MD06G1155600.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000110
Physical Location & Seq
Forward (+)
29815897 .. 29818568
2672 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1155600.v1.1.491

Sequence Viewer

Length: 1941 bp
ATGCTGAAGGCAAGGAACCACAAACAGAAGGAGAGAAAAACGTGGGTTACAAGCGTCAGAGATTTGACCTGCGATGCTGAAAATGTCATTGATGAGTTCCTGTATCACATATATGACAAGCAAAGTGCGACTCCATTTGCAAAATTGCTCCACAGAACCATTTACTTTCCAAAGAATCTTTGGCATCGGCATCGAATAGCCAAAAAATTACAGAAAATCACAAAAAAGATCAAAGCCATTCCAGAGAGGAATGAGAGATATGGTGTCTCTACAATAGAAGGAACAAGTTCGGATAGTGTTCCCAGATGGGTGAAGAACAAAGCCAAGTCTTCTCTTTATATTATGGAAGACGAACTAATCGGGATTGAAGACAAGAAGCAAACGTTAATGGGGTTATTGATGAATGGAAAGGAAAATGAAATGGTTGTGTCTGTGGTCGGGATGGGAGGATCAGGCAAGACAACTCTTGTTGCCAATACCTTCAACAACGAAAATGTAAAGTGGCATTTTGACTGTGACTTATTCAAAAATCTGATCAAGCAATTCCACCAAGGAAGAAAGGAAGAGGTGACTGCACAATTGGATTCCATGAGTTACAAAGAATTGTTAGAGATGTTGTCGACATACTTGAAGTCTAAAAGGTACCTAGTTGTATTGGATGATGTGTGGGACATTAAACTTTGGCAAGAAATAAGGATACCACTTCTTAATAGACATCATGGAAGTCGAATCATGCTTACAACTCGAAAGAAAGACATAGCATTCTATTCTTTTGAAGTTGAAAGTTGTCCTATTGAAATTGAACCTTGGGAAAACAATGAAGCTTGGGAGCTCTTTAGCAAGAAAGCATTCTCAACTTACGATAATAAATCTTGTCCACCAGAGCTTGAATCCTTAGCATGGAAACTTGTGGATAAGTGTGAAGGCCTACCTCTGGCAGTGGTAACTTTAGGTGGTCTAATGTCTTCCAAGAGGTCATCATCGGAATGGAAAAGCGTATATAACAGCTTAAATTGGCACTTGACTAACCATCCTATGTTGGAACCAATGAGCAACATCTTGTTGCTTAGTTTCAACAATTTGCCCAACCGGTTGAAGCCATGTTTCCTATATTGTGCCCTTTTCCCAGAAGATTATCTCATCAAAAGACAAAGGTTGATCAGGTTGTGGATAGCTGAAGGGTTTGTTGAACCAATTGATGGGGTCACACCAGAAGAAGTTGCAGAGGGCTATCTTGTGGAACTTATTGTTCGTAGCATGCTACAGGTTGAAAAGAATGAAGCTGGAGGACTAAAAGCATGTAAGATGCATGATCTATTGCATGAGCTTGCTTTGTCGACATCAAAAAAGGAAAAGTTTGGTGCTACGTATGTTGGCAGAGAAATAGTAGATAACGGTGAAATCCGCCGACTGTCAATTCAAACAGCTGAAAGAGAAATTAATTCTTGCCCAGGTATGTCAAAGCTTCGCTGCTTTTTTGTCTTTGGCGCTGGCATATTTATGTTCAAGAAATTGCCTTCTGGATTCAAGTTGTTGAGAGTTCTATATTTGGAGAATGCTCCAATTGAAAGATTTCCAGATGAACTAGTGTACTTGTTCAACTTAAGATATTTAAATTTGAAGGGAACTTTAATTGAGGAGCTTCCAGAATCCATGGGACGGCTGCGCAACCTTCAAACCTTGAACATCCGTGACAGTAAGATAAAGGCACTTCCAAAAGCAATCTCCAAGTTAGTAAACCTACGCCATCTAATCATGTATTGTTACGCTGTTGATTTGATGGCCTTTAGATTTCTCAATGGGACAAAAGCAGCATCCGATCTAAGTACATTACAGAAACTGCAAGTTTTGCAATCTGTTGAATCAGAAGCAAAGATTATTAAGGGATCAGGAAATGACCCAACTTACAAGCCTTGGTATTACAAATGTGAAAGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

