Rh5BG120100

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000110
Physical Location & Seq
Forward (+)
11336373 .. 11339309
2937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG120100.1

Sequence Viewer

Length: 2697 bp
ATGGCCAATATGGCTTCATCTGCAACGGACCTCTTAATTGGAAAAATTGTGGCAATTCTTGAGAACGAAGGAACGACCATAGCCAGTATTTGGGATGAAGTTGATAAGATTAAGCAGGAGTTTTTAAGCATGAAAGCTTTCCTTGCGGATGCAGAGACCAACACAGCAAAAACGGAAGGAGAGAAATTGTGGGTTGCAAGCATTAGAGACTTAGCCCTTGATGTTGAAGATATAATCGATGAATTCATGTATCATATGTATGAGAAGCAAACTGGGGGTCGACTTTCAAGGGGGCTACGCAAAGCCATTCGCGCTCCAAGTAGTCTTTGGTTCAGGCATAAAATTGCAAAGAAGTTGCAGAAAATTACTGAAATGATCAAAGCCATTCCAGAGAGGAATCAAAGGTACGGTGTTGGCCTTGTTGGAGGAGCAACTACATCTGAAGATATTTACAATTTGGTGCAGAACCAAGCCGAGTCCTCTATTTTCATTATGGAAGACGAACTGGTTGGGATTGAAGGCAAGAAGCAAATACTAATGGGATGGCTCATGGATGAAGAGCAACACCAAACTCTTATATCTGTGGTTGGGATGGGTGGTTCTGGAAAGACAACTCTAGTTGCCAAGACCTTCACCAATGAACGGGTAAAGAGACATTTCGACTGTTGTGCATGGATTACCGTTTCCCAAACTTATGCTGTGGTAGACTTGTTTCGAAGCTTGATCATAGAACTCCACAAATCAAGGCAGGAAGAGTACCCTGCAAACTTAAATGCCATGAGCCGCATAGAATTGCTAGAGTTACTGACGAACTACTTGGAGTCTAAAAAATACCTAGTTGTTCTAGATGACGTGTGGGAGATAAGAGTTTGGAGAGAAATAAAGGTGTCACTTCAAGATAGACAACTCGGAAGTCGAATAGTACTTACAACTCGAAATGAAGAAGTAGCATCCAACTCTTTTGGAGTTGAAAGCTATGTTCACCACATTCAGCCCCTGCAAAATAATGAGGCTTGGGAACTTTTCAGCAAGAAAGCATTCTCCACTAATCAGCACAAAACTTGCCCACCTGAGCTTGAGTCATTGGCTTGCCAACTTGTGGAAAAGTGTGGAGGCCTTCCTTTGGCTATTGTGGCTTTAGGTGGTCTTATGTCTTCCAAGAAGTCCCTGGATCAATGGCAACGAGTCTGCAACAGCTTAAACTGGCATCTAGATAAGAATTCATTGCTAGACCCTGTGAAAAACATCTTGTTGCTGAGTTTCAATGATTTGCCATCTCAACTGAAGCATTGCTTCCTCTATTGCTCTCTATTCCCAGAAGATTTTGTAATTAACAGAACAAGGCTCATTAGATTGTGGATAGCCGAAGGATTTGTTGAACATGTGAAAGGGGTCACACCAGAAGAAGTTGCAGACGAATATCTTATGGAGCTCTGTTTCCGTAGCATGTTACAAGTTGTTGAGAGACATGATACGGGAAGGCCGAAACAAGTTAAGATGCATGATCTGATGCGAGAGCTTGCTTTGTCGACAGCCGAGAAGGAAAAGTTTGGTCTTATATATGACGGAAGAGAAGGAATGGAAGACATCTCAACCCGTCACTTGTCAATTCACAAAATGGATGGAGAAATTAAATCATGGCCGGGTATGTCAAGGATTCATTCTCTTCTTGTATTTGCCACTGACATGTCCTCATTGTCTTTCTCAAATGCACTGGTTTCTCGGTTCAAATTGTTGAGGACTCTAGACTTGGAGGATGTCCAAATTGATAAACTGCCGGGTGCAATTGTTGACTTGTTCAACTTGAGATACTTAAATTTGAAGGGCACTTTAATCGAGGAACTTCCAGAGTCCATAGGGCGTCTCCGCAACCTTCAATTTCTGAACATCAAGCATACTAAGATAGAGTCACTTCCACAAGGAATTACGAAGTTGCTAAACCTGCGCCATCTAATTATGTATCGCTACACTAGAAACTATCTGGACTACAAAATTGCGAGTGGGACAAAAGTGCCATCTAATATTTGTCAGTTGCGAAAATTGCATTCTTTTTCAATGATTGAATCAGAAGGGGACACTAGTAGACTTATCGGCAACATGACTCAACTTAGGAGCATCAGCATATCGAATCTGAAAGAAAGAGATGAGATTGACCTTTGGGTCTCAATTGAAAAGTTGACTCTACTTCAATCTATGGGTTTAATGGCAAGTAACGAAGAGGAAATTCTTCCGGTGAAAGCACAATGTCCACCTCTTCTGCACCTTCAAAAGCTTTATTTGATCGGCAAACTGCAAAACGGAATACCTTGGTTTTCTTCATTGCATAGCCTCACAACTCTGTTTTTGCATTGGTCAAGACTTGAAGAGGACTTACTACCTCAAATTGAAGCAATGCCCAATTTGACAAGGCTTGTTGTTAATAAGGCATATGCTGGGGAAGAGTTGTGTTTCCGCAGAGGCTTTGTAAAGCTGGAGAGGTTGGAGTTGTTGAATTTTGCCTCGGTGAAAAAGATGACTATAGGAAAATGGGTGATGCCAAATCTCCGCTACTTATGGATTGGCCACTTCATGGTATTGAAGACAGTGCCACTGGGCCTTGAACATCTTTCTAATCTACAAACTTTGGGCCTAGAAGATGTTCCCATGGAAGTTGTAAGGTCCATTCGGAAAGGAGGTGTGGATCGCTCTAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

898

Amino Acids

102.73

Weight (kDa)

6.94

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 96 1.4e-18 Rx N-terminal domain
NB-ARC PF00931 175 - 350 1.2e-46 NB-ARC domain
WHD_DRP PF23559 437 - 508 1.2e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 553 - 875 1.2e-37 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2159
Acc36I ACCTGC 1 cut(s) 1950
AccB7I CCANNNNNTGG 3 cut(s) 90, 1099, 2569
AccI GTMKAC 4 cut(s) 280, 705, 1529, 2083
AccII CGCG 1 cut(s) 312
AciI CCGC 5 cut(s) 146, 784, 1867, 2452, 2545
AclWI GGATC 2 cut(s) 1179, 2688
AcoI YGGCCR 3 cut(s) 3, 1640, 2560
AcsI RAATTY 5 cut(s) 242, 1219, 1816, 2223, 2491
AcuI CTGAAG 2 cut(s) 462, 1304
AcyI GRCGYC 1 cut(s) 1861
AfaI GTAC 3 cut(s) 407, 758, 924
AfiI CCNNNNNNNGG 5 cut(s) 90, 642, 1099, 1123, 2569
AflIII ACRYGT 3 cut(s) 852, 1381, 1686
AhlI ACTAGT 1 cut(s) 2078
AjiI CACGTC 1 cut(s) 853
AjnI CCWGG 1 cut(s) 1167
AloI GAACNNNNNNTCC 2 cut(s) 583, 615
AluBI AGCT 9 cut(s) 137, 720, 975, 1075, 1197, 1432, 1519, 2272, 2470
AluI AGCT 9 cut(s) 137, 720, 975, 1075, 1197, 1432, 1519, 2272, 2470
Alw21I GWGCWC 1 cut(s) 1434
Alw26I GTCTC 6 cut(s) 149, 201, 646, 1459, 1868, 2167
AlwI GGATC 2 cut(s) 1179, 2688
AlwNI CAGNNNCTG 1 cut(s) 997
AoxI GGCC 8 cut(s) 3, 415, 1114, 1481, 1640, 2560, 2593, 2626
ApoI RAATTY 5 cut(s) 242, 1219, 1816, 2223, 2491
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
Asp700I GAANNNNTTC 4 cut(s) 137, 1037, 2226, 2637
AspLEI GCGC 2 cut(s) 314, 1947
