Rorug06G0037200

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
4680601 .. 4683640
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0037200.1

Sequence Viewer

Length: 699 bp
ATGAAGGGGTTGCTGATAGGTTTTCGATTCGACCAAGAGGAGGAGCAAGGGGACGAGGAGAAGGAGGGTGATTGTGGGGGAAATGGGAGAGGAATTTGCAGCGAAAGAGAGTGTTCGATTAGGACGGAGAAGGAAGAAGAGAGGAGCTTTTCTTTGCTTGAAAGAAACGAAGTGGAAGAACAAGAAGAAAGAAACAAGGTGAGGGAAGTGGGGATTTTGAAGAAGAATCCCAAGATCTTGGAGGAGCAGATTCATAAGTTGAATAAGCAAATAATGGCAGCAAAAACTGGAAAGACAAATATTATGAGACTTCTACGAGATGATAATACAGAAGATCAAGATACTCAAAGACAGGCAGAGAGAATTGATATGGACACACATTTTCTCAGATTATATCAAGAAAGCGGAAACAAGGTTGTCAAAGAAAATCAAGAAGCATCTCAGCCTATGTTGATCGAACAGAACCAAAGTTTGTGCAGCAGTGATCAAAATGTCAATATATTTGGCTACCGTGACAGACAAATTACAAATGATCAAGGAGATTCTGCCATGATTGTAAATGAGGCTCTGTTTCCTTATCAAAATTCAAATATTGACAATACAACTTCGATGGGTAAGTACAATGATATTGAATTGTTCTTGATAATCGTCGTTTTGTTCCATTTGTACAAATTGGTGAAATTAGAAACACCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

232

Amino Acids

26.97

Weight (kDa)

4.82

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 405
AcsI RAATTY 2 cut(s) 93, 583
AfaI GTAC 2 cut(s) 620, 668
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 5 cut(s) 161, 220, 262, 588, 632
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 301
ApeKI GCWGC 3 cut(s) 99, 278, 477
ApoI RAATTY 2 cut(s) 93, 583
AsuHPI GGTGA 3 cut(s) 80, 211, 688
BbvI GCAGC 3 cut(s) 111, 290, 489
BccI CCATC 1 cut(s) 604
BclI TGATCA 2 cut(s) 484, 532
BcoDI GTCTC 1 cut(s) 301
BglII AGATCT 1 cut(s) 234
BisI GCNGC 3 cut(s) 100, 279, 478
BlsI GCNGC 3 cut(s) 101, 280, 479
BmsI GCATC 1 cut(s) 446
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 400, 455
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 5 cut(s) 53, 56, 71, 157, 257
BseXI GCAGC 3 cut(s) 111, 290, 489
BsgI GTGCAG 1 cut(s) 496
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 5 cut(s) 234, 334, 453, 484, 532
BspACI CCGC 1 cut(s) 405
BspCNI CTCAG 2 cut(s) 399, 454
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 1 cut(s) 292
BssMI GATC 5 cut(s) 234, 334, 453, 484, 532
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 666
BstDEI CTNAG 2 cut(s) 386, 441
BstKTI GATC 5 cut(s) 237, 337, 456, 487, 535
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 5 cut(s) 234, 334, 453, 484, 532
BstV1I GCAGC 3 cut(s) 111, 290, 489
BstX2I RGATCY 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 487
Csp6I GTAC 2 cut(s) 619, 667
CviAII CATG 1 cut(s) 550
CviJI RGCY 4 cut(s) 147, 445, 507, 566
CviKI_1 RGCY 4 cut(s) 147, 445, 507, 566
CviQI GTAC 2 cut(s) 619, 667
DdeI CTNAG 2 cut(s) 386, 441
DpnI GATC 5 cut(s) 236, 336, 455, 486, 534
DpnII GATC 5 cut(s) 234, 334, 453, 484, 532
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
FaeI CATG 1 cut(s) 553
FaiI YATR 7 cut(s) 255, 305, 371, 394, 449, 500, 551
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 549
FbaI TGATCA 2 cut(s) 484, 532
Fnu4HI GCNGC 3 cut(s) 100, 279, 478
Fsp4HI GCNGC 3 cut(s) 100, 279, 478
GluI GCNGC 3 cut(s) 100, 279, 478
Hin1II CATG 1 cut(s) 553
HinfI GANTC 4 cut(s) 27, 226, 250, 542
HphI GGTGA 3 cut(s) 80, 211, 688
Hpy188I TCNGA 1 cut(s) 389
Hpy188III TCNNGA 4 cut(s) 338, 398, 431, 640
Hpy99I CGWCG 1 cut(s) 653
HpyAV CCTTC 2 cut(s) 55, 124
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4V TGCA 2 cut(s) 99, 477
HpyF3I CTNAG 2 cut(s) 386, 441
Hsp92II CATG 1 cut(s) 553
Ksp22I TGATCA 2 cut(s) 484, 532
Kzo9I GATC 5 cut(s) 234, 334, 453, 484, 532
LmnI GCTCC 3 cut(s) 43, 144, 244
LpnPI CCDG 2 cut(s) 273, 338
Lsp1109I GCAGC 3 cut(s) 111, 290, 489
LweI GCATC 1 cut(s) 446
MaeIII GTNAC 1 cut(s) 512
MalI GATC 5 cut(s) 236, 336, 455, 486, 534
MboI GATC 5 cut(s) 234, 334, 453, 484, 532
MboII GAAGA 7 cut(s) 146, 149, 188, 197, 232, 235, 344
MflI RGATCY 1 cut(s) 234
MluCI AATT 7 cut(s) 93, 363, 522, 583, 632, 671, 680
MnlI CCTC 9 cut(s) 31, 34, 49, 58, 83, 135, 195, 235, 556
NdeII GATC 5 cut(s) 234, 334, 453, 484, 532
NlaIII CATG 1 cut(s) 553
NmuCI GTSAC 1 cut(s) 512
PfeI GAWTC 4 cut(s) 27, 226, 250, 542
PkrI GCNGC 3 cut(s) 101, 280, 479
PsuI RGATCY 1 cut(s) 234
RsaI GTAC 2 cut(s) 620, 668
RsaNI GTAC 2 cut(s) 619, 667
SatI GCNGC 3 cut(s) 100, 279, 478
Sau3AI GATC 5 cut(s) 234, 334, 453, 484, 532
SetI ASST 5 cut(s) 22, 149, 201, 417, 694
SfaNI GCATC 1 cut(s) 446
Sse9I AATT 7 cut(s) 93, 363, 522, 583, 632, 671, 680
SsiI CCGC 1 cut(s) 405
SspI AATATT 2 cut(s) 301, 592
TaaI ACNGT 1 cut(s) 512
TaqI TCGA 5 cut(s) 25, 30, 116, 456, 608
TasI AATT 7 cut(s) 93, 363, 522, 583, 632, 671, 680
TatI WGTACW 2 cut(s) 618, 666
TfiI GAWTC 4 cut(s) 27, 226, 250, 542
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 3 cut(s) 99, 278, 477
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 2 cut(s) 17, 242
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 1 cut(s) 487
XapI RAATTY 2 cut(s) 93, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.