Prupe.8G008700_v2.0.a1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000110
Physical Location & Seq
Reverse (-)
647145 .. 650766
3622 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G008700.1

Sequence Viewer

Length: 2754 bp
ATGGCCTTGCCAACAGACCTCTTGATTGGCAAAATTGTGACCATTCTTGAGAACGAAGCATCCTCCATAGCCGGTGTTTGTGATGAAATTGATGACATCAAGCAGGAGCTTGTAAGCATGACGGCCTTCCTCAATGATACTGAGGGCAAGAATGTACGCAGCGAAGGTGGGAGGACGTGGGTTGCAAGCGTCAGAGGCATGGCCTATGATGTTGAAGACATCATTGACGAGTTCATGTATCACATGTATAAGCGAGGATGTCATGATGGTCGATTTGCAAGGTGGTTCCACCAAACTATTCGCATTCCACAGAATGTTTGGTTCAGACGTCAAATGTCAAAGAAGTTGCGGAAAATCTCAATAATGATTAAAGCCATTCCGGATAGGAATCAGAGATATGGTGTCGGTGGATTAGAAGGAACAAGTAGTGCTTGTGATGATGTTAGCAAATTGATGCGGAACCAAGCGGAATCTTCTCTTTTTATTAAGGAAGATGAGCTCGTGGGGATTGAAAGAAAGAAGCAACTATTGATCAATTGGTTGATGAATGGAGAGCAACAGCAAACGCTTCTCTCTGTGGTGGGGATGGGCGGATCAGGGAAGACGACTTTAGTTGCAAAGACCTTCAACGACGAAAGGGTCAAGAAACAATTCCACTGTTGTGCTTGGGTAACTATTTCACAAACTTATGTGATTGACGACTTGTTTAGAAGCTTGATTAAGGAATTCCACGAAGCAAACAAGGAAAAGGTCCCTGCAGACATGAATTCCATGACATATAGAGAATTGCTACAGGTGCTGGTCAATTACTTGGAGTCTAAAAGGTACATGGTTGTATTGGATGATGTTTGGGATATCAAACTTTGGAAAGAAATTAGGATTGCACTCCCAAATACACAGCTTGGAAGTCGAATCATGCTTACTACTCGAAAAGAAGACGTAGCATCCTCTTCTTTTGGAGTACAAAGTCATATTCACCACATTCAACTCCTCAAAAAGAATGAGGCTTGGGAGCTATTCAGCAGCAAAGCATTCTCAGCTTACCAGAATAACTGTTGTCCACCAGAACTTCAATCATTGGCTGAGGAAGTTGTAGAAAAGTGTGAAGGCCTACCTCTGGCAATCGTGGCTTTAGGTGGTCTGATGTCCTCCAAGAAGCCATTCGAGTGGAAGCAAGTCTACAACAGCTTAAACTTGCATTTAACTATCCCGTTGTTAGAGCGAGTGCAGAACATCTTATTTCTTAGTTTTGATGATTTACCATACCCATTGAAGCACTGTTTTCTATACTGTTCCCTTTTCCCAGAAGACTATTTGATTCGAAGAAAGAGGCTCATTAGGTTGTGGATAGCTGAAGGGTTTATTCAAGATGGAAAAGGCACCACACCAGAAGAAGTTGCTGAGAGCTATCTTATGCAGCTCATTTTCCGTAGCATGCTACATGTTGTTAAGAGGAATGAAAGTGGAAGGCCAAAAGCATGTAAGATGCACGACCTTATGCGGGAGCTTGCTCTGTCTAAATCAGAAAAAGAAAAGTTCGGTGCTGTATATGATGGAAAAGAAGCTATGGACGAAGTTCAAGTGCGCCGCTTGTCAATTCAAACCACTGGAGGAGAAATTAAATTAGGCACTGGTATGGCACAACTTCGTTCTTTTCTTGTGTTTGTTTATAACGTGTCCTCATCCTCTTCCTCGAATACATTGCCTTCTGGATGCAAATTGTTGAGGGTGCTAGATTTGCAATATGTTCCAATTGATATACCGCCAAAAGAACTTGCGTACTTATTCAATTTAAGATACTTAAATTTAAGGGGAACTACAGTTAAGAAGCTTCCTGAATCCATTGGAAACCTCCGCAACCTTCAAACTTTGGATATCAGGGACTCAAAGATAGAGGTACTTCCAAGTGGAATTGCCAAGTTGCAAAACTTGCGCCATCTTATTATGTATCGTCGCACTGAAGAGCATAGGGGCTTCAGATATGTGAATGGGACAAGATCACCATCAAATATATGTATGTTGAAGAAATTGCAAGTTTTGGCGTGTGTTGACTTAGAAGGAAACATTGTTAAACTTGTGGGTAATATGACCCAACTTAGAAGGATTGGAATTACGAATGTAAAAGAAACAGACGAGATGGACCTATGTGCCTCAATTCAAAAGATGAAGCAACTTCACTACTTGGGTCTAATGTCAAGCGATGAAGAGGAAGTTCTTCAAACAAACGCACTATGCTCACCTCCTCCCCACCTTCAAACTCTTGTTTTGGTTGGCAAATTGGAAATTGTGCCACGTTGGTTCTTTTCACTCCAGAGCCTCACAAAATTGCACCTGCATTGGTCTAGAATTGAAGAAGATTTGCTACCTTACATTGAAGCACTGCCCAATCTGGAAGGTCTTATACTTGTTAATGCATATGCTGGCAGAGAGTTATGTTTCAGCAGAGGCTTTGTAAAGCTTAAGGATTTGCGTTTCGTTGTTTGCCCCTTATTGAACAAGATAACTATAGAAAAAGGGGTGATGTCTAATCTCCAATCCTTATACCTTGATGAGTGCCTAGAACTAAACACAATGCCACAGGGTCTTCAATACCTCACTGAACTAAAAGAATTGAAATTGACGTTTGTATCAAAGGAACTTGCGGATTCCATACGAGAAGGAGGTGTGGATCGTGAAAATGTACAACACATTCCTGAGATCGACTATTTTTACAAATCGTCACTGGGGAGGGTGTGTCGTGAAAGCTTGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

918

Amino Acids

104.96

Weight (kDa)

8.3

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1671
AarI CACCTGC 1 cut(s) 2340
AasI GACNNNNNNGTC 1 cut(s) 638
AatII GACGTC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 2340
AccB1I GGYRCC 1 cut(s) 1379
AccI GTMKAC 1 cut(s) 1179
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 9 cut(s) 349, 457, 467, 591, 1501, 1588, 1763, 1855, 2642
AclWI GGATC 2 cut(s) 601, 2676
AcsI RAATTY 3 cut(s) 725, 766, 1804
AcuI CTGAAG 3 cut(s) 1374, 1960, 1980
AcyI GRCGYC 1 cut(s) 328
AfaI GTAC 6 cut(s) 156, 827, 963, 1781, 1899, 2682
AfiI CCNNNNNNNGG 2 cut(s) 1117, 1501
AflII CTTAAG 1 cut(s) 2459
AflIII ACRYGT 3 cut(s) 243, 1441, 1674
AjiI CACGTC 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 1145, 1177
AleI CACNNNNGTG 1 cut(s) 660
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
Alw21I GWGCWC 1 cut(s) 501
AlwI GGATC 2 cut(s) 601, 2676
AlwNI CAGNNNCTG 1 cut(s) 799
Aor13HI TCCGGA 1 cut(s) 379
AoxI GGCC 5 cut(s) 3, 123, 201, 1108, 1469
ApeKI GCWGC 3 cut(s) 159, 1023, 1417
ApoI RAATTY 3 cut(s) 725, 766, 1804
Asp700I GAANNNNTTC 3 cut(s) 650, 1160, 2214
AspLEI GCGC 2 cut(s) 1587, 1935
AspS9I GGNCC 2 cut(s) 751, 2140
AsuHPI GGTGA 4 cut(s) 968, 1992, 2229, 2530
AsuII TTCGAA 1 cut(s) 1321
AvaII GGWCC 2 cut(s) 751, 2140
BaeI ACNNNNGTAYC 2 cut(s) 2610, 2643
BanI GGYRCC 1 cut(s) 1379
BanII GRGCYC 1 cut(s) 501
BarI GAAGNNNNNNTAC 6 cut(s) 1163, 1195, 2346, 2378, 2385, 2417
BauI CACGAG 1 cut(s) 500
BbsI GAAGAC 5 cut(s) 222, 608, 942, 1314, 2576
Bbv12I GWGCWC 1 cut(s) 501
BbvCI CCTCAGC 1 cut(s) 1083
BbvI GCAGC 3 cut(s) 171, 1035, 1429
BccI CCATC 7 cut(s) 260, 580, 1364, 1547, 1944, 2011, 2131
BceAI ACGGC 1 cut(s) 138
BcgI CGANNNNNNTGC 2 cut(s) 1684, 1718
BclI TGATCA 1 cut(s) 531
BfaI CTAG 4 cut(s) 1733, 2343, 2558, 2752
BfmI CTRYAG 4 cut(s) 756, 791, 1818, 2505
BfrI CTTAAG 1 cut(s) 2459
BfuAI ACCTGC 1 cut(s) 2340