647

Amino Acids

74.71

Weight (kDa)

9.06

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 4 - 42 1.5e-06 Rx N-terminal domain
NB-ARC PF00931 123 - 286 5.3e-35 NB-ARC domain
WHD_DRP PF23559 374 - 444 2e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 488 - 623 1.1e-21 Leucine-rich repeat region
LRR_8 PF13855 534 - 585 5.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1667
Acc36I ACCTGC 1 cut(s) 77
Acc65I GGTACC 1 cut(s) 642
AccB1I GGYRCC 1 cut(s) 642
AccB7I CCANNNNNTGG 1 cut(s) 1199
AccI GTMKAC 2 cut(s) 620, 1337
AciI CCGC 1 cut(s) 1405
AclI AACGTT 1 cut(s) 383
AclWI GGATC 2 cut(s) 457, 1894
AcsI RAATTY 1 cut(s) 1615
AcuI CTGAAG 2 cut(s) 26, 1197
AfaI GTAC 3 cut(s) 644, 1592, 1828
AfiI CCNNNNNNNGG 4 cut(s) 900, 934, 1199, 1659
AflII CTTAAG 1 cut(s) 1603
AgeI ACCGGT 1 cut(s) 1089
AhlI ACTAGT 1 cut(s) 1585
AjnI CCWGG 1 cut(s) 1450
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 2 cut(s) 457, 1894
AlwNI CAGNNNCTG 1 cut(s) 1840
AoxI GGCC 2 cut(s) 925, 1782
ApeKI GCWGC 3 cut(s) 1470, 1663, 1811
ApoI RAATTY 1 cut(s) 1615
AseI ATTAAT 1 cut(s) 1440
AsiGI ACCGGT 1 cut(s) 1089
Asp700I GAANNNNTTC 3 cut(s) 286, 848, 1572
Asp718I GGTACC 1 cut(s) 642
AspLEI GCGC 2 cut(s) 1490, 1668
AsuHPI GGTGA 3 cut(s) 322, 580, 1409
BaeGI GKGCMC 1 cut(s) 1120
BanI GGYRCC 1 cut(s) 642
BanII GRGCYC 1 cut(s) 834
BbsI GAAGAC 4 cut(s) 321, 354, 375, 957
Bbv12I GWGCWC 1 cut(s) 834
BbvI GCAGC 3 cut(s) 1457, 1650, 1823
BccI CCATC 6 cut(s) 300, 436, 1038, 1193, 1755, 1774
BceAI ACGGC 1 cut(s) 1676
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 1452
BciVI GTATCC 1 cut(s) 690
BclI TGATCA 2 cut(s) 534, 1158
BcoDI GTCTC 1 cut(s) 271
BcuI ACTAGT 1 cut(s) 1585
BfaI CTAG 2 cut(s) 647, 1586
BfmI CTRYAG 1 cut(s) 1262
BfoI RGCGCY 1 cut(s) 1491
BfrI CTTAAG 1 cut(s) 1603
BfuAI ACCTGC 1 cut(s) 77
BfuI GTATCC 1 cut(s) 690
BisI GCNGC 3 cut(s) 1471, 1664, 1812
BlsI GCNGC 3 cut(s) 1472, 1665, 1813
Bme1390I CCNGG 1 cut(s) 1452
BmiI GGNNCC 3 cut(s) 17, 644, 1044
BmrFI CCNGG 1 cut(s) 1452
BmsI GCATC 5 cut(s) 64, 193, 199, 1296, 1823
BpiI GAAGAC 4 cut(s) 321, 354, 375, 957
BpmI CTGGAG 1 cut(s) 1305
Bpu10I CCTNAGC 1 cut(s) 895
BsaAI YACGTR 1 cut(s) 1368
