pycom06g14050

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
18921176 .. 18930397
9222 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g14050.1

Sequence Viewer

Length: 3120 bp
ATGGAGTCAGCTGCATCACTATTGATTGGGAAAATTGCGGCCATTCTGGAGAATGAAGCATCTTCCGTAGCGGCAGTTCGAGATGAAGTTGATGAGCTTAAGCTGGAGCTCATAAGCATGAAATCTTTCTTAATAGATGCTAAAGGCAAGGAACTACGAACAGAAGGAGAGAAAACGTGGGTTACAAGCGTCAGAGATTTGACCTGCGATGCGGAAAATGTCATTGATGAGTTCCTGTATCACATATATGACCAGCAAAGTGCGGCTCCATTTGCAAAATGGCTCCACAAAACCATTTACTTTCCAAAGAATCTTTGGTTTAGGCATGGAATAGCCAAAAAATTACAGAAAATCACAAAAAAGATCAAAGCCATTCCAGAGAGGAATGAGAGATATGGTGTCTCTACAATAGAAGGAACAAGTTCGGATAGTGTTCCCAGATGGGTGAAGAACAAAGCCGAGTCTTCTCTTTATATTATGGAAGACGAACTAATCGGGATTGAAGACAAGAAGCAAACGTTAATGGGATTGTTGATGAATGGAGAGGAAAATGAAATGGTTGTGTCTGTGGTCGGGATGGGAGGATCAGGCAAGACAACTCTTGTTGCCAATACCTTCAACAACGTAAATGTAAAGCGACATTTTTACTGTTATGCATGGATCACTGTTTCTCAAACTTACATGATCGAAGACTTATTCAAAAATCTGATCAAGCAATTCCACGAAGGAAGAAAGGAAGAGGTGCCTGTACATTTGAATTCCATGAGTTATAAAGAATTGTTAGAGATGTTGTCGACATACTTGAAGTCTAAAAGGTACCTAGTTGTATTGGATGACGTGTGGGATATTAAACTTTGGCAAGAAATAAGGATACCACTTCTTAATAGACATCATGGAAGTCGAATCATGCTTACAACTCGAAAGAAAGACATAGCTTCCTATTCTTTTGAAGTTGAAAGTCGTGCTGAGTTCGTAGCCTGTTTTGAAGGAATGAAACAAGCTGTGTGGTTGAAGAATTTTTTGACTGTTTTAAAAATTGTGAATTCGGTTCAGAAACCAGTAAGGATGTTTTGTGATAACAACTCTGCTGTGTTCTTTGCGAAAAATAATAGAAGAACTTCTGCCTCAAGGTTAATGGATGTAAAATTCCTTAAAGTGAGAGAGGAAGTGAAGAAGGGCATGATTGAAGTTCAGCACATCAGCACGGTTTTAATGGTTGCAGATCCTTTGACTAAAGCACTACCTATTGGAGAATTTCAGAAACATGTATCTCGGATGGGAGTGTTGGAAACTTTAGATCAGTGGGATCGTCCTTTTGAAATTGAACCCTTGGAAAACGATGAAGCTTGGGAGCTCTTTAGCAGGAAAGCATTCTCAACTTACGACAATAAATCTTGTCCACCAGAGCTTGAATCCTTAGCGTGGAAACTTGTGGAAAAGTGTGAAGGTCTACCTCTGGCTTTGGTAACTTTAGGTGGTCTAATGTCTTCCAAGAGGTCATCATCGGAATGGAGAAGCGTATATAACAGCTTAAATTGGCACTTGACTAACCATCATATGCTAGAACCAATGAGCAGCATCTTGTTGCTTAGTTTCAACAATTTGCCGAACCGGTTGAAGCCCTGTTTCCTATATTGTGCCCTTTTCCCAGAAGATTATCTCATCAGAAGAAAAAGGTTGATTAAGTTGTGGATAGCTGAAGGGCTTGTTGAACCAATTGATGGGGTCACACCAGAAGAAGTTGCAGAAGGCTATCTTGTGGAACTTGTTGTTCGTAGCATGCTACAAGTTGAAATGAATGAAGCTGGAGGACTAAGAGCATGTAAAATGCATGATCTTGTGCGTGAGCTTGCTTTGTCGACAGCAAAAAAGGAAAAGTTTGGTGCTGCATATGTTGGCAGAGAAATAGTAGATAAAGCTAAAATCCGCCGATTGTCAATTCAAACAACTGAAAGAGAAATGAATTCTTGCACAGGTATGTCAGAGCTTCGCTCCTTTCTTGTCTTTGGCGCGTTAAAGAAATTGCCTTCTGGATTCAAGTTGTTGAGAGTTCTAGATTTGGAGGATGCTCCAATTGATACATTTCCAGATGAACTAGTGTACTTGTTCAACTTAAGATATTTAAGTTTGAGGGGAACTTTAATTGAGGAGCTTCCAGAATGCATCGGACGGCTTCGCAACCTTCAAACCTTGAACATCCGTGACAGTAAGATAAAGGCACTTCCGAAAGCAATCTCCAAGTTAGTAAACCTACGCCATCTAAACATGGATCATTGCACTAATGATCTTTATGGTTTTGTGTATCTCAAAGGGACAAAAGCAGCATCCGATCTAAGTAAATTACAGAAACTGCAAGTTTTGCATTCTGTTGAATCAGAAGGAAAGATTGTTAAAGGCATCAGGAATATGACCCAACTTACAACCCTCGGTATTACAAATGTGAAAGCAAGTGACGAGATGGAACTATGTGACTCCCTTCAAAGGTTAAAGCTCCTTCACCATTTGTATTTAATGGCAAGTGATGAAGAGGAGTTTCTTCGAGTTAATGCACTACCTTCGCCTCCTCCAGACCTTCAAAATGTTAATTTGACCGGAAAACTAGAAAAGGTACCTCCTTGGTTTGGTTCACTCCATAACGTGACACGTATGTATCTAAATTGGTCTAGACTTGAAGAAGATGTGCTACCTCACATTCAAGCATTGCCGAATCTTGAATGGCTTGAGCTATTTAATGCATATGTTGGAGAAAAATTGTGTTTCTCCAGAGGCTTCATAAAGCTTAAGCATTTGGTGTTTGGCAGCTTCCCGGTATTGAATAGTATAGCTATAGAGAAAGGGGCGATGCCAAATCTCCAGGTCTTACACATTGGGAACTGCCCGGAGTTAAAGGCATTGCCGCAGGGCATTGAGTTCCTTGCTAACGTAGAACGCTTGAATCTGGATTTTGTTCCAACGCAACTTATAGATTCCGTAAAAGGAGGGATCGATCATCCAAAGGTACAACATATTCCTGAAATCCACCTGTTTTATGAGAGAGAAAATATGTGGTGTCATGAAAGCTTTTCTGGCATTCACTCTCGTAAAAGGTATGCACACTTTTATCCTTATATAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1040

Amino Acids

119.17

Weight (kDa)

8.12

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 89 1.4e-19 Rx N-terminal domain
NB-ARC PF00931 168 - 318 5.3e-39 NB-ARC domain
WHD_DRP PF23559 548 - 618 6.3e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 663 - 963 1e-45 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
Acc36I ACCTGC 1 cut(s) 212
Acc65I GGTACC 2 cut(s) 816, 2608
AccB1I GGYRCC 3 cut(s) 742, 816, 2608
AccB7I CCANNNNNTGG 1 cut(s) 1721
AccI GTMKAC 3 cut(s) 794, 1450, 1859
AccII CGCG 1 cut(s) 2012
AciI CCGC 6 cut(s) 38, 71, 212, 263, 1927, 2897
AclI AACGTT 1 cut(s) 518
AclWI GGATC 6 cut(s) 592, 668, 1217, 1314, 2277, 2990
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 7 cut(s) 757, 1015, 1042, 1145, 1253, 1963, 3114
AcuI CTGAAG 1 cut(s) 1719
AfaI GTAC 5 cut(s) 750, 818, 2102, 2610, 3000
AfiI CCNNNNNNNGG 4 cut(s) 1422, 1721, 2481, 2621
AflII CTTAAG 3 cut(s) 98, 2113, 2780
AflIII ACRYGT 3 cut(s) 837, 1264, 2642
AgeI ACCGGT 1 cut(s) 1611
AhlI ACTAGT 1 cut(s) 2095
AjiI CACGTC 1 cut(s) 838
AjnI CCWGG 1 cut(s) 2853
