Rmu_sc0002311.1_g000024

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002311.1
OG0000110
Physical Location & Seq
Forward (+)
140429 .. 143325
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002311.1_g000024.1.cds

Sequence Viewer

Length: 2778 bp
atgaaagctttcctactggatgcggaggccaacaaaccaaaaactgaaggacagaaattgtgggttgcaagaatcagagacttggcctatgatgttgaagatatcattgatgaattcatgtatcacatgtatgagaagcaaactgcgcgtcgactttcaagggggctacacaattccattcgcgctccatgcaatctttggttcaggcataaaattgcaaagaagttgcggaaaattactgacatgatcaaagccattccagagaggaataaaagatacggtgttggccttgtaggaggagcaactacatccgaagatcttcagaaattggtgcagaaccaagcggagtcttcgttttacattatggaagacgaactggttgggattgaaggcaagaagcaaatactaatgggatggctaatggatgatgagcaacaccaaactgttatatctgtggtgggcatgggaggttctggaaagacaactctagttgccaagaccttcaccaatgaattggtaaagagacattttgattgttatgcatggattactgtttcccaaacttatgatgtggtacacttgtttcgaagcttgatcagggaactctacaaatcaaggaaggaaaatttccctgcaattctgaatgccatgagccgcatagaattgctagagttactagttaactacttggagtccaaaaaatacctagttgttctagatgacgtgtgggatataaaagtatggagagaaataaaggtatcacttcaagatagacaacttggaagtcgagtcgtacttacaactcgaaatgaagaagtagcatccaactcttttggagttgaaagctatatttaccgtattcagcccctgcaaaagaaggaggcttgggaactcttcagcaggaaagcattctcaactaagcaacacaaaacttgtccaactgagctgaagtctttagcttgccaacttgtggagaggtgtgaaggtcttcctctcggtattgtgtctttagctggtcttatgtcatctaagaagtcgctggatcaatggcaacaagtctgcaacaacttgaattggtatctacataacaattcatcgctagacactgtgagaaacattttgttgttgagtttcactgatttgccatctcaactgaagcattgcttcctctattgttccctttttccagaagattatctatttaatacaaaaaggctgactagattgtggatagcagaaggatttgttgaaaatgtgaaaggggtcacgcctgaagaagttgcaggtgcctatcttcgggaactctgcttccgtagcatgttacaatttgcagatggctttgtttccggatcacctttgggaaggctgagaaaacttaaggtgcatgatctgatgcgagagcttgctttgtcgactgccgaaaaagaaaagtttggttatgtatacgacgggagagaagtaatggaagagatctcaacccgtcgcttatcaattcatagaatgaaaggagaaatcaaatcatggaggggtgtgtcaaagattcgttctcttcttgtatttgacactgacatgttctcattgtctttcttaaatacactggtttctcgattcaaattgttgaggactctagacttggaggatgtccaaattgataaactgccggctgcaattgtttacatgttcaacttgagatatttaaatttgaagggcactttaatcgaggaacttccagagtccataaggcgtctccgcaaccttcaatttctgaacatcagagatactaagatagagtcacttccacaaggaattaagagattgctgaacctgcggaatctaattatgtatcgctacactagggacctgtacttcaaagttgctagtgggacaaaagcgccatcaaatatttgtaaagatactaagatagagtcacttccacaaggaattaagaggttgctgaacctgcggcatctaattatgtatcgctacactagggacctgtacttcaaagctgcttgtgggacaaaagcgccatcaaatatttgtgagttccagaaattgcaaaatttatcaataattgaatcagaaggggacacttgcagacttgtcggcaacatgactcaacttaagtacatcggcatatccaatgtgaaagaaagagatcagattgacctttgggtctcaattaagaagttgactctgcttcaatctctaggtttattggcaagtaatgaagaggaaatccttccggtgaaagcacaatgtccacctcttcctcaccttcggaagcttaatttggttggcagactgcaaaacgtaataccttggttttcttcactgcatagcctcacagctctggttctgcattggtcaagacttgaagatgatttactacctcaaattgaagcactgcgcaatctgacaaggctttatctttgtaatgcatatgttggggaagagttgtgtttccgcagaggctttgtaatgctgatgaggttggagttgttgaattttgcctcggtgaaaaagataactatagaaaatggggtgatgccaaatctccggtacttatgcgttaacagtttcatggagttaaagacggtgccgctgggctttgaatacctttctaccctacaatatttgggcctgaaagatgttcccatggaagttattaggtccattcagaaaggaggtgtggatcactctaaagtacaacacattcctgagatcatacatgtttttgaacagtcatccaagtggatccacgaaaacttggcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

925

Amino Acids

107.08

Weight (kDa)

9.23

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1274
AasI GACNNNNNNGTC 1 cut(s) 2174
Acc16I TGCGCA 1 cut(s) 2411
Acc36I ACCTGC 3 cut(s) 1274, 1833, 1968
AccB1I GGYRCC 2 cut(s) 1286, 2599
AccB7I CCANNNNNTGG 1 cut(s) 970
AccI GTMKAC 3 cut(s) 151, 1412, 1443
AccII CGCG 2 cut(s) 148, 183
AccIII TCCGGA 1 cut(s) 1346
AciI CCGC 9 cut(s) 23, 229, 344, 655, 1750, 1828, 1963, 2467, 2603
AclWI GGATC 5 cut(s) 1050, 1357, 2703, 2752, 2765
AcsI RAATTY 5 cut(s) 113, 625, 1699, 2062, 2506
AcuI CTGAAG 6 cut(s) 66, 305, 880, 968, 1175, 1293
AcyI GRCGYC 1 cut(s) 1744
AfaI GTAC 7 cut(s) 576, 795, 1865, 2000, 2129, 2564, 2709
AfiI CCNNNNNNNGG 2 cut(s) 970, 1296
AflII CTTAAG 2 cut(s) 1376, 2123
AflIII ACRYGT 5 cut(s) 126, 723, 1569, 1677, 2731
AhlI ACTAGT 1 cut(s) 676
AjiI CACGTC 1 cut(s) 724
AjuI GAANNNNNNNTTGG 2 cut(s) 2276, 2308
AloI GAACNNNNNNTCC 2 cut(s) 1293, 1325
Alw26I GTCTC 4 cut(s) 72, 517, 1751, 2182
AlwI GGATC 5 cut(s) 1050, 1357, 2703, 2752, 2765
AlwNI CAGNNNCTG 1 cut(s) 868
Aor13HI TCCGGA 1 cut(s) 1346
AoxI GGCC 5 cut(s) 27, 84, 286, 2641, 2772
ApeKI GCWGC 2 cut(s) 1664, 2009
ApoI RAATTY 5 cut(s) 113, 625, 1699, 2062, 2506
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
Asp700I GAANNNNTTC 5 cut(s) 8, 318, 908, 987, 2241
