Rorug06G0115100

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
15698137 .. 15699809
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0115100.1

Sequence Viewer

Length: 354 bp
ATGGCTGCTCAGATGAAGGCGTTTTTCGACTCCACGGGGGAGCTTTGGAGGGAGCAGAAGCTTGCAGGGGTGCCTGCTGGGTTCTTTGTGAGTACTGGCACACAGGGTGGTGGACAGGAGACTAATGCTTGGACAGCCATTACTCAGTTAGCACACCATGGAATGATATATGTTCCAATTGGCTACACCTTTGGTGCTGGAATGTTCCAAATGGACTCCCTTAGAGGAGGGTCTCCATATGGTTCTGGGGTTCTTTCTGGAGATGGCACAAGGGCACCAACTGAGACAGAGCTCGCTCTTGCAGAGCATCACGGAAAGTACATGGCTACTATTGTCAAGAAGCTTGTACATTGA

Protein Analysis

117

Amino Acids

12.44

Weight (kDa)

6.49

Isoelectric Point (pI)

27.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 70, 274
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 3 cut(s) 94, 320, 348
AluBI AGCT 4 cut(s) 43, 61, 292, 343
AluI AGCT 4 cut(s) 43, 61, 292, 343
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 3 cut(s) 113, 237, 278
ApeKI GCWGC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 277
BanI GGYRCC 2 cut(s) 70, 274
BanII GRGCYC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 294
BccI CCATC 1 cut(s) 257
BcoDI GTCTC 3 cut(s) 113, 237, 278
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 72, 276
BmsI GCATC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 33, 157
Bse1I ACTGG 1 cut(s) 100
BseDI CCNNGG 2 cut(s) 33, 157
BseMII CTCAG 3 cut(s) 23, 158, 273
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 77
BshNI GGYRCC 2 cut(s) 70, 274
BsiHKAI GWGCWC 1 cut(s) 294
BsmAI GTCTC 3 cut(s) 113, 237, 278
Bso31I GGTCTC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 277, 294
Bsp1407I TGTACA 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 157
BspCNI CTCAG 3 cut(s) 22, 157, 274
BspLI GGNNCC 2 cut(s) 72, 276
BspT107I GGYRCC 2 cut(s) 70, 274
BspTNI GGTCTC 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 346
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 33, 157
BssT1I CCWWGG 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 346
BstC8I GCNNGC 3 cut(s) 63, 75, 294
BstDEI CTNAG 4 cut(s) 9, 144, 221, 282
BstDSI CCRYGG 2 cut(s) 33, 157
BstMAI GTCTC 3 cut(s) 113, 237, 278
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 277
BtgI CCRYGG 2 cut(s) 33, 157
Cac8I GCNNGC 3 cut(s) 63, 75, 294
Csp6I GTAC 3 cut(s) 93, 319, 347
CviAII CATG 2 cut(s) 158, 322
CviJI RGCY 8 cut(s) 5, 43, 61, 137, 183, 292, 326, 343
CviKI_1 RGCY 8 cut(s) 5, 43, 61, 137, 183, 292, 326, 343
CviQI GTAC 3 cut(s) 93, 319, 347
DdeI CTNAG 4 cut(s) 9, 144, 221, 282
DraIII CACNNNGTG 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 161, 325
FaiI YATR 6 cut(s) 159, 169, 171, 238, 240, 323
FatI CATG 2 cut(s) 157, 321
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 279
Hin1II CATG 2 cut(s) 161, 325
HindIII AAGCTT 2 cut(s) 59, 341
HinfI GANTC 2 cut(s) 29, 215
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 258, 337
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 65, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 4 cut(s) 9, 144, 221, 282
Hsp92II CATG 2 cut(s) 161, 325
LmnI GCTCC 2 cut(s) 40, 52
LpnPI CCDG 9 cut(s) 51, 63, 81, 87, 89, 101, 183, 231, 243
LweI GCATC 1 cut(s) 316
MfeI CAATTG 1 cut(s) 177
MhlI GDGCHC 2 cut(s) 277, 294
MluCI AATT 1 cut(s) 177
MlyI GAGTC 2 cut(s) 23, 209
MnlI CCTC 3 cut(s) 42, 218, 221
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 134
NcoI CCATGG 1 cut(s) 157
NdeI CATATG 1 cut(s) 238
NlaIII CATG 2 cut(s) 161, 325
NlaIV GGNNCC 2 cut(s) 72, 276
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 23, 209
PpsI GAGTC 2 cut(s) 23, 209
Psp124BI GAGCTC 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 72, 276
RsaI GTAC 3 cut(s) 94, 320, 348
RsaNI GTAC 3 cut(s) 93, 319, 347
SacI GAGCTC 1 cut(s) 294
SatI GCNGC 1 cut(s) 6
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 2 cut(s) 23, 209
SduI GDGCHC 2 cut(s) 277, 294
SetI ASST 5 cut(s) 45, 63, 191, 294, 345
SfaNI GCATC 1 cut(s) 316
Sse9I AATT 1 cut(s) 177
SstI GAGCTC 1 cut(s) 294
StyI CCWWGG 1 cut(s) 157
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 177
TatI WGTACW 3 cut(s) 92, 318, 346
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 327
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.