Alw21I GWGCWC 2 cut(s) 111, 1356
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 6 cut(s) 592, 668, 1217, 1314, 2277, 2990
AlwNI CAGNNNCTG 1 cut(s) 2350
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 5 cut(s) 11, 1575, 1886, 2321, 2799
ApoI RAATTY 7 cut(s) 757, 1015, 1042, 1145, 1253, 1963, 3114
AsiGI ACCGGT 1 cut(s) 1611
Asp700I GAANNNNTTC 4 cut(s) 125, 421, 1117, 1370
Asp718I GGTACC 2 cut(s) 816, 2608
AspLEI GCGC 1 cut(s) 2012
AsuC2I CCSGG 2 cut(s) 2807, 2879
AsuHPI GGTGA 2 cut(s) 457, 2489
BaeGI GKGCMC 1 cut(s) 1642
BaeI ACNNNNGTAYC 2 cut(s) 2633, 2666
BanI GGYRCC 3 cut(s) 742, 816, 2608
BanII GRGCYC 2 cut(s) 111, 1356
BarI GAAGNNNNNNTAC 2 cut(s) 2667, 2699
BbsI GAAGAC 5 cut(s) 456, 489, 510, 696, 1479
Bbv12I GWGCWC 2 cut(s) 111, 1356
BbvI GCAGC 4 cut(s) 1587, 1873, 2333, 2811
BccI CCATC 7 cut(s) 435, 571, 1270, 1560, 1715, 2265, 2452
BceAI ACGGC 1 cut(s) 2186
BcgI CGANNNNNNTGC 2 cut(s) 2538, 2572
BciT130I CCWGG 1 cut(s) 2855
BciVI GTATCC 1 cut(s) 864
BclI TGATCA 1 cut(s) 708
BcnI CCSGG 2 cut(s) 2807, 2879
BcoDI GTCTC 1 cut(s) 406
BcuI ACTAGT 1 cut(s) 2095
BfaI CTAG 6 cut(s) 821, 1562, 2054, 2096, 2600, 2664
BfmI CTRYAG 1 cut(s) 2826
BfrI CTTAAG 3 cut(s) 98, 2113, 2780
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 1 cut(s) 864
BisI GCNGC 9 cut(s) 12, 39, 72, 264, 1576, 1887, 2322, 2800, 2897
BlsI GCNGC 9 cut(s) 13, 40, 73, 265, 1577, 1888, 2323, 2801, 2898
Bme1390I CCNGG 3 cut(s) 2807, 2855, 2879
BmgBI CACGTC 1 cut(s) 838
BmiI GGNNCC 5 cut(s) 267, 284, 744, 818, 2610
BmrFI CCNGG 3 cut(s) 2807, 2855, 2879
BpiI GAAGAC 5 cut(s) 456, 489, 510, 696, 1479
BplI GAGNNNNNCTC 2 cut(s) 1976, 2008
BpmI CTGGAG 6 cut(s) 68, 125, 1827, 2550, 2746, 2837
Bpu10I CCTNAGC 1 cut(s) 1417
BpuEI CTTGAG 2 cut(s) 1111, 2741
BpuMI CCSGG 2 cut(s) 2807, 2879
Bsa29I ATCGAT 1 cut(s) 2985
BsaAI YACGTR 1 cut(s) 2645
BsaJI CCNNGG 3 cut(s) 1329, 2425, 2615
BsaWI WCCGGW 2 cut(s) 1611, 2591
Bsc4I CCNNNNNNNGG 4 cut(s) 1422, 1721, 2481, 2621
Bse118I RCCGGY 1 cut(s) 1611
Bse1I ACTGG 1 cut(s) 1058
Bse3DI GCAATG 3 cut(s) 2272, 2699, 2891
BseBI CCWGG 1 cut(s) 2855
BseCI ATCGAT 1 cut(s) 2985
BseDI CCNNGG 3 cut(s) 1329, 2425, 2615
BseGI GGATG 9 cut(s) 582, 838, 1071, 1144, 1281, 2071, 2196, 2324, 2989