AspLEI GCGC 5 cut(s) 148, 185, 1894, 2029, 2412
AspS9I GGNCC 4 cut(s) 1858, 1993, 2641, 2673
AsuHPI GGTGA 6 cut(s) 496, 1344, 2260, 2267, 2530, 2557
AsuII TTCGAA 1 cut(s) 586
AvaII GGWCC 3 cut(s) 1858, 1993, 2673
BaeGI GKGCMC 1 cut(s) 1712
BaeI ACNNNNGTAYC 2 cut(s) 566, 599
BamHI GGATCC 1 cut(s) 2757
BanI GGYRCC 2 cut(s) 1286, 2599
BarI GAAGNNNNNNTAC 2 cut(s) 2370, 2402
BbsI GAAGAC 3 cut(s) 342, 375, 980
BbvI GCAGC 2 cut(s) 1651, 1996
BccI CCATC 5 cut(s) 408, 1153, 1328, 1903, 2038
BcgI CGANNNNNNTGC 4 cut(s) 1699, 1733, 2086, 2120
BclI TGATCA 2 cut(s) 246, 594
BcoDI GTCTC 4 cut(s) 72, 517, 1751, 2182
BcuI ACTAGT 1 cut(s) 676
BfmI CTRYAG 1 cut(s) 2532
BfoI RGCGCY 2 cut(s) 1895, 2030
BfrI CTTAAG 2 cut(s) 1376, 2123
BfuAI ACCTGC 3 cut(s) 1274, 1833, 1968
BglII AGATCT 2 cut(s) 316, 1470
BisI GCNGC 5 cut(s) 655, 1665, 1964, 2010, 2603
BlsI GCNGC 5 cut(s) 656, 1666, 1965, 2011, 2604
Bme18I GGWCC 3 cut(s) 1858, 1993, 2673
BmgBI CACGTC 1 cut(s) 724
BmgT120I GGNCC 4 cut(s) 1858, 1993, 2641, 2673
BmiI GGNNCC 5 cut(s) 1288, 1859, 1994, 2601, 2759
BmsI GCATC 5 cut(s) 10, 830, 1383, 1975, 2538
BpiI GAAGAC 3 cut(s) 342, 375, 980
Bpu14I TTCGAA 1 cut(s) 586
BpuEI CTTGAG 1 cut(s) 1708
BsaHI GRCGYC 1 cut(s) 1744
BsaI GGTCTC 1 cut(s) 2182
BsaJI CCNNGG 3 cut(s) 2321, 2514, 2658
BsaWI WCCGGW 3 cut(s) 1346, 2245, 2559
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 2 cut(s) 970, 1296
Bse118I RCCGGY 1 cut(s) 1660
Bse1I ACTGG 3 cut(s) 21, 381, 1602
Bse3DI GCAATG 1 cut(s) 1159
BseAI TCCGGA 1 cut(s) 1346
BseDI CCNNGG 3 cut(s) 2321, 2514, 2658
BseGI GGATG 7 cut(s) 25, 308, 419, 430, 821, 1645, 2747
BseLI CCNNNNNNNGG 2 cut(s) 970, 1296
BseMI GCAATG 1 cut(s) 1159
BseMII CTCAG 3 cut(s) 933, 1358, 2712
BseNI ACTGG 3 cut(s) 21, 381, 1602
BseRI GAGGAG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 1712
BseXI GCAGC 2 cut(s) 1651, 1996
BseYI CCCAGC 1 cut(s) 2605
BsgI GTGCAG 1 cut(s) 353
Bsh1236I CGCG 2 cut(s) 148, 183
BshFI GGCC 5 cut(s) 29, 86, 288, 2643, 2774
BshNI GGYRCC 2 cut(s) 1286, 2599
BsiSI CCGG 4 cut(s) 1347, 1661, 2246, 2560
BslFI GGGAC 5 cut(s) 1871, 1897, 2006, 2032, 2102
BslI CCNNNNNNNGG 2 cut(s) 970, 1296
BsmAI GTCTC 4 cut(s) 72, 517, 1751, 2182
BsmBI CGTCTC 1 cut(s) 1751
