Rh2BG381500

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
53913720 .. 53914463
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG381500.1

Sequence Viewer

Length: 744 bp
ATGGAACATATAGTGAATGAACTGCAAAGCCAAAGCATAGTCTCCGTGGTTGGGATGGGAGGATCTGGGAAGACCACTCTTGTTGCAAAGATCTTTAACATTGACATTGTAAAGAGACATTTCAATTGCTATGCATGGATTACAGTTACCCAAACCTATGTGATTGAGGACTTATTTAGAAGCTTGATCAAGCAATTCCATGAAGCAAGGAAGGAGGAGGTTCTAAGAGACATTGATATGATGAGCTTTAGAGAATTGGTAGAGATTCTTGTGAACTTCTTGAACTCAAAAAAGTATCTAGTTGTGCTGGATGATGTATGGGATATAAATCTTTGGGCACAAATAAGGGTATCACTTCAACATAGACAACTTGGAAGTCGAGTTGTACTCACCACTCGAAATGATGATATAGCAAGCTATGCTTTTGGAGTTGCAAGCCATGTTCACCATATTCAACCCCTGGGAAAGAAGAACACTTGGGAGCTTTTTTGCAAGGAGACATTCTCTACTCATCCTATTAAATCTTGTCCACTTGAACTTGAACCATTTGCTCGGGAACTTGTGGGGAAGTGTAATGGCTTTCCTCTAGCAATTGTAGCATTAGGTGGTCTCATGTCATCCAAAAAGTCACGTTCAGAGTGGAGCAATGTTTGCAACAGCTTAAATTGGCATCTTAGAAACGTCCCTTTACTGGGCTCTATGCAGAGCATTTTATTGCTCAATTTCAATGACTTGTCGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

247

Amino Acids

28.25

Weight (kDa)