BisI GCNGC 4 cut(s) 160, 1024, 1418, 1588
BlsI GCNGC 4 cut(s) 161, 1025, 1419, 1589
Bme18I GGWCC 2 cut(s) 751, 2140
BmgBI CACGTC 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 751, 2140
BmiI GGNNCC 4 cut(s) 287, 461, 753, 1381
BmrI ACTGGG 1 cut(s) 2732
BmsI GCATC 5 cut(s) 68, 444, 953, 1476, 1703
BmuI ACTGGG 1 cut(s) 2732
BpiI GAAGAC 5 cut(s) 222, 608, 942, 1314, 2576
BpmI CTGGAG 2 cut(s) 1629, 2294
Bpu10I CCTNAGC 1 cut(s) 1083
Bpu14I TTCGAA 1 cut(s) 1321
BpuEI CTTGAG 1 cut(s) 68
BsaBI GATNNNNATC 2 cut(s) 387, 2002
BsaHI GRCGYC 1 cut(s) 328
BsaWI WCCGGW 1 cut(s) 379
BsaXI ACNNNNNCTCC 2 cut(s) 2719, 2749
Bsc4I CCNNNNNNNGG 2 cut(s) 1117, 1501
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 3 cut(s) 1612, 1636, 2727
Bse3DI GCAATG 1 cut(s) 1700
Bse8I GATNNNNATC 2 cut(s) 387, 2002
BseAI TCCGGA 1 cut(s) 379
BseGI GGATG 7 cut(s) 59, 263, 591, 847, 944, 1682, 1718
BseJI GATNNNNATC 2 cut(s) 387, 2002
BseLI CCNNNNNNNGG 2 cut(s) 1117, 1501
BseMI GCAATG 1 cut(s) 1700
BseMII CTCAG 5 cut(s) 132, 1050, 1074, 1392, 2685
BseNI ACTGG 3 cut(s) 1612, 1636, 2727
BseRI GAGGAG 3 cut(s) 980, 1626, 2232
BseXI GCAGC 3 cut(s) 171, 1035, 1429
BsgI GTGCAG 1 cut(s) 1247
BshFI GGCC 5 cut(s) 5, 125, 203, 1110, 1471
BshNI GGYRCC 1 cut(s) 1379
BsiHKAI GWGCWC 1 cut(s) 501
BsiSI CCGG 2 cut(s) 72, 380
BslFI GGGAC 3 cut(s) 737, 1895, 2005
BslI CCNNNNNNNGG 2 cut(s) 1117, 1501
BsmFI GGGAC 3 cut(s) 737, 1895, 2005
BsmI GAATGC 2 cut(s) 303, 1031
BsnI GGCC 5 cut(s) 5, 125, 203, 1110, 1471
Bsp119I TTCGAA 1 cut(s) 1321
Bsp1286I GDGCHC 1 cut(s) 501
Bsp13I TCCGGA 1 cut(s) 379
Bsp1407I TGTACA 1 cut(s) 2680
Bsp143I GATC 5 cut(s) 531, 593, 1997, 2668, 2697
BspACI CCGC 9 cut(s) 349, 457, 467, 591, 1501, 1588, 1763, 1855, 2642
BspANI GGCC 5 cut(s) 5, 125, 203, 1110, 1471
BspCNI CTCAG 5 cut(s) 133, 1049, 1075, 1393, 2686
BspEI TCCGGA 1 cut(s) 379
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 4 cut(s) 287, 461, 753, 1381
BspMAI CTGCAG 1 cut(s) 760
BspMI ACCTGC 1 cut(s) 2340
BspPI GGATC 2 cut(s) 601, 2676
BspQI GCTCTTC 1 cut(s) 1956
BspT104I TTCGAA 1 cut(s) 1321
BspT107I GGYRCC 1 cut(s) 1379
BspTI CTTAAG 1 cut(s) 2459
BsrDI GCAATG 1 cut(s) 1700
BsrFI RCCGGY 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 2680
BsrI ACTGG 3 cut(s) 1612, 1636, 2727
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 5 cut(s) 531, 593, 1997, 2668, 2697
BssNI GRCGYC 1 cut(s) 328
BssSI CACGAG 1 cut(s) 500
Bst2BI CACGAG 1 cut(s) 500
Bst4CI ACNGT 5 cut(s) 659, 1055, 1280, 1292, 1822
Bst6I CTCTTC 4 cut(s) 955, 1693, 1956, 2199
BstACI GRCGYC 1 cut(s) 328
BstAFI CTTAAG 1 cut(s) 2459
BstAPI GCANNNNNTGC 1 cut(s) 1930
BstAUI TGTACA 1 cut(s) 2680
BstBI TTCGAA 1 cut(s) 1321
BstC8I GCNNGC 4 cut(s) 187, 1436, 1509, 2422
BstDEI CTNAG 8 cut(s) 141, 1036, 1083, 1244, 1401, 2053, 2096, 2694
BstF5I GGATG 7 cut(s) 59, 263, 591, 847, 944, 1682, 1718
BstHHI GCGC 2 cut(s) 1587, 1935
BstKTI GATC 5 cut(s) 534, 596, 2000, 2671, 2700
BstMBI GATC 5 cut(s) 531, 593, 1997, 2668, 2697
BstMWI GCNNNNNNNGC 6 cut(s) 195, 796, 1037, 1127, 1738, 1930
BstNSI RCATGY 4 cut(s) 247, 1438, 1445, 1482
BstSFI CTRYAG 4 cut(s) 756, 791, 1818, 2505
BstV1I GCAGC 3 cut(s) 171, 1035, 1429
BstV2I GAAGAC 5 cut(s) 222, 608, 942, 1314, 2576
BstXI CCANNNNNNTGG 1 cut(s) 1167
BsuRI GGCC 5 cut(s) 5, 125, 203, 1110, 1471
BtgZI GCGATG 1 cut(s) 2214
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 7 cut(s) 59, 263, 591, 847, 944, 1682, 1718
BtsI GCAGTG 1 cut(s) 2378
BtsIMutI CAGTG 8 cut(s) 655, 1276, 1605, 1629, 1956, 2378, 2595, 2720
BveI ACCTGC 1 cut(s) 2340
Cac8I GCNNGC 4 cut(s) 187, 1436, 1509, 2422
CaiI CAGNNNCTG 1 cut(s) 799
CciI TCATGA 1 cut(s) 262
CfoI GCGC 2 cut(s) 1587, 1935
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 751, 2140
CseI GACGC 1 cut(s) 178
Csp6I GTAC 6 cut(s) 155, 826, 962, 1780, 1898, 2681
CviQI GTAC 6 cut(s) 155, 826, 962, 1780, 1898, 2681
DdeI CTNAG 8 cut(s) 141, 1036, 1083, 1244, 1401, 2053, 2096, 2694
DpnI GATC 5 cut(s) 533, 595, 1999, 2670, 2699
DpnII GATC 5 cut(s) 531, 593, 1997, 2668, 2697
DrdI GACNNNNNNGTC 1 cut(s) 638
DseDI GACNNNNNNGTC 1 cut(s) 638
Eam1104I CTCTTC 4 cut(s) 955, 1693, 1956, 2199
EarI CTCTTC 4 cut(s) 955, 1693, 1956, 2199
EciI GGCGGA 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 499
Eco147I AGGCCT 1 cut(s) 1110
Eco24I GRGCYC 1 cut(s) 501
Eco32I GATATC 2 cut(s) 856, 1876
Eco47I GGWCC 2 cut(s) 751, 2140
Eco53kI GAGCTC 1 cut(s) 499
Eco57I CTGAAG 3 cut(s) 1374, 1960, 1980
EcoICRI GAGCTC 1 cut(s) 499
EcoO109I RGGNCCY 1 cut(s) 751
EcoRI GAATTC 2 cut(s) 725, 766
EcoRV GATATC 2 cut(s) 856, 1876
EcoT22I ATGCAT 1 cut(s) 2416
EcoT38I GRGCYC 1 cut(s) 501
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FaqI GGGAC 3 cut(s) 737, 1895, 2005
FauI CCCGC 1 cut(s) 1494
FauNDI CATATG 1 cut(s) 2416
FbaI TGATCA 1 cut(s) 531
FblI GTMKAC 1 cut(s) 1179
Fnu4HI GCNGC 4 cut(s) 160, 1024, 1418, 1588
FokI GGATG 7 cut(s) 46, 270, 598, 854, 931, 1669, 1725