AspS9I GGNCC 4 cut(s) 28, 2593, 2626, 2658
AsuC2I CCSGG 2 cut(s) 1644, 1779
AsuHPI GGTGA 5 cut(s) 625, 974, 2245, 2515, 2542
AsuII TTCGAA 1 cut(s) 715
AvaII GGWCC 2 cut(s) 28, 2658
BaeGI GKGCMC 1 cut(s) 1829
BalI TGGCCA 2 cut(s) 5, 2562
BanII GRGCYC 1 cut(s) 1434
BarI GAAGNNNNNNTAC 2 cut(s) 2355, 2387
BbsI GAAGAC 4 cut(s) 504, 1146, 1590, 2585
Bbv12I GWGCWC 1 cut(s) 1434
BccI CCATC 6 cut(s) 537, 586, 1282, 1616, 1956, 2023
BcgI CGANNNNNNTGC 4 cut(s) 650, 684, 1816, 1850
BciT130I CCWGG 1 cut(s) 1169
BclI TGATCA 2 cut(s) 375, 723
BcnI CCSGG 2 cut(s) 1644, 1779
BcoDI GTCTC 6 cut(s) 149, 201, 646, 1459, 1868, 2167
BcuI ACTAGT 1 cut(s) 2078
BfmI CTRYAG 1 cut(s) 2517
BfuAI ACCTGC 1 cut(s) 1950
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 1 cut(s) 784
BlsI GCNGC 1 cut(s) 785
BmcAI AGTACT 1 cut(s) 924
Bme1390I CCNGG 3 cut(s) 1169, 1644, 1779
Bme18I GGWCC 2 cut(s) 28, 2658
BmgBI CACGTC 1 cut(s) 853
BmgT120I GGNCC 4 cut(s) 28, 2593, 2626, 2658
BmrFI CCNGG 3 cut(s) 1169, 1644, 1779
BmrI ACTGGG 2 cut(s) 282, 2600
BmsI GCATC 7 cut(s) 139, 959, 1216, 1488, 1500, 2124, 2523
BmuI ACTGGG 2 cut(s) 282, 2600
BpiI GAAGAC 4 cut(s) 504, 1146, 1590, 2585
BpmI CTGGAG 1 cut(s) 2492
Bpu10I CCTNAGC 1 cut(s) 1071
Bpu14I TTCGAA 1 cut(s) 715
BpuEI CTTGAG 3 cut(s) 80, 1097, 1825
BpuMI CCSGG 2 cut(s) 1644, 1779
Bsa29I ATCGAT 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 1861
BsaI GGTCTC 2 cut(s) 149, 2167
BsaJI CCNNGG 4 cut(s) 1167, 2306, 2499, 2643
BsaWI WCCGGW 1 cut(s) 2230
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 642, 1099, 1123, 2569
Bse1I ACTGG 6 cut(s) 84, 277, 510, 1208, 1719, 2595
Bse3DI GCAATG 4 cut(s) 1223, 1288, 2318, 2397
BseBI CCWGG 1 cut(s) 1169
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 4 cut(s) 1167, 2306, 2499, 2643
BseGI GGATG 8 cut(s) 100, 154, 548, 559, 597, 950, 1627, 1762
BseLI CCNNNNNNNGG 5 cut(s) 90, 642, 1099, 1123, 2569
BseMI GCAATG 4 cut(s) 1223, 1288, 2318, 2397
BseMII CTCAG 2 cut(s) 1062, 1247
BseNI ACTGG 6 cut(s) 84, 277, 510, 1208, 1719, 2595
BseRI GAGGAG 1 cut(s) 441
BseSI GKGCMC 1 cut(s) 1829
BseYI CCCAGC 1 cut(s) 2432
BsgI GTGCAG 2 cut(s) 482, 2243
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 8 cut(s) 5, 417, 1116, 1483, 1642, 2562, 2595, 2628