BsmFI GGGAC 5 cut(s) 1871, 1897, 2006, 2032, 2102
BsmI GAATGC 2 cut(s) 649, 908
BsnI GGCC 5 cut(s) 29, 86, 288, 2643, 2774
Bso31I GGTCTC 1 cut(s) 2182
Bsp119I TTCGAA 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 1712
Bsp13I TCCGGA 1 cut(s) 1346
Bsp19I CCATGG 1 cut(s) 2658
BspACI CCGC 9 cut(s) 23, 229, 344, 655, 1750, 1828, 1963, 2467, 2603
BspANI GGCC 5 cut(s) 29, 86, 288, 2643, 2774
BspCNI CTCAG 3 cut(s) 934, 1359, 2713
BspEI TCCGGA 1 cut(s) 1346
BspFNI CGCG 2 cut(s) 148, 183
BspLI GGNNCC 5 cut(s) 1288, 1859, 1994, 2601, 2759
BspMI ACCTGC 3 cut(s) 1274, 1833, 1968
BspPI GGATC 5 cut(s) 1050, 1357, 2703, 2752, 2765
BspT104I TTCGAA 1 cut(s) 586
BspT107I GGYRCC 2 cut(s) 1286, 2599
BspTI CTTAAG 2 cut(s) 1376, 2123
BspTNI GGTCTC 1 cut(s) 2182
BsrDI GCAATG 1 cut(s) 1159
BsrFI RCCGGY 1 cut(s) 1660
BsrI ACTGG 3 cut(s) 21, 381, 1602
BssAI RCCGGY 1 cut(s) 1660
BssECI CCNNGG 3 cut(s) 2321, 2514, 2658
BssNAI GTATAC 1 cut(s) 1444
BssNI GRCGYC 1 cut(s) 1744
BssT1I CCWWGG 2 cut(s) 2321, 2658
Bst1107I GTATAC 1 cut(s) 1444
Bst4CI ACNGT 8 cut(s) 281, 445, 553, 857, 1108, 2579, 2599, 2745
Bst6I CTCTTC 6 cut(s) 899, 1461, 1554, 2226, 2274, 2448
BstACI GRCGYC 1 cut(s) 1744
BstAFI CTTAAG 2 cut(s) 1376, 2123
BstBI TTCGAA 1 cut(s) 586
BstC8I GCNNGC 3 cut(s) 961, 1404, 1662
BstDEI CTNAG 7 cut(s) 918, 942, 1029, 1367, 1782, 1917, 2721
BstDSI CCRYGG 1 cut(s) 2658
BstF5I GGATG 7 cut(s) 25, 308, 419, 430, 821, 1645, 2747
BstFNI CGCG 2 cut(s) 148, 183
BstH2I RGCGCY 2 cut(s) 1895, 2030
BstHHI GCGC 5 cut(s) 148, 185, 1894, 2029, 2412
BstMAI GTCTC 4 cut(s) 72, 517, 1751, 2182
BstMWI GCNNNNNNNGC 5 cut(s) 145, 189, 1314, 1825, 1960
BstNSI RCATGY 5 cut(s) 130, 1321, 1573, 1681, 2735
BstSFI CTRYAG 1 cut(s) 2532
BstSLI GKGCMC 1 cut(s) 1712
BstUI CGCG 2 cut(s) 148, 183
BstV1I GCAGC 2 cut(s) 1651, 1996
BstV2I GAAGAC 3 cut(s) 342, 375, 980
BstX2I RGATCY 3 cut(s) 316, 1470, 2757
BstXI CCANNNNNNTGG 1 cut(s) 514
BstYI RGATCY 3 cut(s) 316, 1470, 2757
BstZ17I GTATAC 1 cut(s) 1444
BsuRI GGCC 5 cut(s) 29, 86, 288, 2643, 2774
BtgI CCRYGG 1 cut(s) 2658
BtgZI GCGATG 1 cut(s) 1080
BtrI CACGTC 1 cut(s) 724
BtsCI GGATG 7 cut(s) 25, 308, 419, 430, 821, 1645, 2747
BtsI GCAGTG 2 cut(s) 2333, 2405