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 4 cut(s) 160, 1024, 1418, 1588
FspBI CTAG 4 cut(s) 1733, 2343, 2558, 2752
GlaI GCGC 2 cut(s) 1586, 1934
GluI GCNGC 4 cut(s) 160, 1024, 1418, 1588
GsuI CTGGAG 2 cut(s) 1629, 2294
HaeIII GGCC 5 cut(s) 5, 125, 203, 1110, 1471
HapII CCGG 2 cut(s) 72, 380
HgaI GACGC 1 cut(s) 178
HhaI GCGC 2 cut(s) 1587, 1935
Hin1I GRCGYC 1 cut(s) 328
Hin6I GCGC 2 cut(s) 1585, 1933
HinP1I GCGC 2 cut(s) 1585, 1933
HincII GTYRAC 1 cut(s) 2050
HindII GTYRAC 1 cut(s) 2050
HindIII AAGCTT 4 cut(s) 712, 1829, 2456, 2743
HinfI GANTC 8 cut(s) 388, 470, 815, 912, 1318, 1838, 1883, 2645
HpaII CCGG 2 cut(s) 72, 380
HphI GGTGA 4 cut(s) 968, 1992, 2229, 2530
Hpy166II GTNNAC 3 cut(s) 1061, 1180, 2050
Hpy188I TCNGA 6 cut(s) 194, 326, 393, 1143, 1525, 1979
Hpy8I GTNNAC 3 cut(s) 1061, 1180, 2050
Hpy99I CGWCG 2 cut(s) 635, 1956
HpyCH4III ACNGT 5 cut(s) 659, 1055, 1280, 1292, 1822
HpyCH4IV ACGT 6 cut(s) 176, 328, 939, 1674, 2293, 2621
HpyF10VI GCNNNNNNNGC 6 cut(s) 195, 796, 1037, 1127, 1738, 1930
HpyF3I CTNAG 8 cut(s) 141, 1036, 1083, 1244, 1401, 2053, 2096, 2694
HpySE526I ACGT 6 cut(s) 176, 328, 939, 1674, 2293, 2621
Hsp92I GRCGYC 1 cut(s) 328
HspAI GCGC 2 cut(s) 1585, 1933
Kpn2I TCCGGA 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 5 cut(s) 531, 593, 1997, 2668, 2697
LguI GCTCTTC 1 cut(s) 1956
LmnI GCTCC 3 cut(s) 106, 1012, 1504
Lsp1109I GCAGC 3 cut(s) 171, 1035, 1429
LweI GCATC 5 cut(s) 68, 444, 953, 1476, 1703
MaeI CTAG 4 cut(s) 1733, 2343, 2558, 2752
MaeII ACGT 6 cut(s) 176, 328, 939, 1674, 2293, 2621
MaeIII GTNAC 3 cut(s) 37, 670, 2718
MalI GATC 5 cut(s) 533, 595, 1999, 2670, 2699
MboI GATC 5 cut(s) 531, 593, 1997, 2668, 2697
MfeI CAATTG 2 cut(s) 535, 1752
MhlI GDGCHC 1 cut(s) 501
MlyI GAGTC 2 cut(s) 824, 1877
Mph1103I ATGCAT 1 cut(s) 2416
MroI TCCGGA 1 cut(s) 379
MroXI GAANNNNTTC 3 cut(s) 650, 1160, 2214
MslI CAYNNNNRTG 3 cut(s) 660, 1165, 1634
MspCI CTTAAG 1 cut(s) 2459
MspI CCGG 2 cut(s) 72, 380
MunI CAATTG 2 cut(s) 535, 1752
Mva1269I GAATGC 2 cut(s) 303, 1031
MwoI GCNNNNNNNGC 6 cut(s) 195, 796, 1037, 1127, 1738, 1930
NdeI CATATG 1 cut(s) 2416
NdeII GATC 5 cut(s) 531, 593, 1997, 2668, 2697
NlaIV GGNNCC 4 cut(s) 287, 461, 753, 1381
NmuCI GTSAC 2 cut(s) 37, 2718
NsiI ATGCAT 1 cut(s) 2416
NspI RCATGY 4 cut(s) 247, 1438, 1445, 1482
NspV TTCGAA 1 cut(s) 1321
OliI CACNNNNGTG 1 cut(s) 660
PaeI GCATGC 1 cut(s) 1438
PagI TCATGA 1 cut(s) 262
PaqCI CACCTGC 1 cut(s) 2340
PceI AGGCCT 1 cut(s) 1110