BshVI ATCGAT 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 1434
BsiSI CCGG 3 cut(s) 1643, 1778, 2231
BslFI GGGAC 3 cut(s) 1150, 2017, 2087
BslI CCNNNNNNNGG 5 cut(s) 90, 642, 1099, 1123, 2569
BsmAI GTCTC 6 cut(s) 149, 201, 646, 1459, 1868, 2167
BsmBI CGTCTC 1 cut(s) 1868
BsmFI GGGAC 3 cut(s) 1150, 2017, 2087
BsmI GAATGC 2 cut(s) 1037, 2044
BsnI GGCC 8 cut(s) 5, 417, 1116, 1483, 1642, 2562, 2595, 2628
Bso31I GGTCTC 2 cut(s) 149, 2167
Bsp119I TTCGAA 1 cut(s) 715
Bsp1286I GDGCHC 2 cut(s) 1434, 1829
Bsp143I GATC 6 cut(s) 375, 723, 1171, 1504, 2280, 2680
Bsp19I CCATGG 1 cut(s) 2643
BspACI CCGC 5 cut(s) 146, 784, 1867, 2452, 2545
BspANI GGCC 8 cut(s) 5, 417, 1116, 1483, 1642, 2562, 2595, 2628
BspCNI CTCAG 2 cut(s) 1063, 1248
BspDI ATCGAT 1 cut(s) 237
BspFNI CGCG 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 1950
BspPI GGATC 2 cut(s) 1179, 2688
BspQI GCTCTTC 1 cut(s) 552
BspT104I TTCGAA 1 cut(s) 715
BspTNI GGTCTC 2 cut(s) 149, 2167
BsrDI GCAATG 4 cut(s) 1223, 1288, 2318, 2397
BsrI ACTGG 6 cut(s) 84, 277, 510, 1208, 1719, 2595
BssECI CCNNGG 4 cut(s) 1167, 2306, 2499, 2643
BssMI GATC 6 cut(s) 375, 723, 1171, 1504, 2280, 2680
BssNI GRCGYC 1 cut(s) 1861
BssT1I CCWWGG 2 cut(s) 2306, 2643
Bst2UI CCWGG 1 cut(s) 1169
Bst4CI ACNGT 4 cut(s) 410, 665, 682, 2584
Bst6I CTCTTC 8 cut(s) 552, 747, 1564, 1671, 2211, 2259, 2358, 2433
BstACI GRCGYC 1 cut(s) 1861
BstBI TTCGAA 1 cut(s) 715
BstC8I GCNNGC 3 cut(s) 199, 1090, 1521
BstDEI CTNAG 6 cut(s) 211, 1071, 1256, 1899, 2108, 2688
BstDSI CCRYGG 1 cut(s) 2643
BstF5I GGATG 8 cut(s) 100, 154, 548, 559, 597, 950, 1627, 1762
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 2 cut(s) 314, 1947
BstKTI GATC 6 cut(s) 378, 726, 1174, 1507, 2283, 2683
BstMAI GTCTC 6 cut(s) 149, 201, 646, 1459, 1868, 2167
BstMBI GATC 6 cut(s) 375, 723, 1171, 1504, 2280, 2680
BstMWI GCNNNNNNNGC 7 cut(s) 11, 20, 143, 311, 1133, 1942, 2041
BstNI CCWGG 1 cut(s) 1169
BstNSI RCATGY 3 cut(s) 1385, 1450, 1690
BstSCI CCNGG 3 cut(s) 1167, 1642, 1777
BstSFI CTRYAG 1 cut(s) 2517
BstSLI GKGCMC 1 cut(s) 1829
BstUI CGCG 1 cut(s) 312
BstV2I GAAGAC 4 cut(s) 504, 1146, 1590, 2585
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 8 cut(s) 5, 417, 1116, 1483, 1642, 2562, 2595, 2628
