Rh5CG144300

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000110
Physical Location & Seq
Reverse (-)
12838632 .. 12842588
3957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG144300.1

Sequence Viewer

Length: 774 bp
ATGGCCTTATCTGCTGCGGACCTCTTAATTGGAAAACTTGTGACAATTCTTGAGAACGAAGGAACAGCCATAGCAGGTGTTCGTGATCAAGTTGAAAAGATTAAGGAGGAGTTTCTAAGCATGAAAGCTTTCCTAGTGGATGCGGAAGCCAACAAAGCAAAAACTGAAGGAGAGAAATTGTGGGTTGCAAGAATCAGAGACTTGGCCCATGATGTTGAAGATACCATTGATGAATTCATGTATCAAACGTATGAGAAGCAAAGTGGGGGTCAAATTTCAAGGGGGCTAAACAAAACCATCTGTGGTCCGAGTAATCTTTGGTTCAGGCGTAAAACTGCAAAGAAGTTGCAGAAAATTACGGATATGATCAAAACCATTCCAGAGAGGAATCAAAGGTACGGTGTTGGTCTTTTAGGAGGAGCAATTGCATCTGAAGATATCCACAAATGTGTGCAGAACCAAGCGGACTCTTCTTTTTTCATTATGGAAGACGAACTGGTTGGGATTGAAGGCAAGAAGCAAATATTAATGGGATGGCTCATGGATGAAGAGCAACACCAAACTGTTATATCTGTCGTTGGGATGGGAGGTTCCGGAAAGACAACTCTAATTGCCAAGACCTTCTCCCACGAAAGGGTCGAGGTGGCGTGGTACCATGGCAACACGGTGGTACGAGTCGCGGAGGCTGAGGCAGCATGGGATGTGGTGGTACGGGTCATGGCACGGTGGCAGCGAGGTCGTGCGGCGATGTCATCTCCTGATGTGAGGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

257

Amino Acids

28.66

Weight (kDa)

