RchiOBHm_Chr6g0274421

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000110
Physical Location & Seq
Reverse (-)
35919612 .. 35924793
5182 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24617

Sequence Viewer

Length: 2730 bp
ATGGCTTCACCTGCAATAGACCTTCTGATCGGCAAAATAGTATCATTTCTTGAAAGTGAAGTCTCATTGCTAGAAGGAGTTCATGATGAGCTACACGAAGTCAAGCTTGAGTTATTAACCATGAAAGCCTTCTTGGAGGATGCAGAAAGGAAGGGAGCTCTGAGTGAAGTAGAGAAAACGTGGGTGGCAAATGTAAGAGACGTCTCCATTGATGTTGAAGATATCATTGATGAGTTTACGTACGACACAAACAAGCGAAGAAGTTGGGGTCCGTTCACAAGAGCCTTTTGGAAGACGCTTTGCCTCCCACAGAACATCTGGGAGAGGCATCGGATTGCCACCAAATTGCAGACGATCATAAAAACAATCAAAGATATTCCAGAGAGAAACCGGCGTTATGGTTCTGTGCGCATAGAAGGCAGTACTTCGCACCATGATGTGAACCGGATTAAAGTCTATGGCGAGTCGTCTCTTTTCTTGAAAGATGATGATCTGGTGGGGATCACAGATGCTAGAAGGAAGTTAGTTGGATGGTTGTTGTCTAGCCATTCTCAAAGAACTGTGATTTCAGTTGTAGGAATGGGGGGTTCGGGCAAGACGACCTTAGTTGCAAGCACCTTCAACAATCAAACTGTACAGCAACATTTTGGTTGCTACACGTGGATTACAGTCTCACAAAGTTATACCGTTGAAGATCTGTTTAGAGTCATGATCAATGAATTATTGGCAGCGGCACAAATGGATGTTCCTCAGAACTTGAGCAACATGAGTTACAGACATTTGGTGGAAATGCTAGTCCACTACTTGCAGCCACGGAGGTATATGATTGTCTTAGATGATGTGTGGGACACTAATCTTTGGAGATCCATAGATGTTGCACTTCCCAATGGAACTCATGGTAGCCGGATCATGCTTACAACTCGGAACAAAGACATAGCTTCTTTGGCATTTGGAGTCGAAAGTCATGTTCATCAGGTTGAACCTCTTAATACAAATGAGGCTTGGGATCTTTTCTCCAGAAGAGCATTCTCTGGTGGGAGTGACAAGTCTTGTCCACCAGAGCTTCAAATCATAGCTAGGGAGCTTGTAGGAAAATGTGAAGGCTTACCTCTAGGACTTGTGGCTTTGGGTTCTCTCATGTCAACCAAAAGATTTGTGTCCGAGTGGAAGAAAGTTTACAATAGCATGAGTTGGGAGCTCAGCAATAATCCGACACTTGAAGTAGTGAAGAGCATTTTGTTGCTAAGCTTCAATGATCTACCTTACCGACTCAAACACTGCTTCTTATATTTCTGCATTTTTCCTGAAGATTACACAATTAAGTGCAAAAGGCTAGTTCGGTTGTGGATAGCAGAGGGGTTTGTTGAACAAGTTAGAGGGGGTCAGCCAGAAGAGATAGCTGAGAGCTACCTAGCAGAGCTAACTTGCCGCTGTATGCTTCAAGTGGTTGAGAGGGAACCATCTGGAAAGGCAAAAAAATTTAAAATGCATGACCTTCTGCGAGAACTTGCCATTTCAATTTCAGAAGCAGAGAAGTTTTGTACTGTGTATAATGAGAAAGAAACAAATGAAGAGAGACAAGCTCCACGCCGCCTTTCAATACAAGGAAGCTCTGGAAAAGTACGAGCACACAAAGACATGACAAATGTACGCTCATTATTTGTCCTTGCTCCTAAGATGATGGCCTCTTCTTCTTCTTTGGAAAAAGTATTACCATCTGGTTTCAAACTGTTGAGGGTCTTGGATCTTAAATATGTTCCGATCCAGGAATTGCCAGATGAAATAATGAAGTGCTTTAACTTGACGAGTTTGAACTTGAAAGGGACAGAAGTAAGAAAGCTACCAAAACGCATAGGGAATCTTCAGAACTTGGAAACAATGGATATTAGGGACTCCAATATAAGGGAACTTCCAGTTGGAATTGTGAAGTTACAGAAGTTGCGACATCTTTTCATGTACCATTTCAATTATGGAGCTTACAAGTCTTTTAATAGCTTTCAAGGCACAAAAGCACCAGCAGGCATATGTAAGCTACAGAGTCTGCAAATTTTGGATTCAATCGAGGCAGGAAGTGAGTTGATCAAACAGCTTCAGCACATGACCCAACTCACTGCATTAGGCTTAGCGAATGTGAAGGAAGCCGATGAGATAGACTTATGCAAGTCAATCGAAAGCATGAAACTGATGGAATGCTTAACCGTCAAGACAAGTAGTGTGGATGAGGTGTTACGCATGGATGCATTGTTGTTGGCTCCTCCTCTGCTGAAAACACTTGTTTTAACTGGAAAGTTAAACAAGGTTCCGCTCTGGTTTGCTTCTCTTGAGAGCCTTACCGTCTTATATTTGCATTGGTCCAGATCAACAGAAGACTTTCTTCCTCACATTCATGCACTACCTAATTTGACCAAACTTTGGCTATGCAATGCATATGTAGGAAACCAGTTGCTCTTTCAAACTGGGTTCCAAAAGCTTTCTGGTTTGTACATAACCAATTTTCCTCAGTTGAATCTGATCACCATAGAGAAGGGGGTGATGCCAGCACTGAAGACTCTGGACATTTCTGAATGCATGGAGTTAAAGCGATTGCCTCGCGGAATCAAACTTCTGACATGTCTCCAGAAGTTGCATCTGCACAGGGTTCCCAATGAACTCGTGGAGCGCATGCGCCGAAAACGAGGTGTGGATCATTCAAAGGTTAAACACATCTCCGATATTCGTCTTTTCCACTAA