BsaJI CCNNGG 5 cut(s) 550, 806, 1450, 1653, 1913
BsaWI WCCGGW 1 cut(s) 1089
Bsc4I CCNNNNNNNGG 4 cut(s) 900, 934, 1199, 1659
Bse118I RCCGGY 1 cut(s) 1089
BseBI CCWGG 1 cut(s) 1452
BseDI CCNNGG 5 cut(s) 550, 806, 1450, 1653, 1913
BseGI GGATG 5 cut(s) 447, 664, 1030, 1686, 1814
BseLI CCNNNNNNNGG 4 cut(s) 900, 934, 1199, 1659
BseRI GAGGAG 1 cut(s) 1652
BseSI GKGCMC 1 cut(s) 1120
BseXI GCAGC 3 cut(s) 1457, 1650, 1823
BsgI GTGCAG 1 cut(s) 558
BshFI GGCC 2 cut(s) 927, 1784
BshNI GGYRCC 1 cut(s) 642
BshTI ACCGGT 1 cut(s) 1089
BsiHKAI GWGCWC 1 cut(s) 834
BsiSI CCGG 1 cut(s) 1090
BslFI GGGAC 3 cut(s) 683, 1671, 1816
BslI CCNNNNNNNGG 4 cut(s) 900, 934, 1199, 1659
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 3 cut(s) 683, 1671, 1816
BsmI GAATGC 3 cut(s) 761, 848, 1561
BsnI GGCC 2 cut(s) 927, 1784
Bsp1286I GDGCHC 2 cut(s) 834, 1120
Bsp143I GATC 7 cut(s) 228, 449, 534, 1158, 1312, 1819, 1886
Bsp19I CCATGG 1 cut(s) 1653
BspACI CCGC 1 cut(s) 1405
BspANI GGCC 2 cut(s) 927, 1784
BspLI GGNNCC 3 cut(s) 17, 644, 1044
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 2 cut(s) 457, 1894
BspT107I GGYRCC 1 cut(s) 642
BspTI CTTAAG 1 cut(s) 1603
BsrFI RCCGGY 1 cut(s) 1089
BssAI RCCGGY 1 cut(s) 1089
BssECI CCNNGG 5 cut(s) 550, 806, 1450, 1653, 1913
BssMI GATC 7 cut(s) 228, 449, 534, 1158, 1312, 1819, 1886
BssT1I CCWWGG 4 cut(s) 550, 806, 1653, 1913
Bst2UI CCWGG 1 cut(s) 1452
Bst4CI ACNGT 4 cut(s) 515, 1397, 1413, 1697
Bst6I CTCTTC 1 cut(s) 558
BstAFI CTTAAG 1 cut(s) 1603
BstAPI GCANNNNNTGC 1 cut(s) 1849
BstBAI YACGTR 1 cut(s) 1368
BstC8I GCNNGC 3 cut(s) 1259, 1329, 1492
BstDEI CTNAG 3 cut(s) 895, 1067, 1823
BstDSI CCRYGG 1 cut(s) 1653
BstF5I GGATG 5 cut(s) 447, 664, 1030, 1686, 1814
BstH2I RGCGCY 1 cut(s) 1491
BstHHI GCGC 2 cut(s) 1490, 1668
BstKTI GATC 7 cut(s) 231, 452, 537, 1161, 1315, 1822, 1889
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 7 cut(s) 228, 449, 534, 1158, 1312, 1819, 1886
BstMWI GCNNNNNNNGC 1 cut(s) 1849
BstNI CCWGG 1 cut(s) 1452
BstNSI RCATGY 3 cut(s) 1261, 1302, 1939
BstSCI CCNGG 1 cut(s) 1450
BstSFI CTRYAG 1 cut(s) 1262
BstSLI GKGCMC 1 cut(s) 1120
BstSNI TACGTA 1 cut(s) 1368
BstV1I GCAGC 3 cut(s) 1457, 1650, 1823
BstV2I GAAGAC 4 cut(s) 321, 354, 375, 957