6.26

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 88 4.2e-23 Rx N-terminal domain
NB-ARC PF00931 172 - 242 8.6e-09 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
Acc65I GGTACC 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 651
AccII CGCG 1 cut(s) 680
AccIII TCCGGA 1 cut(s) 593
AciI CCGC 5 cut(s) 17, 143, 464, 680, 743
AcsI RAATTY 2 cut(s) 233, 273
AcuI CTGAAG 2 cut(s) 186, 453
AfaI GTAC 4 cut(s) 398, 653, 672, 711
AfiI CCNNNNNNNGG 2 cut(s) 633, 634
AgsI TTSAA 4 cut(s) 95, 218, 279, 509
AleI CACNNNNGTG 1 cut(s) 447
AloI GAACNNNNNNTCC 2 cut(s) 574, 606
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 593
AoxI GGCC 2 cut(s) 3, 204
ApeKI GCWGC 3 cut(s) 14, 692, 730
ApoI RAATTY 2 cut(s) 233, 273
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AseI ATTAAT 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 128
Asp718I GGTACC 1 cut(s) 651
AspS9I GGNCC 3 cut(s) 19, 205, 305
AvaII GGWCC 2 cut(s) 19, 305
BanI GGYRCC 1 cut(s) 651
BbsI GAAGAC 1 cut(s) 495
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 2 cut(s) 704, 742
BccI CCATC 3 cut(s) 305, 528, 577
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BclI TGATCA 2 cut(s) 85, 366
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 4 cut(s) 15, 693, 731, 744
BlsI GCNGC 4 cut(s) 16, 694, 732, 745
Bme18I GGWCC 2 cut(s) 19, 305
BmgT120I GGNCC 3 cut(s) 19, 205, 305
BmiI GGNNCC 2 cut(s) 592, 653
BmsI GCATC 2 cut(s) 130, 437
BpiI GAAGAC 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 655
BsaWI WCCGGW 1 cut(s) 593
Bsc4I CCNNNNNNNGG 2 cut(s) 633, 634
Bse1I ACTGG 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 593
BseDI CCNNGG 1 cut(s) 655
BseGI GGATG 5 cut(s) 145, 539, 550, 588, 706
BseLI CCNNNNNNNGG 2 cut(s) 633, 634
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 2 cut(s) 122, 432
BseXI GCAGC 2 cut(s) 704, 742
BsgI GTGCAG 1 cut(s) 473
Bsh1236I CGCG 1 cut(s) 680
BshFI GGCC 2 cut(s) 5, 206
BshNI GGYRCC 1 cut(s) 651
BsiSI CCGG 1 cut(s) 594
BslI CCNNNNNNNGG 2 cut(s) 633, 634
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 2 cut(s) 5, 206
Bsp13I TCCGGA 1 cut(s) 593
Bsp143I GATC 2 cut(s) 85, 366
Bsp19I CCATGG 1 cut(s) 655
BspACI CCGC 5 cut(s) 17, 143, 464, 680, 743
BspANI GGCC 2 cut(s) 5, 206
BspCNI CTCAG 1 cut(s) 679
BspEI TCCGGA 1 cut(s) 593
BspFNI CGCG 1 cut(s) 680
BspLI GGNNCC 2 cut(s) 592, 653
BspMI ACCTGC 1 cut(s) 65
BspQI GCTCTTC 1 cut(s) 543
BspT107I GGYRCC 1 cut(s) 651
BsrI ACTGG 1 cut(s) 501
BssECI CCNNGG 1 cut(s) 655
BssMI GATC 2 cut(s) 85, 366
BssT1I CCWWGG 1 cut(s) 655
Bst4CI ACNGT 4 cut(s) 401, 565, 667, 726
Bst6I CTCTTC 2 cut(s) 475, 543
BstDEI CTNAG 2 cut(s) 116, 687
BstDSI CCRYGG 1 cut(s) 655
BstF5I GGATG 5 cut(s) 145, 539, 550, 588, 706
BstFNI CGCG 1 cut(s) 680
BstKTI GATC 2 cut(s) 88, 369
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 85, 366
BstMWI GCNNNNNNNGC 3 cut(s) 11, 155, 692
BstUI CGCG 1 cut(s) 680
BstV1I GCAGC 2 cut(s) 704, 742
BstV2I GAAGAC 1 cut(s) 495
BsuRI GGCC 2 cut(s) 5, 206
BtgI CCRYGG 1 cut(s) 655
BtgZI GCGATG 1 cut(s) 761
BtsCI GGATG 5 cut(s) 145, 539, 550, 588, 706
BveI ACCTGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 19, 205, 305
Csp6I GTAC 4 cut(s) 397, 652, 671, 710
CviAII CATG 7 cut(s) 121, 209, 238, 541, 656, 696, 718
CviJI RGCY 8 cut(s) 5, 68, 128, 149, 206, 286, 538, 686
CviKI_1 RGCY 8 cut(s) 5, 68, 128, 149, 206, 286, 538, 686
CviQI GTAC 4 cut(s) 397, 652, 671, 710
DdeI CTNAG 2 cut(s) 116, 687
DpnI GATC 2 cut(s) 87, 368
DpnII GATC 2 cut(s) 85, 366
Eam1104I CTCTTC 2 cut(s) 475, 543
EarI CTCTTC 2 cut(s) 475, 543
Eco130I CCWWGG 1 cut(s) 655
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 2 cut(s) 19, 305
