388, 1637
TseFI GTSAC 1 cut(s) 1079
TseI GCWGC 3 cut(s) 701, 1412, 1577
Tsp45I GTSAC 1 cut(s) 1079
TspGWI ACGGA 2 cut(s) 32, 842
TspRI CASTG 3 cut(s) 94, 388, 1637
Tth111I GACNNNGTC 2 cut(s) 734, 1085
Vha464I CTTAAG 1 cut(s) 214
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 1481
VspI ATTAAT 1 cut(s) 864
XagI CCTNNNNNAGG 1 cut(s) 1560
XapI RAATTY 5 cut(s) 229, 461, 651, 845, 939
XbaI TCTAGA 2 cut(s) 32, 442
XceI RCATGY 1 cut(s) 1267
XhoI CTCGAG 1 cut(s) 782
XmaJI CCTAGG 2 cut(s) 53, 260
XmnI GAANNNNTTC 4 cut(s) 8, 339, 846, 1729
XspI CTAG 8 cut(s) 33, 54, 261, 443, 615, 1046, 1311, 1734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.