BseLI CCNNNNNNNGG 4 cut(s) 1422, 1721, 2481, 2621
BseMI GCAATG 3 cut(s) 2272, 2699, 2891
BseMII CTCAG 1 cut(s) 957
BseNI ACTGG 1 cut(s) 1058
BseRI GAGGAG 3 cut(s) 2162, 2543, 2553
BseSI GKGCMC 1 cut(s) 1642
BseXI GCAGC 4 cut(s) 1587, 1873, 2333, 2811
Bsh1236I CGCG 1 cut(s) 2012
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 3 cut(s) 742, 816, 2608
BshTI ACCGGT 1 cut(s) 1611
BshVI ATCGAT 1 cut(s) 2985
BsiHKAI GWGCWC 2 cut(s) 111, 1356
BsiSI CCGG 4 cut(s) 1612, 2592, 2807, 2879
BslFI GGGAC 1 cut(s) 2326
BslI CCNNNNNNNGG 4 cut(s) 1422, 1721, 2481, 2621
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 1 cut(s) 2326
BsmI GAATGC 4 cut(s) 1370, 2165, 2362, 3069
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 3 cut(s) 111, 1356, 1642
Bsp1407I TGTACA 1 cut(s) 748
BspACI CCGC 6 cut(s) 38, 71, 212, 263, 1927, 2897
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 958
BspDI ATCGAT 1 cut(s) 2985
BspFNI CGCG 1 cut(s) 2012
BspHI TCATGA 1 cut(s) 3052
BspLI GGNNCC 5 cut(s) 267, 284, 744, 818, 2610
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 6 cut(s) 592, 668, 1217, 1314, 2277, 2990
BspT107I GGYRCC 3 cut(s) 742, 816, 2608
BspTI CTTAAG 3 cut(s) 98, 2113, 2780
BsrDI GCAATG 3 cut(s) 2272, 2699, 2891
BsrFI RCCGGY 1 cut(s) 1611
BsrGI TGTACA 1 cut(s) 748
BsrI ACTGG 1 cut(s) 1058
BssAI RCCGGY 1 cut(s) 1611
BssECI CCNNGG 3 cut(s) 1329, 2425, 2615
BssT1I CCWWGG 2 cut(s) 1329, 2615
Bst2UI CCWGG 1 cut(s) 2855
Bst4CI ACNGT 5 cut(s) 650, 667, 1027, 1207, 2207
Bst6I CTCTTC 2 cut(s) 732, 2520
BstAFI CTTAAG 3 cut(s) 98, 2113, 2780
BstAPI GCANNNNNTGC 1 cut(s) 2359
BstAUI TGTACA 1 cut(s) 748
BstBAI YACGTR 1 cut(s) 2645
BstC8I GCNNGC 2 cut(s) 1781, 1851
BstDEI CTNAG 5 cut(s) 966, 1417, 1589, 1814, 2333
BstF5I GGATG 9 cut(s) 582, 838, 1071, 1144, 1281, 2071, 2196, 2324, 2989
BstFNI CGCG 1 cut(s) 2012
BstHHI GCGC 1 cut(s) 2012
BstMAI GTCTC 1 cut(s) 406
BstMWI GCNNNNNNNGC 3 cut(s) 272, 2359, 3066
BstNI CCWGG 1 cut(s) 2855
BstNSI RCATGY 3 cut(s) 1268, 1783, 1824
BstSCI CCNGG 3 cut(s) 2805, 2853, 2877
BstSFI CTRYAG 1 cut(s) 2826
BstSLI GKGCMC 1 cut(s) 1642
BstUI CGCG 1 cut(s) 2012
BstV1I GCAGC 4 cut(s) 1587, 1873, 2333, 2811
BstV2I GAAGAC 5 cut(s) 456, 489, 510, 696, 1479