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 2 cut(s) 927, 1784
BtgI CCRYGG 1 cut(s) 1653
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 5 cut(s) 447, 664, 1030, 1686, 1814
BtsI GCAGTG 1 cut(s) 945
BtsIMutI CAGTG 1 cut(s) 945
BveI ACCTGC 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 1259, 1329, 1492
CaiI CAGNNNCTG 1 cut(s) 1840
CfoI GCGC 2 cut(s) 1490, 1668
Cfr10I RCCGGY 1 cut(s) 1089
CseI GACGC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 643, 1591, 1827
CspAI ACCGGT 1 cut(s) 1089
CviQI GTAC 3 cut(s) 643, 1591, 1827
DdeI CTNAG 3 cut(s) 895, 1067, 1823
DpnI GATC 7 cut(s) 230, 451, 536, 1160, 1314, 1821, 1888
DpnII GATC 7 cut(s) 228, 449, 534, 1158, 1312, 1819, 1886
DraI TTTAAA 1 cut(s) 1614
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
EciI GGCGGA 1 cut(s) 1394
Ecl136II GAGCTC 1 cut(s) 832
Eco105I TACGTA 1 cut(s) 1368
Eco130I CCWWGG 4 cut(s) 550, 806, 1653, 1913
Eco147I AGGCCT 1 cut(s) 927
Eco24I GRGCYC 1 cut(s) 834
Eco53kI GAGCTC 1 cut(s) 832
Eco57I CTGAAG 2 cut(s) 26, 1197
EcoICRI GAGCTC 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 1450
EcoT14I CCWWGG 4 cut(s) 550, 806, 1653, 1913
EcoT22I ATGCAT 1 cut(s) 1311
EcoT38I GRGCYC 1 cut(s) 834
ErhI CCWWGG 4 cut(s) 550, 806, 1653, 1913
FaqI GGGAC 3 cut(s) 683, 1671, 1816
FbaI TGATCA 2 cut(s) 534, 1158
FblI GTMKAC 2 cut(s) 620, 1337
Fnu4HI GCNGC 3 cut(s) 1471, 1664, 1812
FokI GGATG 5 cut(s) 454, 671, 1017, 1673, 1801
FriOI GRGCYC 1 cut(s) 834
Fsp4HI GCNGC 3 cut(s) 1471, 1664, 1812
FspBI CTAG 2 cut(s) 647, 1586
FspI TGCGCA 1 cut(s) 1667
GlaI GCGC 2 cut(s) 1489, 1667
GluI GCNGC 3 cut(s) 1471, 1664, 1812
GsuI CTGGAG 1 cut(s) 1305
HaeII RGCGCY 1 cut(s) 1491
HaeIII GGCC 2 cut(s) 927, 1784
HapII CCGG 1 cut(s) 1090
HgaI GACGC 1 cut(s) 43
HhaI GCGC 2 cut(s) 1490, 1668
Hin6I GCGC 2 cut(s) 1488, 1666
HinP1I GCGC 2 cut(s) 1488, 1666
HincII GTYRAC 2 cut(s) 621, 1338
HindII GTYRAC 2 cut(s) 621, 1338
HindIII AAGCTT 2 cut(s) 822, 1463
HinfI GANTC 8 cut(s) 130, 175, 584, 729, 890, 1524, 1649, 1862
HpaII CCGG 1 cut(s) 1090
HphI GGTGA 3 cut(s) 322, 580, 1409
Hpy166II GTNNAC 5 cut(s) 621, 878, 1338, 1591, 1738
Hpy188I TCNGA 6 cut(s) 59, 292, 534, 985, 1819, 1867