BtsIMutI CAGTG 6 cut(s) 1104, 1134, 1563, 1595, 2333, 2405
BveI ACCTGC 3 cut(s) 1274, 1833, 1968
Cac8I GCNNGC 3 cut(s) 961, 1404, 1662
CaiI CAGNNNCTG 1 cut(s) 868
CfoI GCGC 5 cut(s) 148, 185, 1894, 2029, 2412
Cfr10I RCCGGY 1 cut(s) 1660
Cfr13I GGNCC 4 cut(s) 1858, 1993, 2641, 2673
CseI GACGC 2 cut(s) 137, 1733
Csp6I GTAC 7 cut(s) 575, 794, 1864, 1999, 2128, 2563, 2708
CviQI GTAC 7 cut(s) 575, 794, 1864, 1999, 2128, 2563, 2708
DdeI CTNAG 7 cut(s) 918, 942, 1029, 1367, 1782, 1917, 2721
DraI TTTAAA 1 cut(s) 1698
DrdI GACNNNNNNGTC 1 cut(s) 2174
DseDI GACNNNNNNGTC 1 cut(s) 2174
Eam1104I CTCTTC 6 cut(s) 899, 1461, 1554, 2226, 2274, 2448
EarI CTCTTC 6 cut(s) 899, 1461, 1554, 2226, 2274, 2448
Eco130I CCWWGG 2 cut(s) 2321, 2658
Eco31I GGTCTC 1 cut(s) 2182
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 3 cut(s) 1858, 1993, 2673
Eco57I CTGAAG 6 cut(s) 66, 305, 880, 968, 1175, 1293
EcoO109I RGGNCCY 2 cut(s) 1858, 1993
EcoRI GAATTC 1 cut(s) 113
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 2321, 2658
EcoT22I ATGCAT 2 cut(s) 544, 2443
ErhI CCWWGG 2 cut(s) 2321, 2658
Esp3I CGTCTC 1 cut(s) 1751
FalI AAGNNNNNCTT 2 cut(s) 1148, 1180
FaqI GGGAC 5 cut(s) 1871, 1897, 2006, 2032, 2102
FauNDI CATATG 1 cut(s) 2443
FbaI TGATCA 2 cut(s) 246, 594
FblI GTMKAC 3 cut(s) 151, 1412, 1443
Fnu4HI GCNGC 5 cut(s) 655, 1665, 1964, 2010, 2603
FokI GGATG 7 cut(s) 32, 295, 426, 437, 808, 1652, 2734
Fsp4HI GCNGC 5 cut(s) 655, 1665, 1964, 2010, 2603
FspI TGCGCA 1 cut(s) 2411
GlaI GCGC 5 cut(s) 147, 184, 1893, 2028, 2411
GluI GCNGC 5 cut(s) 655, 1665, 1964, 2010, 2603
GsaI CCCAGC 1 cut(s) 2609
HaeII RGCGCY 2 cut(s) 1895, 2030
HaeIII GGCC 5 cut(s) 29, 86, 288, 2643, 2774
HapII CCGG 4 cut(s) 1347, 1661, 2246, 2560
HgaI GACGC 2 cut(s) 137, 1733
HhaI GCGC 5 cut(s) 148, 185, 1894, 2029, 2412
Hin1I GRCGYC 1 cut(s) 1744
Hin6I GCGC 5 cut(s) 146, 183, 1892, 2027, 2410
HinP1I GCGC 5 cut(s) 146, 183, 1892, 2027, 2410
HincII GTYRAC 5 cut(s) 152, 682, 1413, 2193, 2575
HindII GTYRAC 5 cut(s) 152, 682, 1413, 2193, 2575
HindIII AAGCTT 3 cut(s) 6, 589, 2285
HpaI GTTAAC 2 cut(s) 682, 2575
HpaII CCGG 4 cut(s) 1347, 1661, 2246, 2560
HphI GGTGA 6 cut(s) 496, 1344, 2260, 2267, 2530, 2557