BstX2I RGATCY 1 cut(s) 1222
BstYI RGATCY 1 cut(s) 1222
Bsu15I ATCGAT 1 cut(s) 2985
BsuI GTATCC 1 cut(s) 864
BsuRI GGCC 1 cut(s) 41
BsuTUI ATCGAT 1 cut(s) 2985
BtgZI GCGATG 2 cut(s) 222, 2855
BtrI CACGTC 1 cut(s) 838
BtsCI GGATG 9 cut(s) 582, 838, 1071, 1144, 1281, 2071, 2196, 2324, 2989
BtsIMutI CAGTG 2 cut(s) 663, 1307
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 1781, 1851
CaiI CAGNNNCTG 1 cut(s) 2350
CciI TCATGA 1 cut(s) 3052
CfoI GCGC 1 cut(s) 2012
Cfr10I RCCGGY 1 cut(s) 1611
ClaI ATCGAT 1 cut(s) 2985
CseI GACGC 1 cut(s) 178
Csp6I GTAC 5 cut(s) 749, 817, 2101, 2609, 2999
CspAI ACCGGT 1 cut(s) 1611
CspCI CAANNNNNGTGG 2 cut(s) 986, 1021
CviQI GTAC 5 cut(s) 749, 817, 2101, 2609, 2999
DdeI CTNAG 5 cut(s) 966, 1417, 1589, 1814, 2333
DraI TTTAAA 1 cut(s) 1032
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 732, 2520
EarI CTCTTC 2 cut(s) 732, 2520
EciI GGCGGA 1 cut(s) 1916
Ecl136II GAGCTC 2 cut(s) 109, 1354
Eco130I CCWWGG 2 cut(s) 1329, 2615
Eco24I GRGCYC 2 cut(s) 111, 1356
Eco53kI GAGCTC 2 cut(s) 109, 1354
Eco57I CTGAAG 1 cut(s) 1719
EcoICRI GAGCTC 2 cut(s) 109, 1354
EcoRI GAATTC 3 cut(s) 757, 1042, 1963
EcoRII CCWGG 1 cut(s) 2853
EcoT14I CCWWGG 2 cut(s) 1329, 2615
EcoT22I ATGCAT 4 cut(s) 658, 1833, 2165, 2737
EcoT38I GRGCYC 2 cut(s) 111, 1356
ErhI CCWWGG 2 cut(s) 1329, 2615
FalI AAGNNNNNCTT 2 cut(s) 1740, 1772
FaqI GGGAC 1 cut(s) 2326
FauNDI CATATG 3 cut(s) 1557, 1891, 2737
FbaI TGATCA 1 cut(s) 708
FblI GTMKAC 3 cut(s) 794, 1450, 1859
Fnu4HI GCNGC 9 cut(s) 12, 39, 72, 264, 1576, 1887, 2322, 2800, 2897
FokI GGATG 9 cut(s) 589, 845, 1078, 1151, 1288, 2078, 2183, 2311, 2976
FriOI GRGCYC 2 cut(s) 111, 1356
Fsp4HI GCNGC 9 cut(s) 12, 39, 72, 264, 1576, 1887, 2322, 2800, 2897
FspBI CTAG 6 cut(s) 821, 1562, 2054, 2096, 2600, 2664
GlaI GCGC 1 cut(s) 2011
GluI GCNGC 9 cut(s) 12, 39, 72, 264, 1576, 1887, 2322, 2800, 2897
GsuI CTGGAG 6 cut(s) 68, 125, 1827, 2550, 2746, 2837
HaeIII GGCC 1 cut(s) 41
HapII CCGG 4 cut(s) 1612, 2592, 2807, 2879
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 2012
Hin6I GCGC 1 cut(s) 2010
HinP1I GCGC 1 cut(s) 2010
HincII GTYRAC 2 cut(s) 795, 1860
HindII GTYRAC 2 cut(s) 795, 1860
HindIII AAGCTT 3 cut(s) 1344, 2777, 3058
