MD15G1390600.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
48506155 .. 48506793
639 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1390600.v1.1.491

Sequence Viewer

Length: 639 bp
ATGATCCAAGAACTTTTTAGAGCAACAATGCAAGCTATTCCTCTAGACTTTAGCAATATGAGCTATGTACATTTGGTAGAAGTGCTCGTCGACTATTTGGAGCCAAAGCGTTATTTGATTGTCTTAGATGATGTGTGGGATATAAATCTTTGGAGACAAATAAATGTAGCACTTCCAAATGGAACACATGGAAGTCGAGTCATGCTTACAACTCGGAATGAAGGCATTGCTTCTTTTTCATTTCGAGTTGGAAGTCGCATGCACCATGTTCAGCCTCTTACTGACGATGAGGCTTGGGATCTTTTTTCCATGAAAGCTTTCTCTAGCTGGGATGACAGTAGTTGTCCAACAGAATTTAAACTCATAGCCGGGGATCTTGTTAGAAAATGCCAAGGCCTACCTCTAGGAATTGTAGCTTTGGGTGCTCTCATGTCAACTAAAAGATTTGTTCCCGAGTGGACGAAAGTATATAATAGCTTGAATTGGGAGCTAAGCAACAACCCCACACTTGAAGTAGTGAAGAGCATCTTATTACTAAGCTTCAATGATTTATCATATCAACTCAATAATTGCTTCTTATATTTTTGCATTTTCCCAGAAGATTATGTAGTTCAATGTAAGAGGCTTATCAGATTGTGA

Protein Analysis

213

Amino Acids

24.49

Weight (kDa)

5.56

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 4 - 108 5.3e-25 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AclWI GGATC 2 cut(s) 306, 381
AcsI RAATTY 1 cut(s) 353
AfaI GTAC 1 cut(s) 69
AgsI TTSAA 4 cut(s) 481, 512, 544, 614
AluBI AGCT 8 cut(s) 35, 63, 317, 327, 416, 477, 490, 540
AluI AGCT 8 cut(s) 35, 63, 317, 327, 416, 477, 490, 540
Alw21I GWGCWC 2 cut(s) 87, 427
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 2 cut(s) 306, 381
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 1 cut(s) 394
ApoI RAATTY 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 317
AsuC2I CCSGG 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 452
Bbv12I GWGCWC 2 cut(s) 87, 427
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 3 cut(s) 44, 324, 404
BlpI GCTNAGC 1 cut(s) 491
Bme1390I CCNGG 1 cut(s) 370
BmeT110I CYCGRG 1 cut(s) 452
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 370
BmsI GCATC 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 370
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 369, 391
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 369, 391
BseGI GGATG 1 cut(s) 337
BseJI GATNNNNATC 1 cut(s) 144
BseMI GCAATG 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 327
BshFI GGCC 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 87, 427
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 1 cut(s) 369
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 87, 427
Bsp1407I TGTACA 1 cut(s) 67
Bsp143I GATC 3 cut(s) 3, 298, 373
Bsp1720I GCTNAGC 1 cut(s) 491
BspANI GGCC 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 2 cut(s) 306, 381
BspQI GCTCTTC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 369, 391
BssMI GATC 3 cut(s) 3, 298, 373
BssT1I CCWWGG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 515
BstAUI TGTACA 1 cut(s) 67
BstC8I GCNNGC 2 cut(s) 33, 260
BstDEI CTNAG 3 cut(s) 124, 491, 536
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 3 cut(s) 6, 301, 376
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 3 cut(s) 3, 298, 373
BstMWI GCNNNNNNNGC 2 cut(s) 60, 422
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 368
BstX2I RGATCY 2 cut(s) 298, 373
BstYI RGATCY 2 cut(s) 298, 373
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 33, 260
Csp6I GTAC 1 cut(s) 68
CviAII CATG 6 cut(s) 188, 202, 259, 266, 310, 430
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 3 cut(s) 124, 491, 536
DpnI GATC 3 cut(s) 5, 300, 375
DpnII GATC 3 cut(s) 3, 298, 373
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 452
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 6 cut(s) 191, 205, 262, 269, 313, 433
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FatI CATG 6 cut(s) 187, 201, 258, 265, 309, 429
FblI GTMKAC 1 cut(s) 90
FokI GGATG 1 cut(s) 344
FspBI CTAG 3 cut(s) 44, 324, 404
GsaI CCCAGC 1 cut(s) 331
HaeIII GGCC 1 cut(s) 396
HapII CCGG 1 cut(s) 369
Hin1II CATG 6 cut(s) 191, 205, 262, 269, 313, 433
HincII GTYRAC 2 cut(s) 91, 435
HindII GTYRAC 2 cut(s) 91, 435
HindIII AAGCTT 2 cut(s) 315, 538
HinfI GANTC 1 cut(s) 198
HpaII CCGG 1 cut(s) 369
Hpy166II GTNNAC 3 cut(s) 91, 435, 459
Hpy188I TCNGA 2 cut(s) 216, 632
Hpy188III TCNNGA 2 cut(s) 44, 452
Hpy8I GTNNAC 3 cut(s) 91, 435, 459
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4V TGCA 3 cut(s) 31, 262, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 422
HpyF3I CTNAG 3 cut(s) 124, 491, 536
Hsp92II CATG 6 cut(s) 191, 205, 262, 269, 313, 433
Kzo9I GATC 3 cut(s) 3, 298, 373
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 2 cut(s) 100, 487
LpnPI CCDG 3 cut(s) 313, 382, 609
LweI GCATC 1 cut(s) 534
MaeI CTAG 3 cut(s) 44, 324, 404
MalI GATC 3 cut(s) 5, 300, 375
MboI GATC 3 cut(s) 3, 298, 373
MboII GAAGA 2 cut(s) 532, 611
MflI RGATCY 2 cut(s) 298, 373
MhlI GDGCHC 2 cut(s) 87, 427
MluCI AATT 4 cut(s) 353, 408, 481, 568
MlyI GAGTC 1 cut(s) 207
MmeI TCCRAC 2 cut(s) 229, 371
MnlI CCTC 5 cut(s) 51, 283, 285, 411, 615
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 1 cut(s) 357
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 60, 422
NciI CCSGG 1 cut(s) 370
NdeII GATC 3 cut(s) 3, 298, 373
NlaIII CATG 6 cut(s) 191, 205, 262, 269, 313, 433
NlaIV GGNNCC 1 cut(s) 102
NspI RCATGY 1 cut(s) 262
PaeI GCATGC 1 cut(s) 262
PceI AGGCCT 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 317
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 2 cut(s) 298, 373
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SalI GTCGAC 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 1 cut(s) 357
Sau3AI GATC 3 cut(s) 3, 298, 373
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 370
SduI GDGCHC 2 cut(s) 87, 427
SetI ASST 9 cut(s) 37, 65, 319, 329, 403, 418, 479, 492, 542
SfaNI GCATC 1 cut(s) 534
SphI GCATGC 1 cut(s) 262
Sse9I AATT 4 cut(s) 353, 408, 481, 568
SseBI AGGCCT 1 cut(s) 396
SspMI CTAG 3 cut(s) 44, 324, 404
StuI AGGCCT 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 368
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 338
TaqI TCGA 3 cut(s) 90, 196, 244
TasI AATT 4 cut(s) 353, 408, 481, 568
TatI WGTACW 1 cut(s) 67
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TspDTI ATGAA 3 cut(s) 228, 234, 326
XapI RAATTY 1 cut(s) 353
XbaI TCTAGA 1 cut(s) 43
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 3 cut(s) 44, 324, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.