Hpy166II GTNNAC 9 cut(s) 152, 577, 682, 1413, 1444, 1675, 2193, 2264, 2575
Hpy8I GTNNAC 9 cut(s) 152, 577, 682, 1413, 1444, 1675, 2193, 2264, 2575
Hpy99I CGWCG 3 cut(s) 153, 1451, 1485
HpyCH4III ACNGT 8 cut(s) 281, 445, 553, 857, 1108, 2579, 2599, 2745
HpyCH4IV ACGT 2 cut(s) 723, 2313
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 189, 1314, 1825, 1960
HpyF3I CTNAG 7 cut(s) 918, 942, 1029, 1367, 1782, 1917, 2721
HpySE526I ACGT 2 cut(s) 723, 2313
Hsp92I GRCGYC 1 cut(s) 1744
HspAI GCGC 5 cut(s) 146, 183, 1892, 2027, 2410
Kpn2I TCCGGA 1 cut(s) 1346
KroI GCCGGC 1 cut(s) 1660
KroNI GCCGGC 1 cut(s) 1662
Ksp22I TGATCA 2 cut(s) 246, 594
KspAI GTTAAC 2 cut(s) 682, 2575
LmnI GCTCC 2 cut(s) 190, 299
Lsp1109I GCAGC 2 cut(s) 1651, 1996
LweI GCATC 5 cut(s) 10, 830, 1383, 1975, 2538
MaeII ACGT 2 cut(s) 723, 2313
MaeIII GTNAC 5 cut(s) 672, 1264, 1320, 1791, 1926
MfeI CAATTG 1 cut(s) 1668
MflI RGATCY 3 cut(s) 316, 1470, 2757
MhlI GDGCHC 1 cut(s) 1712
MlyI GAGTC 9 cut(s) 356, 701, 798, 1618, 1742, 1799, 1934, 2110, 2188
MmeI TCCRAC 3 cut(s) 849, 962, 2475
Mph1103I ATGCAT 2 cut(s) 544, 2443
MroI TCCGGA 1 cut(s) 1346
MroNI GCCGGC 1 cut(s) 1660
MroXI GAANNNNTTC 5 cut(s) 8, 318, 908, 987, 2241
MslI CAYNNNNRTG 3 cut(s) 129, 1568, 2752
MspA1I CMGCKG 1 cut(s) 2605
MspCI CTTAAG 2 cut(s) 1376, 2123
MspI CCGG 4 cut(s) 1347, 1661, 2246, 2560
MunI CAATTG 1 cut(s) 1668
Mva1269I GAATGC 2 cut(s) 649, 908
MvnI CGCG 2 cut(s) 148, 183
MwoI GCNNNNNNNGC 5 cut(s) 145, 189, 1314, 1825, 1960
NaeI GCCGGC 1 cut(s) 1662
NcoI CCATGG 1 cut(s) 2658
NdeI CATATG 1 cut(s) 2443
NgoMIV GCCGGC 1 cut(s) 1660
NlaIV GGNNCC 5 cut(s) 1288, 1859, 1994, 2601, 2759
NmuCI GTSAC 3 cut(s) 1264, 1791, 1926
NsbI TGCGCA 1 cut(s) 2411
NsiI ATGCAT 2 cut(s) 544, 2443
NspI RCATGY 5 cut(s) 130, 1321, 1573, 1681, 2735
NspV TTCGAA 1 cut(s) 586
PaqCI CACCTGC 1 cut(s) 1274
PciI ACATGT 4 cut(s) 126, 1569, 1677, 2731
PctI GAATGC 2 cut(s) 649, 908
PdiI GCCGGC 1 cut(s) 1662
PdmI GAANNNNTTC 5 cut(s) 8, 318, 908, 987, 2241
PfeI GAWTC 5 cut(s) 72, 1540, 1608, 1831, 2078
PflMI CCANNNNNTGG 1 cut(s) 970
PkrI GCNGC 5 cut(s) 656, 1666, 1965, 2011, 2604
PleI GAGTC 9 cut(s) 355, 700, 797, 1618, 1741, 1798, 1933, 2110, 2188