HpaII CCGG 4 cut(s) 1612, 2592, 2807, 2879
HphI GGTGA 2 cut(s) 457, 2489
Hpy166II GTNNAC 7 cut(s) 795, 1400, 1451, 1860, 2101, 2248, 2627
Hpy8I GTNNAC 7 cut(s) 795, 1400, 1451, 1860, 2101, 2248, 2627
HpyCH4III ACNGT 5 cut(s) 650, 667, 1027, 1207, 2207
HpyCH4IV ACGT 7 cut(s) 176, 518, 624, 837, 2637, 2644, 2922
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 2359, 3066
HpyF3I CTNAG 5 cut(s) 966, 1417, 1589, 1814, 2333
HpySE526I ACGT 7 cut(s) 176, 518, 624, 837, 2637, 2644, 2922
HspAI GCGC 1 cut(s) 2010
KpnI GGTACC 2 cut(s) 820, 2612
Ksp22I TGATCA 1 cut(s) 708
LmnI GCTCC 8 cut(s) 106, 271, 288, 1351, 1997, 2074, 2149, 2496
Lsp1109I GCAGC 4 cut(s) 1587, 1873, 2333, 2811
MaeI CTAG 6 cut(s) 821, 1562, 2054, 2096, 2600, 2664
MaeII ACGT 7 cut(s) 176, 518, 624, 837, 2637, 2644, 2922
MaeIII GTNAC 7 cut(s) 181, 1465, 1726, 2201, 2450, 2468, 2638
MfeI CAATTG 2 cut(s) 1716, 2073
MflI RGATCY 1 cut(s) 1222
MhlI GDGCHC 3 cut(s) 111, 1356, 1642
MlyI GAGTC 3 cut(s) 14, 470, 2465
MmeI TCCRAC 3 cut(s) 1266, 2722, 2975
Mph1103I ATGCAT 4 cut(s) 658, 1833, 2165, 2737
MroXI GAANNNNTTC 4 cut(s) 125, 421, 1117, 1370
MslI CAYNNNNRTG 4 cut(s) 116, 246, 1507, 1976
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 3 cut(s) 98, 2113, 2780
MspI CCGG 4 cut(s) 1612, 2592, 2807, 2879
MspR9I CCNGG 3 cut(s) 2807, 2855, 2879
MunI CAATTG 2 cut(s) 1716, 2073
Mva1269I GAATGC 4 cut(s) 1370, 2165, 2362, 3069
MvaI CCWGG 1 cut(s) 2855
MvnI CGCG 1 cut(s) 2012
MwoI GCNNNNNNNGC 3 cut(s) 272, 2359, 3066
NciI CCSGG 2 cut(s) 2807, 2879
NdeI CATATG 3 cut(s) 1557, 1891, 2737
NlaIV GGNNCC 5 cut(s) 267, 284, 744, 818, 2610
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 5 cut(s) 1726, 2201, 2450, 2468, 2638
NsiI ATGCAT 4 cut(s) 658, 1833, 2165, 2737
NspI RCATGY 3 cut(s) 1268, 1783, 1824
PaeI GCATGC 1 cut(s) 1783
PagI TCATGA 1 cut(s) 3052
PciI ACATGT 1 cut(s) 1264
PctI GAATGC 4 cut(s) 1370, 2165, 2362, 3069
PdmI GAANNNNTTC 4 cut(s) 125, 421, 1117, 1370
PfeI GAWTC 8 cut(s) 310, 903, 1412, 2034, 2372, 2707, 2935, 2966
PflMI CCANNNNNTGG 1 cut(s) 1721
PinAI ACCGGT 1 cut(s) 1611
PkrI GCNGC 9 cut(s) 13, 40, 73, 265, 1577, 1888, 2323, 2801, 2898
PleI GAGTC 3 cut(s) 13, 469, 2465
PpsI GAGTC 3 cut(s) 13, 469, 2465