8.26

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 4 - 169 3e-44 NB-ARC domain
AAA_16 PF13191 11 - 106 3.3e-06 AAA ATPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 70
AfaI GTAC 2 cut(s) 387, 740
AfiI CCNNNNNNNGG 3 cut(s) 51, 691, 692
AgsI TTSAA 7 cut(s) 124, 283, 359, 455, 536, 542, 727
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 5 cut(s) 183, 246, 417, 484, 660
AluI AGCT 5 cut(s) 183, 246, 417, 484, 660
Alw26I GTCTC 5 cut(s) 46, 109, 222, 491, 614
AlwI GGATC 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 552
AsuHPI GGTGA 2 cut(s) 382, 437
AvaI CYCGRG 1 cut(s) 552
BaeGI GKGCMC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 77
BccI CCATC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 461
BclI TGATCA 1 cut(s) 186
BcoDI GTCTC 5 cut(s) 46, 109, 222, 491, 614
BfaI CTAG 2 cut(s) 299, 587
BglII AGATCT 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 552
BmrFI CCNGG 1 cut(s) 461
BmrI ACTGGG 1 cut(s) 701
BmsI GCATC 1 cut(s) 679
BmuI ACTGGG 1 cut(s) 701
BpiI GAAGAC 1 cut(s) 77
BplI GAGNNNNNCTC 4 cut(s) 372, 404, 488, 520
BsaBI GATNNNNATC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 614
BsaJI CCNNGG 3 cut(s) 45, 459, 460
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 691, 692
Bse1I ACTGG 1 cut(s) 696
Bse3DI GCAATG 1 cut(s) 652
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 3 cut(s) 45, 459, 460
BseGI GGATG 4 cut(s) 60, 316, 511, 617
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 3 cut(s) 51, 691, 692
BseMI GCAATG 1 cut(s) 652
BseNI ACTGG 1 cut(s) 696
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 340
BsiHKCI CYCGRG 1 cut(s) 552
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 3 cut(s) 51, 691, 692
BsmAI GTCTC 5 cut(s) 46, 109, 222, 491, 614
BsmFI GGGAC 1 cut(s) 668
Bso31I GGTCTC 1 cut(s) 614
BsoBI CYCGRG 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 340, 698
Bsp143I GATC 3 cut(s) 62, 90, 186
BspPI GGATC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 652
BsrI ACTGG 1 cut(s) 696
BssECI CCNNGG 3 cut(s) 45, 459, 460
BssMI GATC 3 cut(s) 62, 90, 186
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 1 cut(s) 145
BstAPI GCANNNNNTGC 2 cut(s) 419, 651
BstC8I GCNNGC 2 cut(s) 415, 436
BstDEI CTNAG 2 cut(s) 224, 674
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 4 cut(s) 60, 316, 511, 617
BstKTI GATC 3 cut(s) 65, 93, 189
BstMAI GTCTC 5 cut(s) 46, 109, 222, 491, 614
BstMBI GATC 3 cut(s) 62, 90, 186
BstMWI GCNNNNNNNGC 3 cut(s) 419, 596, 651
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstSLI GKGCMC 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 62, 90
BstYI RGATCY 2 cut(s) 62, 90
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 4 cut(s) 60, 316, 511, 617
Cac8I GCNNGC 2 cut(s) 415, 436
Csp6I GTAC 2 cut(s) 386, 739
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 4 cut(s) 135, 200, 440, 613
CviJI RGCY 9 cut(s) 30, 183, 246, 417, 438, 484, 579, 660, 696
CviKI_1 RGCY 9 cut(s) 30, 183, 246, 417, 438, 484, 579, 660, 696
CviQI GTAC 2 cut(s) 386, 739
DdeI CTNAG 2 cut(s) 224, 674
DpnI GATC 3 cut(s) 64, 92, 188
DpnII GATC 3 cut(s) 62, 90, 186
Eco24I GRGCYC 1 cut(s) 698
Eco31I GGTCTC 1 cut(s) 614
Eco88I CYCGRG 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 698
FaeI CATG 4 cut(s) 138, 203, 443, 616
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FaqI GGGAC 1 cut(s) 668
FatI CATG 4 cut(s) 134, 199, 439, 612
FbaI TGATCA 1 cut(s) 186
FokI GGATG 4 cut(s) 67, 323, 498, 604
FriOI GRGCYC 1 cut(s) 698
FspBI CTAG 2 cut(s) 299, 587
Hin1II CATG 4 cut(s) 138, 203, 443, 616
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 1 cut(s) 265
HphI GGTGA 2 cut(s) 382, 437
Hpy166II GTNNAC 3 cut(s) 274, 445, 530
Hpy188I TCNGA 1 cut(s) 637
Hpy188III TCNNGA 2 cut(s) 280, 554
Hpy8I GTNNAC 3 cut(s) 274, 445, 530
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 2 cut(s) 631, 681
HpyCH4V TGCA 7 cut(s) 25, 86, 134, 434, 492, 654, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 419, 596, 651
HpyF3I CTNAG 2 cut(s) 224, 674
HpySE526I ACGT 2 cut(s) 631, 681
Hsp92II CATG 4 cut(s) 138, 203, 443, 616
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 3 cut(s) 62, 90, 186
LmnI GCTCC 2 cut(s) 481, 642
LpnPI CCDG 5 cut(s) 51, 293, 446, 473, 677
LweI GCATC 1 cut(s) 679
MaeI CTAG 2 cut(s) 299, 587
MaeII ACGT 2 cut(s) 631, 681
MaeIII GTNAC 2 cut(s) 145, 627
MalI GATC 3 cut(s) 64, 92, 188
MboI GATC 3 cut(s) 62, 90, 186
MboII GAAGA 2 cut(s) 82, 481
MfeI CAATTG 2 cut(s) 124, 591
MflI RGATCY 2 cut(s) 62, 90
MhlI GDGCHC 2 cut(s) 340, 698
MluCI AATT 6 cut(s) 124, 194, 254, 591, 664, 721
MnlI CCTC 5 cut(s) 53, 160, 208, 211, 594
Mph1103I ATGCAT 1 cut(s) 136
MseI TTAA 3 cut(s) 96, 519, 662
MslI CAYNNNNRTG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 461
MunI CAATTG 2 cut(s) 124, 591
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 3 cut(s) 419, 596, 651
NdeII GATC 3 cut(s) 62, 90, 186
NlaIII CATG 4 cut(s) 138, 203, 443, 616
NmuCI GTSAC 1 cut(s) 627
NsiI ATGCAT 1 cut(s) 136
PasI CCCWGGG 1 cut(s) 460
PfeI GAWTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PsuI RGATCY 2 cut(s) 62, 90
RsaI GTAC 2 cut(s) 387, 740
RsaNI GTAC 2 cut(s) 386, 739
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 3 cut(s) 96, 519, 662
Sau3AI GATC 3 cut(s) 62, 90, 186
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 2 cut(s) 340, 698
SfaNI GCATC 1 cut(s) 679
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 6 cut(s) 124, 194, 254, 591, 664, 721
SspMI CTAG 2 cut(s) 299, 587
StyD4I CCNGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 2 cut(s) 634, 684
TaqI TCGA 2 cut(s) 379, 397
TasI AATT 6 cut(s) 124, 194, 254, 591, 664, 721
TatI WGTACW 1 cut(s) 385
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 3 cut(s) 96, 519, 662
Tru9I TTAA 3 cut(s) 96, 519, 662
TseFI GTSAC 1 cut(s) 627
Tsp45I GTSAC 1 cut(s) 627
TspDTI ATGAA 2 cut(s) 33, 216
TspGWI ACGGA 1 cut(s) 34
XspI CTAG 2 cut(s) 299, 587
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.