BsuTUI ATCGAT 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 2643
BtrI CACGTC 1 cut(s) 853
BtsCI GGATG 8 cut(s) 100, 154, 548, 559, 597, 950, 1627, 1762
BtsIMutI CAGTG 4 cut(s) 1680, 1712, 2588, 2589
BveI ACCTGC 1 cut(s) 1950
Cac8I GCNNGC 3 cut(s) 199, 1090, 1521
CaiI CAGNNNCTG 1 cut(s) 997
CfoI GCGC 2 cut(s) 314, 1947
Cfr13I GGNCC 4 cut(s) 28, 2593, 2626, 2658
ClaI ATCGAT 1 cut(s) 237
CseI GACGC 1 cut(s) 1850
Csp6I GTAC 3 cut(s) 406, 757, 923
CviQI GTAC 3 cut(s) 406, 757, 923
DdeI CTNAG 6 cut(s) 211, 1071, 1256, 1899, 2108, 2688
DpnI GATC 6 cut(s) 377, 725, 1173, 1506, 2282, 2682
DpnII GATC 6 cut(s) 375, 723, 1171, 1504, 2280, 2680
DrdI GACNNNNNNGTC 1 cut(s) 2159
DseDI GACNNNNNNGTC 1 cut(s) 2159
EaeI YGGCCR 3 cut(s) 3, 1640, 2560
Eam1104I CTCTTC 8 cut(s) 552, 747, 1564, 1671, 2211, 2259, 2358, 2433
EarI CTCTTC 8 cut(s) 552, 747, 1564, 1671, 2211, 2259, 2358, 2433
Ecl136II GAGCTC 1 cut(s) 1432
Eco130I CCWWGG 2 cut(s) 2306, 2643
Eco147I AGGCCT 1 cut(s) 1116
Eco24I GRGCYC 1 cut(s) 1434
Eco31I GGTCTC 2 cut(s) 149, 2167
Eco47I GGWCC 2 cut(s) 28, 2658
Eco53kI GAGCTC 1 cut(s) 1432
Eco57I CTGAAG 2 cut(s) 462, 1304
EcoICRI GAGCTC 1 cut(s) 1432
EcoRI GAATTC 2 cut(s) 242, 1219
EcoRII CCWGG 1 cut(s) 1167
EcoT14I CCWWGG 2 cut(s) 2306, 2643
EcoT22I ATGCAT 1 cut(s) 1503
EcoT38I GRGCYC 1 cut(s) 1434
ErhI CCWWGG 2 cut(s) 2306, 2643
Esp3I CGTCTC 1 cut(s) 1868
FalI AAGNNNNNCTT 4 cut(s) 126, 158, 1277, 1309
FaqI GGGAC 3 cut(s) 1150, 2017, 2087
FauNDI CATATG 2 cut(s) 255, 2428
FbaI TGATCA 2 cut(s) 375, 723
FblI GTMKAC 4 cut(s) 280, 705, 1529, 2083
Fnu4HI GCNGC 1 cut(s) 784
FokI GGATG 8 cut(s) 107, 161, 555, 566, 604, 937, 1634, 1769
FriOI GRGCYC 1 cut(s) 1434
Fsp4HI GCNGC 1 cut(s) 784
GlaI GCGC 2 cut(s) 313, 1946
GluI GCNGC 1 cut(s) 784
GsaI CCCAGC 1 cut(s) 2436
GsuI CTGGAG 1 cut(s) 2492
HaeIII GGCC 8 cut(s) 5, 417, 1116, 1483, 1642, 2562, 2595, 2628
HapII CCGG 3 cut(s) 1643, 1778, 2231
HgaI GACGC 1 cut(s) 1850
HhaI GCGC 2 cut(s) 314, 1947
Hin1I GRCGYC 1 cut(s) 1861
Hin6I GCGC 2 cut(s) 312, 1945
HinP1I GCGC 2 cut(s) 312, 1945
HincII GTYRAC 4 cut(s) 281, 1530, 1792, 2178
HindII GTYRAC 4 cut(s) 281, 1530, 1792, 2178
HindIII AAGCTT 3 cut(s) 135, 718, 2270
HpaII CCGG 3 cut(s) 1643, 1778, 2231
HphI GGTGA 5 cut(s) 625, 974, 2245, 2515, 2542