Ppu21I YACGTR 1 cut(s) 2645
PscI ACATGT 1 cut(s) 1264
PsiI TTATAA 1 cut(s) 771
Psp124BI GAGCTC 2 cut(s) 111, 1356
Psp1406I AACGTT 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 2853
PspGI CCWGG 1 cut(s) 2853
PspN4I GGNNCC 5 cut(s) 267, 284, 744, 818, 2610
PsrI GAACNNNNNNTAC 2 cut(s) 60, 92
PstNI CAGNNNCTG 1 cut(s) 2350
PsuI RGATCY 1 cut(s) 1222
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 5 cut(s) 750, 818, 2102, 2610, 3000
RsaNI GTAC 5 cut(s) 749, 817, 2101, 2609, 2999
RseI CAYNNNNRTG 4 cut(s) 116, 246, 1507, 1976
SacI GAGCTC 2 cut(s) 111, 1356
SalI GTCGAC 2 cut(s) 793, 1858
SatI GCNGC 9 cut(s) 12, 39, 72, 264, 1576, 1887, 2322, 2800, 2897
SchI GAGTC 3 cut(s) 14, 470, 2465
ScrFI CCNGG 3 cut(s) 2807, 2855, 2879
SduI GDGCHC 3 cut(s) 111, 1356, 1642
SfcI CTRYAG 1 cut(s) 2826
SmiMI CAYNNNNRTG 4 cut(s) 116, 246, 1507, 1976
SmlI CTYRAG 5 cut(s) 98, 1126, 2113, 2720, 2780
SmoI CTYRAG 5 cut(s) 98, 1126, 2113, 2720, 2780
SpeI ACTAGT 1 cut(s) 2095
SphI GCATGC 1 cut(s) 1783
SsiI CCGC 6 cut(s) 38, 71, 212, 263, 1927, 2897
SspMI CTAG 6 cut(s) 821, 1562, 2054, 2096, 2600, 2664
SstI GAGCTC 2 cut(s) 111, 1356
StyD4I CCNGG 3 cut(s) 2805, 2853, 2877
StyI CCWWGG 2 cut(s) 1329, 2615
TaaI ACNGT 5 cut(s) 650, 667, 1027, 1207, 2207
TaiI ACGT 7 cut(s) 179, 521, 627, 840, 2640, 2647, 2925
TaqI TCGA 8 cut(s) 79, 687, 794, 901, 919, 1859, 2539, 2985
TatI WGTACW 2 cut(s) 748, 2100
TauI GCSGC 4 cut(s) 41, 74, 266, 2899
TfiI GAWTC 8 cut(s) 310, 903, 1412, 2034, 2372, 2707, 2935, 2966
TscAI CASTG 2 cut(s) 670, 1307
TseFI GTSAC 5 cut(s) 1726, 2201, 2450, 2468, 2638
TseI GCWGC 5 cut(s) 11, 1575, 1886, 2321, 2799
Tsp45I GTSAC 5 cut(s) 1726, 2201, 2450, 2468, 2638
TspGWI ACGGA 3 cut(s) 55, 2189, 2959
TspRI CASTG 2 cut(s) 670, 1307
Van91I CCANNNNNTGG 1 cut(s) 1721
Vha464I CTTAAG 3 cut(s) 98, 2113, 2780
XapI RAATTY 7 cut(s) 757, 1015, 1042, 1145, 1253, 1963, 3114
XbaI TCTAGA 2 cut(s) 2053, 2663
XceI RCATGY 3 cut(s) 1268, 1783, 1824
XcmI CCANNNNNNNNNTGG 2 cut(s) 276, 312
XmiI GTMKAC 3 cut(s) 794, 1450, 1859
XmnI GAANNNNTTC 4 cut(s) 125, 421, 1117, 1370
XspI CTAG 6 cut(s) 821, 1562, 2054, 2096, 2600, 2664
Zsp2I ATGCAT 4 cut(s) 658, 1833, 2165, 2737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.