Eco57I CTGAAG 2 cut(s) 186, 453
EcoRI GAATTC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 655
FaeI CATG 7 cut(s) 124, 212, 241, 544, 659, 699, 721
FatI CATG 7 cut(s) 120, 208, 237, 540, 655, 695, 717
FbaI TGATCA 2 cut(s) 85, 366
Fnu4HI GCNGC 4 cut(s) 15, 693, 731, 744
FokI GGATG 5 cut(s) 152, 546, 557, 595, 713
Fsp4HI GCNGC 4 cut(s) 15, 693, 731, 744
FspBI CTAG 1 cut(s) 134
GluI GCNGC 4 cut(s) 15, 693, 731, 744
HaeIII GGCC 2 cut(s) 5, 206
HapII CCGG 1 cut(s) 594
Hin1II CATG 7 cut(s) 124, 212, 241, 544, 659, 699, 721
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 4 cut(s) 192, 388, 467, 675
HpaII CCGG 1 cut(s) 594
Hpy188I TCNGA 3 cut(s) 197, 309, 433
Hpy188III TCNNGA 5 cut(s) 50, 83, 380, 594, 758
HpyAV CCTTC 4 cut(s) 53, 161, 503, 631
HpyCH4III ACNGT 4 cut(s) 401, 565, 667, 726
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 5 cut(s) 188, 338, 349, 428, 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 155, 692
HpyF3I CTNAG 2 cut(s) 116, 687
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 7 cut(s) 124, 212, 241, 544, 659, 699, 721
Kpn2I TCCGGA 1 cut(s) 593
KpnI GGTACC 1 cut(s) 655
Ksp22I TGATCA 2 cut(s) 85, 366
Kzo9I GATC 2 cut(s) 85, 366
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 1 cut(s) 419
LpnPI CCDG 5 cut(s) 60, 310, 393, 482, 607
Lsp1109I GCAGC 2 cut(s) 704, 742
LweI GCATC 2 cut(s) 130, 437
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 87, 368
MboI GATC 2 cut(s) 85, 366
MboII GAAGA 5 cut(s) 230, 446, 462, 500, 560
MfeI CAATTG 1 cut(s) 423
MluCI AATT 8 cut(s) 27, 45, 176, 233, 273, 354, 423, 609
MlyI GAGTC 2 cut(s) 461, 684
MroI TCCGGA 1 cut(s) 593
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 3 cut(s) 26, 102, 527
MslI CAYNNNNRTG 1 cut(s) 447
MspI CCGG 1 cut(s) 594
MunI CAATTG 1 cut(s) 423
MvnI CGCG 1 cut(s) 680
MwoI GCNNNNNNNGC 3 cut(s) 11, 155, 692
NcoI CCATGG 1 cut(s) 655
NdeII GATC 2 cut(s) 85, 366
NlaIII CATG 7 cut(s) 124, 212, 241, 544, 659, 699, 721
NlaIV GGNNCC 2 cut(s) 592, 653
NmuCI GTSAC 1 cut(s) 40
OliI CACNNNNGTG 1 cut(s) 447
PaqCI CACCTGC 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 2 cut(s) 636, 730
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 192, 388
PkrI GCNGC 4 cut(s) 16, 694, 732, 745
PleI GAGTC 2 cut(s) 461, 683
PpsI GAGTC 2 cut(s) 461, 683
PshBI ATTAAT 1 cut(s) 527
PspN4I GGNNCC 2 cut(s) 592, 653
PspPI GGNCC 3 cut(s) 19, 205, 305
RsaI GTAC 4 cut(s) 398, 653, 672, 711
RsaNI GTAC 4 cut(s) 397, 652, 671, 710
RseI CAYNNNNRTG 1 cut(s) 447
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 3 cut(s) 26, 102, 527
SatI GCNGC 4 cut(s) 15, 693, 731, 744
Sau3AI GATC 2 cut(s) 85, 366
Sau96I GGNCC 3 cut(s) 19, 205, 305
SchI GAGTC 2 cut(s) 461, 684
SetI ASST 9 cut(s) 24, 79, 130, 251, 398, 592, 623, 645, 739
SfaNI GCATC 2 cut(s) 130, 437
SinI GGWCC 2 cut(s) 19, 305
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 8 cut(s) 27, 45, 176, 233, 273, 354, 423, 609
SsiI CCGC 5 cut(s) 17, 143, 464, 680, 743
SspI AATATT 1 cut(s) 525
SspMI CTAG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 4 cut(s) 401, 565, 667, 726
TaiI ACGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 639
TasI AATT 8 cut(s) 27, 45, 176, 233, 273, 354, 423, 609
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 2 cut(s) 192, 388
Tru1I TTAA 3 cut(s) 26, 102, 527
Tru9I TTAA 3 cut(s) 26, 102, 527
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 3 cut(s) 14, 692, 730
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 5 cut(s) 137, 226, 246, 469, 561
TspGWI ACGGA 1 cut(s) 374
VpaK11BI GGWCC 2 cut(s) 19, 305
VspI ATTAAT 1 cut(s) 527
XapI RAATTY 2 cut(s) 233, 273
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.