Hpy166II GTNNAC 8 cut(s) 281, 706, 982, 1530, 1792, 2084, 2178, 2249
Hpy188I TCNGA 7 cut(s) 442, 911, 1509, 1884, 2068, 2133, 2667
Hpy8I GTNNAC 8 cut(s) 281, 706, 982, 1530, 1792, 2084, 2178, 2249
HpyCH4III ACNGT 4 cut(s) 410, 665, 682, 2584
HpyCH4IV ACGT 1 cut(s) 852
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 20, 143, 311, 1133, 1942, 2041
HpyF3I CTNAG 6 cut(s) 211, 1071, 1256, 1899, 2108, 2688
HpySE526I ACGT 1 cut(s) 852
Hsp92I GRCGYC 1 cut(s) 1861
HspAI GCGC 2 cut(s) 312, 1945
Ksp22I TGATCA 2 cut(s) 375, 723
Kzo9I GATC 6 cut(s) 375, 723, 1171, 1504, 2280, 2680
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 4 cut(s) 319, 428, 1429, 2112
LweI GCATC 7 cut(s) 139, 959, 1216, 1488, 1500, 2124, 2523
MaeII ACGT 1 cut(s) 852
MaeIII GTNAC 7 cut(s) 801, 888, 1393, 1449, 1598, 1908, 2210
MalI GATC 6 cut(s) 377, 725, 1173, 1506, 2282, 2682
MboI GATC 6 cut(s) 375, 723, 1171, 1504, 2280, 2680
MfeI CAATTG 2 cut(s) 1785, 2166
MhlI GDGCHC 2 cut(s) 1434, 1829
MlsI TGGCCA 2 cut(s) 5, 2562
MluNI TGGCCA 2 cut(s) 5, 2562
MlyI GAGTC 9 cut(s) 485, 830, 1088, 1194, 1735, 1859, 1916, 2095, 2173
MmeI TCCRAC 3 cut(s) 403, 978, 2460
Mox20I TGGCCA 2 cut(s) 5, 2562
Mph1103I ATGCAT 1 cut(s) 1503
MroXI GAANNNNTTC 4 cut(s) 137, 1037, 2226, 2637
MscI TGGCCA 2 cut(s) 5, 2562
MslI CAYNNNNRTG 2 cut(s) 258, 1685
Msp20I TGGCCA 2 cut(s) 5, 2562
MspI CCGG 3 cut(s) 1643, 1778, 2231
MspR9I CCNGG 3 cut(s) 1169, 1644, 1779
MunI CAATTG 2 cut(s) 1785, 2166
Mva1269I GAATGC 2 cut(s) 1037, 2044
MvaI CCWGG 1 cut(s) 1169
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 7 cut(s) 11, 20, 143, 311, 1133, 1942, 2041
NciI CCSGG 2 cut(s) 1644, 1779
NcoI CCATGG 1 cut(s) 2643
NdeI CATATG 2 cut(s) 255, 2428
NdeII GATC 6 cut(s) 375, 723, 1171, 1504, 2280, 2680
NmeAIII GCCGAG 2 cut(s) 499, 1561
NmuCI GTSAC 4 cut(s) 888, 1393, 1598, 1908
NsiI ATGCAT 1 cut(s) 1503
NspI RCATGY 3 cut(s) 1385, 1450, 1690
NspV TTCGAA 1 cut(s) 715
PceI AGGCCT 1 cut(s) 1116
PciI ACATGT 2 cut(s) 1381, 1686
PciSI GCTCTTC 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 1481
PctI GAATGC 2 cut(s) 1037, 2044
PdmI GAANNNNTTC 4 cut(s) 137, 1037, 2226, 2637
PfeI GAWTC 4 cut(s) 397, 1657, 2063, 2128
PflMI CCANNNNNTGG 3 cut(s) 90, 1099, 2569