PciI ACATGT 2 cut(s) 243, 1441
PciSI GCTCTTC 1 cut(s) 1956
PctI GAATGC 2 cut(s) 303, 1031
PdmI GAANNNNTTC 3 cut(s) 650, 1160, 2214
PfeI GAWTC 6 cut(s) 388, 470, 912, 1318, 1838, 2645
PkrI GCNGC 4 cut(s) 161, 1025, 1419, 1589
PleI GAGTC 2 cut(s) 823, 1877
PpsI GAGTC 2 cut(s) 823, 1877
PpuMI RGGWCCY 1 cut(s) 751
PscI ACATGT 2 cut(s) 243, 1441
PsiI TTATAA 1 cut(s) 1671
Psp124BI GAGCTC 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 751
PspN4I GGNNCC 4 cut(s) 287, 461, 753, 1381
PspPI GGNCC 2 cut(s) 751, 2140
PspPPI RGGWCCY 1 cut(s) 751
PstI CTGCAG 1 cut(s) 760
PstNI CAGNNNCTG 1 cut(s) 799
RsaI GTAC 6 cut(s) 156, 827, 963, 1781, 1899, 2682
RsaNI GTAC 6 cut(s) 155, 826, 962, 1780, 1898, 2681
RseI CAYNNNNRTG 3 cut(s) 660, 1165, 1634
SacI GAGCTC 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 1956
SatI GCNGC 4 cut(s) 160, 1024, 1418, 1588
Sau3AI GATC 5 cut(s) 531, 593, 1997, 2668, 2697
Sau96I GGNCC 2 cut(s) 751, 2140
SchI GAGTC 2 cut(s) 824, 1877
SduI GDGCHC 1 cut(s) 501
SfaNI GCATC 5 cut(s) 68, 444, 953, 1476, 1703
SfcI CTRYAG 4 cut(s) 756, 791, 1818, 2505
SfuI TTCGAA 1 cut(s) 1321
SinI GGWCC 2 cut(s) 751, 2140
SmiMI CAYNNNNRTG 3 cut(s) 660, 1165, 1634
SmlI CTYRAG 2 cut(s) 47, 2459
SmoI CTYRAG 2 cut(s) 47, 2459
SphI GCATGC 1 cut(s) 1438
SseBI AGGCCT 1 cut(s) 1110
SsiI CCGC 9 cut(s) 349, 457, 467, 591, 1501, 1588, 1763, 1855, 2642
SspMI CTAG 4 cut(s) 1733, 2343, 2558, 2752
SstI GAGCTC 1 cut(s) 501
StuI AGGCCT 1 cut(s) 1110
TaaI ACNGT 5 cut(s) 659, 1055, 1280, 1292, 1822
TaiI ACGT 6 cut(s) 179, 331, 942, 1677, 2296, 2624
TaqI TCGA 7 cut(s) 271, 910, 928, 1164, 1321, 1694, 2700
TatI WGTACW 2 cut(s) 961, 2680
TauI GCSGC 1 cut(s) 1590
TfiI GAWTC 6 cut(s) 388, 470, 912, 1318, 1838, 2645
TscAI CASTG 8 cut(s) 662, 1283, 1612, 1636, 1963, 2385, 2602, 2727
TseFI GTSAC 2 cut(s) 37, 2718
TseI GCWGC 3 cut(s) 159, 1023, 1417
Tsp45I GTSAC 2 cut(s) 37, 2718
TspDTI ATGAA 7 cut(s) 99, 223, 560, 779, 1473, 2180, 2217
TspGWI ACGGA 1 cut(s) 1418
TspRI CASTG 8 cut(s) 662, 1283, 1612, 1636, 1963, 2385, 2602, 2727
Vha464I CTTAAG 1 cut(s) 2459
VpaK11BI GGWCC 2 cut(s) 751, 2140
XapI RAATTY 3 cut(s) 725, 766, 1804
XbaI TCTAGA 1 cut(s) 2342
XceI RCATGY 4 cut(s) 247, 1438, 1445, 1482
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 1179
XmnI GAANNNNTTC 3 cut(s) 650, 1160, 2214
XspI CTAG 4 cut(s) 1733, 2343, 2558, 2752
ZraI GACGTC 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 2416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.