RchiOBHm_Chr5g0018451

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000110
Physical Location & Seq
Forward (+)
12986971 .. 12987641
671 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29866

Sequence Viewer

Length: 513 bp
ATGACTCAACTTAAGAGAATCGGCATATCGAATGTCAAAGAAAGAGATGAGAATGACCTTTGGGTCTCTGTTGAAAAGTTGACTATGCTTCAATCTCTGGATTTAATGGCGAGTAATGAAGATGAAATTCTTCCAGTGAAAGCACAATGTCCGCCTCTTCTGCACTTTCAAAAGCTTCATTTGATTGGTAGATTGCAATGCAAAACAGGCTTTGTAAAGATGGAGAGGTTGGAGTTGTTGAACTTTGCCTCTGTGAAAAAGATAACTATAGAAAAAGGGGTGATGCCAAATCTCCGGTACTTATTGGTTTACAACTTCATGGAATTGAAGACGGTACCATTAGGCCTTGAATGCCTTTCTAATATACAATATTTGGGCCTGGCATTTGTTCCTGTTGAAGTTATACAGCCCATTTGGAAAGGAGGTGAGGATCGCTCTAAAGTACAACACATTCATGAGATCATACATGTTTTCAAACAATCATCTAAGTGGGTCCACGAAAACTTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

170

Amino Acids

19.63

Weight (kDa)

8.41

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
Acc65I GGTACC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 334
AciI CCGC 1 cut(s) 152
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 3 cut(s) 299, 336, 444
AflII CTTAAG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 8 cut(s) 74, 92, 170, 241, 328, 350, 398, 475
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 1 cut(s) 438
AoxI GGCC 3 cut(s) 343, 376, 507
ApoI RAATTY 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 129
Asp718I GGTACC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 376, 493
AsuHPI GGTGA 2 cut(s) 292, 437
AvaII GGWCC 1 cut(s) 493
BanI GGYRCC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 335
BccI CCATC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 511
BfmI CTRYAG 1 cut(s) 267
BfrI CTTAAG 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 493
BmgT120I GGNCC 2 cut(s) 376, 493
BmiI GGNNCC 2 cut(s) 336, 494
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 335
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BsaI GGTCTC 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 146
BshFI GGCC 3 cut(s) 345, 378, 509
BshNI GGYRCC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 3 cut(s) 345, 378, 509
Bso31I GGTCTC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 430, 459
BspACI CCGC 1 cut(s) 152
BspANI GGCC 3 cut(s) 345, 378, 509
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 336, 494
BspPI GGATC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 334
BspTI CTTAAG 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 203
BsrI ACTGG 1 cut(s) 134
BssMI GATC 2 cut(s) 430, 459
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 162
BstAFI CTTAAG 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 486
BstKTI GATC 2 cut(s) 433, 462
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 430, 459
BstMWI GCNNNNNNNGC 3 cut(s) 160, 207, 351
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 335
BsuRI GGCC 3 cut(s) 345, 378, 509
BtsIMutI CAGTG 1 cut(s) 141
CciI TCATGA 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 376, 493
Csp6I GTAC 3 cut(s) 298, 335, 443
CviAII CATG 3 cut(s) 319, 455, 467
CviJI RGCY 6 cut(s) 175, 210, 345, 378, 409, 509
CviKI_1 RGCY 6 cut(s) 175, 210, 345, 378, 409, 509
CviQI GTAC 3 cut(s) 298, 335, 443
DdeI CTNAG 1 cut(s) 486
DpnI GATC 2 cut(s) 432, 461
DpnII GATC 2 cut(s) 430, 459
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 493
EcoRII CCWGG 1 cut(s) 378
FaeI CATG 3 cut(s) 322, 458, 470
FaiI YATR 9 cut(s) 26, 86, 269, 320, 365, 404, 456, 464, 468
FatI CATG 3 cut(s) 318, 454, 466
FspBI CTAG 1 cut(s) 511
HaeIII GGCC 3 cut(s) 345, 378, 509
HapII CCGG 1 cut(s) 295
Hin1II CATG 3 cut(s) 322, 458, 470
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 4, 18
HpaII CCGG 1 cut(s) 295
HphI GGTGA 2 cut(s) 292, 437
Hpy166II GTNNAC 3 cut(s) 81, 310, 496
Hpy188III TCNNGA 2 cut(s) 98, 455
Hpy8I GTNNAC 3 cut(s) 81, 310, 496
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 3 cut(s) 163, 196, 201
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 207, 351
HpyF3I CTNAG 1 cut(s) 486
Hsp92II CATG 3 cut(s) 322, 458, 470
KpnI GGTACC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 430, 459
LpnPI CCDG 7 cut(s) 83, 147, 192, 308, 365, 392, 405
LweI GCATC 1 cut(s) 273
MaeI CTAG 1 cut(s) 511
MalI GATC 2 cut(s) 432, 461
MboI GATC 2 cut(s) 430, 459
MboII GAAGA 4 cut(s) 122, 131, 149, 340
MluCI AATT 2 cut(s) 126, 323
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 5 cut(s) 165, 219, 259, 416, 421
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 2 cut(s) 12, 104
MslI CAYNNNNRTG 2 cut(s) 453, 487
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 380
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 160, 207, 351
NdeII GATC 2 cut(s) 430, 459
NlaIII CATG 3 cut(s) 322, 458, 470
NlaIV GGNNCC 2 cut(s) 336, 494
NspI RCATGY 1 cut(s) 470
PagI TCATGA 1 cut(s) 454
PceI AGGCCT 1 cut(s) 345
PciI ACATGT 1 cut(s) 466
PctI GAATGC 1 cut(s) 356
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 18
PscI ACATGT 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 336, 494
PspPI GGNCC 2 cut(s) 376, 493
RsaI GTAC 3 cut(s) 299, 336, 444
RsaNI GTAC 3 cut(s) 298, 335, 443
RseI CAYNNNNRTG 2 cut(s) 453, 487
SaqAI TTAA 2 cut(s) 12, 104
Sau3AI GATC 2 cut(s) 430, 459
Sau96I GGNCC 2 cut(s) 376, 493
ScrFI CCNGG 1 cut(s) 380
SetI ASST 4 cut(s) 60, 177, 230, 427
SfaNI GCATC 1 cut(s) 273
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 493
SmiMI CAYNNNNRTG 2 cut(s) 453, 487
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 2 cut(s) 126, 323
SseBI AGGCCT 1 cut(s) 345
SsiI CCGC 1 cut(s) 152
SspI AATATT 1 cut(s) 371
SspMI CTAG 1 cut(s) 511
StuI AGGCCT 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 334
TaqI TCGA 1 cut(s) 29
TasI AATT 2 cut(s) 126, 323
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 2 cut(s) 12, 104
Tru9I TTAA 2 cut(s) 12, 104
TscAI CASTG 1 cut(s) 141
TspDTI ATGAA 5 cut(s) 132, 138, 167, 307, 443
TspRI CASTG 1 cut(s) 141
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 1 cut(s) 126
XceI RCATGY 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.