PkrI GCNGC 1 cut(s) 785
PleI GAGTC 9 cut(s) 484, 829, 1087, 1193, 1735, 1858, 1915, 2095, 2173
PpsI GAGTC 9 cut(s) 484, 829, 1087, 1193, 1735, 1858, 1915, 2095, 2173
PscI ACATGT 2 cut(s) 1381, 1686
Psp124BI GAGCTC 1 cut(s) 1434
Psp6I CCWGG 1 cut(s) 1167
PspFI CCCAGC 1 cut(s) 2432
PspGI CCWGG 1 cut(s) 1167
PspPI GGNCC 4 cut(s) 28, 2593, 2626, 2658
PstNI CAGNNNCTG 1 cut(s) 997
RsaI GTAC 3 cut(s) 407, 758, 924
RsaNI GTAC 3 cut(s) 406, 757, 923
RseI CAYNNNNRTG 2 cut(s) 258, 1685
SacI GAGCTC 1 cut(s) 1434
SalI GTCGAC 2 cut(s) 279, 1528
SapI GCTCTTC 1 cut(s) 552
SatI GCNGC 1 cut(s) 784
Sau3AI GATC 6 cut(s) 375, 723, 1171, 1504, 2280, 2680
Sau96I GGNCC 4 cut(s) 28, 2593, 2626, 2658
ScaI AGTACT 1 cut(s) 924
SchI GAGTC 9 cut(s) 485, 830, 1088, 1194, 1735, 1859, 1916, 2095, 2173
ScrFI CCNGG 3 cut(s) 1169, 1644, 1779
SduI GDGCHC 2 cut(s) 1434, 1829
SfaNI GCATC 7 cut(s) 139, 959, 1216, 1488, 1500, 2124, 2523
SfcI CTRYAG 1 cut(s) 2517
SfuI TTCGAA 1 cut(s) 715
SinI GGWCC 2 cut(s) 28, 2658
SmiMI CAYNNNNRTG 2 cut(s) 258, 1685
SmlI CTYRAG 3 cut(s) 59, 1076, 1804
SmoI CTYRAG 3 cut(s) 59, 1076, 1804
SpeI ACTAGT 1 cut(s) 2078
SseBI AGGCCT 1 cut(s) 1116
SsiI CCGC 5 cut(s) 146, 784, 1867, 2452, 2545
SspI AATATT 1 cut(s) 2023
SstI GAGCTC 1 cut(s) 1434
StuI AGGCCT 1 cut(s) 1116
StyD4I CCNGG 3 cut(s) 1167, 1642, 1777
StyI CCWWGG 2 cut(s) 2306, 2643
TaaI ACNGT 4 cut(s) 410, 665, 682, 2584
TaiI ACGT 1 cut(s) 855
TaqI TCGA 9 cut(s) 237, 280, 660, 715, 916, 934, 1529, 1836, 2126
TatI WGTACW 1 cut(s) 922
TauI GCSGC 1 cut(s) 786
TfiI GAWTC 4 cut(s) 397, 1657, 2063, 2128
TscAI CASTG 4 cut(s) 1687, 1719, 2589, 2595
TseFI GTSAC 4 cut(s) 888, 1393, 1598, 1908
Tsp45I GTSAC 4 cut(s) 888, 1393, 1598, 1908
TspGWI ACGGA 5 cut(s) 41, 188, 1430, 1581, 2313
TspRI CASTG 4 cut(s) 1687, 1719, 2589, 2595
Van91I CCANNNNNTGG 3 cut(s) 90, 1099, 2569
VpaK11BI GGWCC 2 cut(s) 28, 2658
XapI RAATTY 5 cut(s) 242, 1219, 1816, 2223, 2491
XbaI TCTAGA 3 cut(s) 844, 1210, 1744
XceI RCATGY 3 cut(s) 1385, 1450, 1690
XcmI CCANNNNNNNNNTGG 2 cut(s) 324, 1165
XmiI GTMKAC 4 cut(s) 280, 705, 1529, 2083
XmnI GAANNNNTTC 4 cut(s) 137, 1037, 2226, 2637
ZrmI AGTACT 1 cut(s) 924
Zsp2I ATGCAT 1 cut(s) 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.