Hpy188III TCNNGA 8 cut(s) 242, 361, 439, 1507, 1521, 1577, 1646, 1890
Hpy8I GTNNAC 5 cut(s) 621, 878, 1338, 1591, 1738
HpyAV CCTTC 8 cut(s) 22, 272, 490, 917, 1172, 1527, 1615, 1682
HpyCH4III ACNGT 4 cut(s) 515, 1397, 1413, 1697
HpyCH4IV ACGT 3 cut(s) 41, 383, 1367
HpyCH4V TGCA 7 cut(s) 140, 575, 1223, 1309, 1321, 1843, 1852
HpyF10VI GCNNNNNNNGC 1 cut(s) 1849
HpyF3I CTNAG 3 cut(s) 895, 1067, 1823
HpySE526I ACGT 3 cut(s) 41, 383, 1367
HspAI GCGC 2 cut(s) 1488, 1666
KpnI GGTACC 1 cut(s) 646
Ksp22I TGATCA 2 cut(s) 534, 1158
Kzo9I GATC 7 cut(s) 228, 449, 534, 1158, 1312, 1819, 1886
LmnI GCTCC 4 cut(s) 153, 829, 1564, 1639
Lsp1109I GCAGC 3 cut(s) 1457, 1650, 1823
LweI GCATC 5 cut(s) 64, 193, 199, 1296, 1823
MaeI CTAG 2 cut(s) 647, 1586
MaeII ACGT 3 cut(s) 41, 383, 1367
MaeIII GTNAC 8 cut(s) 46, 515, 568, 593, 943, 1204, 1691, 1763
MalI GATC 7 cut(s) 230, 451, 536, 1160, 1314, 1821, 1888
MboI GATC 7 cut(s) 228, 449, 534, 1158, 1312, 1819, 1886
MboII GAAGA 9 cut(s) 321, 325, 359, 380, 567, 575, 957, 1142, 1226
MfeI CAATTG 3 cut(s) 578, 1194, 1563
MhlI GDGCHC 2 cut(s) 834, 1120
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 1020
MnlI CCTC 8 cut(s) 240, 440, 559, 942, 966, 1219, 1280, 1630
Mph1103I ATGCAT 1 cut(s) 1311
MroXI GAANNNNTTC 3 cut(s) 286, 848, 1572
MseI TTAA 9 cut(s) 386, 675, 708, 1010, 1440, 1604, 1613, 1631, 1881
MslI CAYNNNNRTG 3 cut(s) 111, 985, 1499
MspA1I CMGCKG 1 cut(s) 1427
MspCI CTTAAG 1 cut(s) 1603
MspI CCGG 1 cut(s) 1090
MspR9I CCNGG 1 cut(s) 1452
MunI CAATTG 3 cut(s) 578, 1194, 1563
Mva1269I GAATGC 3 cut(s) 761, 848, 1561
MvaI CCWGG 1 cut(s) 1452
MwoI GCNNNNNNNGC 1 cut(s) 1849
NcoI CCATGG 1 cut(s) 1653
NdeII GATC 7 cut(s) 228, 449, 534, 1158, 1312, 1819, 1886
NlaIV GGNNCC 3 cut(s) 17, 644, 1044
NmuCI GTSAC 4 cut(s) 515, 568, 1204, 1691
NsbI TGCGCA 1 cut(s) 1667
NsiI ATGCAT 1 cut(s) 1311
NspI RCATGY 3 cut(s) 1261, 1302, 1939
PaeI GCATGC 1 cut(s) 1261
PceI AGGCCT 1 cut(s) 927
PctI GAATGC 3 cut(s) 761, 848, 1561
PdmI GAANNNNTTC 3 cut(s) 286, 848, 1572
PfeI GAWTC 7 cut(s) 175, 584, 729, 890, 1524, 1649, 1862
PflMI CCANNNNNTGG 1 cut(s) 1199
PinAI ACCGGT 1 cut(s) 1089
PkrI GCNGC 3 cut(s) 1472, 1665, 1813