PpsI GAGTC 9 cut(s) 355, 700, 797, 1618, 1741, 1798, 1933, 2110, 2188
PpuMI RGGWCCY 2 cut(s) 1858, 1993
PscI ACATGT 4 cut(s) 126, 1569, 1677, 2731
Psp5II RGGWCCY 2 cut(s) 1858, 1993
PspFI CCCAGC 1 cut(s) 2605
PspN4I GGNNCC 5 cut(s) 1288, 1859, 1994, 2601, 2759
PspPI GGNCC 4 cut(s) 1858, 1993, 2641, 2673
PspPPI RGGWCCY 2 cut(s) 1858, 1993
PstNI CAGNNNCTG 1 cut(s) 868
PsuI RGATCY 3 cut(s) 316, 1470, 2757
RsaI GTAC 7 cut(s) 576, 795, 1865, 2000, 2129, 2564, 2709
RsaNI GTAC 7 cut(s) 575, 794, 1864, 1999, 2128, 2563, 2708
RseI CAYNNNNRTG 3 cut(s) 129, 1568, 2752
SalI GTCGAC 2 cut(s) 150, 1411
SatI GCNGC 5 cut(s) 655, 1665, 1964, 2010, 2603
Sau96I GGNCC 4 cut(s) 1858, 1993, 2641, 2673
SchI GAGTC 9 cut(s) 356, 701, 798, 1618, 1742, 1799, 1934, 2110, 2188
SduI GDGCHC 1 cut(s) 1712
SfaNI GCATC 5 cut(s) 10, 830, 1383, 1975, 2538
SfcI CTRYAG 1 cut(s) 2532
SfuI TTCGAA 1 cut(s) 586
SinI GGWCC 3 cut(s) 1858, 1993, 2673
SmiI ATTTAAAT 1 cut(s) 1698
SmiMI CAYNNNNRTG 3 cut(s) 129, 1568, 2752
SmlI CTYRAG 3 cut(s) 1376, 1687, 2123
SmoI CTYRAG 3 cut(s) 1376, 1687, 2123
SpeI ACTAGT 1 cut(s) 676
SsiI CCGC 9 cut(s) 23, 229, 344, 655, 1750, 1828, 1963, 2467, 2603
SspI AATATT 3 cut(s) 1903, 2038, 2636
StyI CCWWGG 2 cut(s) 2321, 2658
SwaI ATTTAAAT 1 cut(s) 1698
TaaI ACNGT 8 cut(s) 281, 445, 553, 857, 1108, 2579, 2599, 2745
TaiI ACGT 2 cut(s) 726, 2316
TaqI TCGA 7 cut(s) 151, 586, 787, 805, 1412, 1606, 1719
TatI WGTACW 4 cut(s) 1863, 1998, 2127, 2707
TauI GCSGC 3 cut(s) 657, 1966, 2605
TfiI GAWTC 5 cut(s) 72, 1540, 1608, 1831, 2078
TscAI CASTG 6 cut(s) 1111, 1141, 1570, 1602, 2340, 2412
TseFI GTSAC 3 cut(s) 1264, 1791, 1926
TseI GCWGC 2 cut(s) 1664, 2009
Tsp45I GTSAC 3 cut(s) 1264, 1791, 1926
TspGWI ACGGA 1 cut(s) 1301
TspRI CASTG 6 cut(s) 1111, 1141, 1570, 1602, 2340, 2412
Van91I CCANNNNNTGG 1 cut(s) 970
Vha464I CTTAAG 2 cut(s) 1376, 2123
VpaK11BI GGWCC 3 cut(s) 1858, 1993, 2673
XapI RAATTY 5 cut(s) 113, 625, 1699, 2062, 2506
XbaI TCTAGA 2 cut(s) 715, 1627
XceI RCATGY 5 cut(s) 130, 1321, 1573, 1681, 2735
XcmI CCANNNNNNNNNTGG 1 cut(s) 195
XmiI GTMKAC 3 cut(s) 151, 1412, 1443
XmnI GAANNNNTTC 5 cut(s) 8, 318, 908, 987, 2241
Zsp2I ATGCAT 2 cut(s) 544, 2443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.