RchiOBHm_Chr5g0015461

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000110
Physical Location & Seq
Forward (+)
10720472 .. 10720810
339 bp
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UTR
Exon/CDS
Intron
PRQ29588

Sequence Viewer

Length: 339 bp
ATGGAATGGCTCATGGATGAAGAGCAACACCAAACTGTTATATCTGTGGTTGGGATGGGTGGTTCTGGAAAGACAACTCTAGTTTCCAAGACCTTCACCAATGAAAAGGTAAAAAGACATTTCGACTGTTGTGCATGGATTACCGCTTCCCAAACTTATGTTGTGGTAGACTTGTTTCGAAGCTTGATCATAGAACTCCACAAATCAAGGAAGGAAGAGTACCCTGCAAACTCAAATGCCATAAGCCGCATAGAATTGCTAGAGTTATTGACGAAGTACTTGGAGTCTAAAAAATACCTAGTTGTTCTAGATGACGTGTGGGAGATTGGAGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

112

Amino Acids

12.94

Weight (kDa)

5.6

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 2 - 108 6.8e-28 NB-ARC domain
nSTAND6 PF25201 9 - 105 9.1e-08 Novel STAND NTPase 6
AAA_16 PF13191 12 - 106 5.8e-06 AAA ATPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AciI CCGC 2 cut(s) 144, 247
AfaI GTAC 2 cut(s) 221, 278
AflIII ACRYGT 1 cut(s) 315
AjiI CACGTC 1 cut(s) 316
AloI GAACNNNNNNTCC 2 cut(s) 46, 78
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 178
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BccI CCATC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BclI TGATCA 1 cut(s) 186
BfaI CTAG 4 cut(s) 80, 260, 299, 308
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
BmcAI AGTACT 1 cut(s) 278
BmgBI CACGTC 1 cut(s) 316
Bpu14I TTCGAA 1 cut(s) 178
BseGI GGATG 2 cut(s) 22, 60
Bsp119I TTCGAA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 2 cut(s) 144, 247
BspQI GCTCTTC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 178
BssMI GATC 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 37, 128
Bst6I CTCTTC 2 cut(s) 15, 210
BstBI TTCGAA 1 cut(s) 178
BstF5I GGATG 2 cut(s) 22, 60
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 2 cut(s) 22, 60
Csp6I GTAC 2 cut(s) 220, 277
CviAII CATG 2 cut(s) 13, 135
CviJI RGCY 3 cut(s) 10, 183, 246
CviKI_1 RGCY 3 cut(s) 10, 183, 246
CviQI GTAC 2 cut(s) 220, 277
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 15, 210
EarI CTCTTC 2 cut(s) 15, 210
FaeI CATG 2 cut(s) 16, 138
FaiI YATR 7 cut(s) 14, 41, 136, 159, 191, 242, 251
FatI CATG 2 cut(s) 12, 134
FbaI TGATCA 1 cut(s) 186
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 247
FokI GGATG 2 cut(s) 29, 67
Fsp4HI GCNGC 1 cut(s) 247
FspBI CTAG 4 cut(s) 80, 260, 299, 308
GluI GCNGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 16, 138
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 1 cut(s) 284
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 66, 308
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 103, 205
HpyCH4III ACNGT 2 cut(s) 37, 128
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 2 cut(s) 134, 227
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 16, 138
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 1 cut(s) 186
LguI GCTCTTC 1 cut(s) 15
LpnPI CCDG 2 cut(s) 51, 237
MaeI CTAG 4 cut(s) 80, 260, 299, 308
MaeII ACGT 1 cut(s) 315
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 2 cut(s) 32, 227
MluCI AATT 1 cut(s) 254
MlyI GAGTC 1 cut(s) 293
NdeII GATC 1 cut(s) 186
NlaIII CATG 2 cut(s) 16, 138
NspV TTCGAA 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 248
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
RsaI GTAC 2 cut(s) 221, 278
RsaNI GTAC 2 cut(s) 220, 277
SapI GCTCTTC 1 cut(s) 15
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 1 cut(s) 186
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 293
SetI ASST 5 cut(s) 95, 111, 185, 300, 318
SfuI TTCGAA 1 cut(s) 178
Sse9I AATT 1 cut(s) 254
SsiI CCGC 2 cut(s) 144, 247
SspMI CTAG 4 cut(s) 80, 260, 299, 308
TaaI ACNGT 2 cut(s) 37, 128
TaiI ACGT 1 cut(s) 318
TaqI TCGA 2 cut(s) 123, 178
TasI AATT 1 cut(s) 254
TatI WGTACW 1 cut(s) 276
TauI GCSGC 1 cut(s) 249
TspDTI ATGAA 2 cut(s) 33, 117
XbaI TCTAGA 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 4 cut(s) 80, 260, 299, 308
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.