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Ppu21I YACGTR 1 cut(s) 1368
PshBI ATTAAT 1 cut(s) 1440
Psp124BI GAGCTC 1 cut(s) 834
Psp1406I AACGTT 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 1450
PspGI CCWGG 1 cut(s) 1450
PspN4I GGNNCC 3 cut(s) 17, 644, 1044
PstNI CAGNNNCTG 1 cut(s) 1840
PvuII CAGCTG 1 cut(s) 1427
RsaI GTAC 3 cut(s) 644, 1592, 1828
RsaNI GTAC 3 cut(s) 643, 1591, 1827
RseI CAYNNNNRTG 3 cut(s) 111, 985, 1499
SacI GAGCTC 1 cut(s) 834
SalI GTCGAC 2 cut(s) 619, 1336
SaqAI TTAA 9 cut(s) 386, 675, 708, 1010, 1440, 1604, 1613, 1631, 1881
SatI GCNGC 3 cut(s) 1471, 1664, 1812
Sau3AI GATC 7 cut(s) 228, 449, 534, 1158, 1312, 1819, 1886
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 1452
SduI GDGCHC 2 cut(s) 834, 1120
SfaNI GCATC 5 cut(s) 64, 193, 199, 1296, 1823
SfcI CTRYAG 1 cut(s) 1262
SmiI ATTTAAAT 1 cut(s) 1614
SmiMI CAYNNNNRTG 3 cut(s) 111, 985, 1499
SmlI CTYRAG 1 cut(s) 1603
SmoI CTYRAG 1 cut(s) 1603
SnaBI TACGTA 1 cut(s) 1368
SpeI ACTAGT 1 cut(s) 1585
SphI GCATGC 1 cut(s) 1261
SseBI AGGCCT 1 cut(s) 927
SsiI CCGC 1 cut(s) 1405
SspMI CTAG 2 cut(s) 647, 1586
SstI GAGCTC 1 cut(s) 834
StuI AGGCCT 1 cut(s) 927
StyD4I CCNGG 1 cut(s) 1450
StyI CCWWGG 4 cut(s) 550, 806, 1653, 1913
SwaI ATTTAAAT 1 cut(s) 1614
TaaI ACNGT 4 cut(s) 515, 1397, 1413, 1697
TaiI ACGT 3 cut(s) 44, 386, 1370
TaqI TCGA 5 cut(s) 193, 620, 727, 745, 1337
TatI WGTACW 2 cut(s) 1590, 1826
TfiI GAWTC 7 cut(s) 175, 584, 729, 890, 1524, 1649, 1862
Tru1I TTAA 9 cut(s) 386, 675, 708, 1010, 1440, 1604, 1613, 1631, 1881
Tru9I TTAA 9 cut(s) 386, 675, 708, 1010, 1440, 1604, 1613, 1631, 1881
TscAI CASTG 1 cut(s) 945
TseFI GTSAC 4 cut(s) 515, 568, 1204, 1691
TseI GCWGC 3 cut(s) 1470, 1663, 1811
Tsp45I GTSAC 4 cut(s) 515, 568, 1204, 1691
TspDTI ATGAA 5 cut(s) 416, 432, 834, 1293, 1596
TspGWI ACGGA 1 cut(s) 1679
TspRI CASTG 1 cut(s) 945
Van91I CCANNNNNTGG 1 cut(s) 1199
Vha464I CTTAAG 1 cut(s) 1603
VspI ATTAAT 1 cut(s) 1440
XapI RAATTY 1 cut(s) 1615
XceI RCATGY 3 cut(s) 1261, 1302, 1939
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XmiI GTMKAC 2 cut(s) 620, 1337
XmnI GAANNNNTTC 3 cut(s) 286, 848, 1572
XspI CTAG 2 cut(s) 647, 1586
Zsp2I ATGCAT 1 cut(s) 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.