Protein Analysis

909

Amino Acids

103.74

Weight (kDa)

8.82

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 90 2.5e-23 Rx N-terminal domain
NB-ARC PF00931 172 - 344 1.2e-45 NB-ARC domain
nSTAND6 PF25201 172 - 280 3.7e-06 Novel STAND NTPase 6
WHD_DRP PF23559 433 - 504 2.7e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 550 - 878 8.2e-39 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
AatII GACGTC 1 cut(s) 204
Acc16I TGCGCA 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 19
AccB7I CCANNNNNTGG 1 cut(s) 2412
AccBSI CCGCTC 1 cut(s) 2305
AccII CGCG 1 cut(s) 2592
AciI CCGC 5 cut(s) 731, 1429, 1591, 2303, 2592
AclWI GGATC 7 cut(s) 509, 858, 914, 1014, 1752, 1756, 2691
AcsI RAATTY 2 cut(s) 1478, 2046
AcuI CTGAAG 4 cut(s) 1326, 1847, 2075, 2564
AcvI CACGTG 1 cut(s) 660
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 8 cut(s) 242, 424, 636, 1543, 1623, 1650, 1958, 2483
AfiI CCNNNNNNNGG 2 cut(s) 1902, 2412
AflIII ACRYGT 2 cut(s) 657, 2609
AjnI CCWGG 1 cut(s) 1764
AjuI GAANNNNNNNTTGG 4 cut(s) 116, 148, 1899, 1931
Alw21I GWGCWC 3 cut(s) 160, 1200, 1630
Alw26I GTCTC 7 cut(s) 67, 192, 208, 474, 676, 1570, 2618
AlwI GGATC 7 cut(s) 509, 858, 914, 1014, 1752, 1756, 2691
AlwNI CAGNNNCTG 1 cut(s) 2041
AoxI GGCC 1 cut(s) 1683
ApeKI GCWGC 2 cut(s) 728, 808
ApoI RAATTY 2 cut(s) 1478, 2046
Asp700I GAANNNNTTC 3 cut(s) 78, 128, 2370
AspLEI GCGC 3 cut(s) 411, 2661, 2667
AspS9I GGNCC 2 cut(s) 269, 2352
AsuHPI GGTGA 2 cut(s) 2506, 2542
AvaII GGWCC 2 cut(s) 269, 2352
BanII GRGCYC 2 cut(s) 160, 1200
BarI GAAGNNNNNNTAC 2 cut(s) 1160, 1192
BauI CACGAG 1 cut(s) 2651
BbrPI CACGTG 1 cut(s) 660
BbsI GAAGAC 3 cut(s) 299, 2373, 2552
Bbv12I GWGCWC 3 cut(s) 160, 1200, 1630
BbvI GCAGC 2 cut(s) 740, 820
BccI CCATC 5 cut(s) 525, 1468, 1675, 1723, 2179
BcgI CGANNNNNNTGC 2 cut(s) 2149, 2183
BciT130I CCWGG 1 cut(s) 1766
BclI TGATCA 3 cut(s) 711, 2079, 2511
BcoDI GTCTC 7 cut(s) 67, 192, 208, 474, 676, 1570, 2618
BfaI CTAG 8 cut(s) 71, 513, 543, 794, 1077, 1112, 1334, 1412
BfmI CTRYAG 1 cut(s) 2033
BfuAI ACCTGC 1 cut(s) 19
BglII AGATCT 1 cut(s) 694
BisI GCNGC 5 cut(s) 729, 732, 809, 1429, 1591
BlpI GCTNAGC 3 cut(s) 1199, 1244, 2122
BlsI GCNGC 5 cut(s) 730, 733, 810, 1430, 1592
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 1 cut(s) 1766
Bme18I GGWCC 2 cut(s) 269, 2352
BmgT120I GGNCC 2 cut(s) 269, 2352
BmiI GGNNCC 6 cut(s) 270, 1458, 2253, 2301, 2462, 2640
BmrFI CCNGG 1 cut(s) 1766
BmrI ACTGGG 1 cut(s) 2466
BmsI GCATC 6 cut(s) 130, 337, 499, 2227, 2523, 2635
BmuI ACTGGG 1 cut(s) 2466
BpiI GAAGAC 3 cut(s) 299, 2373, 2552
BplI GAGNNNNNCTC 2 cut(s) 1567, 1599
BpmI CTGGAG 2 cut(s) 1000, 2600
Bpu1102I GCTNAGC 3 cut(s) 1199, 1244, 2122
BpuEI CTTGAG 3 cut(s) 128, 778, 2342
BsaAI YACGTR 2 cut(s) 240, 660
BsaBI GATNNNNATC 1 cut(s) 489
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 812
BsaWI WCCGGW 1 cut(s) 444
Bsc4I CCNNNNNNNGG 2 cut(s) 1902, 2412
Bse118I RCCGGY 1 cut(s) 390
Bse1I ACTGG 4 cut(s) 1913, 2287, 2440, 2461
Bse3DI GCAATG 2 cut(s) 65, 2428
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 1766
BseDI CCNNGG 1 cut(s) 812
BseGI GGATG 5 cut(s) 145, 536, 748, 2224, 2242
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 2 cut(s) 1902, 2412
BseMI GCAATG 2 cut(s) 65, 2428
BseMII CTCAG 5 cut(s) 152, 764, 1213, 1392, 2513
BseNI ACTGG 4 cut(s) 1913, 2287, 2440, 2461
BseRI GAGGAG 2 cut(s) 2244, 2247
BseXI GCAGC 2 cut(s) 740, 820
BsgI GTGCAG 1 cut(s) 2615
Bsh1236I CGCG 1 cut(s) 2592
BshFI GGCC 1 cut(s) 1685
BsiHKAI GWGCWC 3 cut(s) 160, 1200, 1630
BsiSI CCGG 3 cut(s) 391, 445, 904
BsiWI CGTACG 1 cut(s) 240
BslFI GGGAC 3 cut(s) 860, 1837, 1904
BslI CCNNNNNNNGG 2 cut(s) 1902, 2412
BsmAI GTCTC 7 cut(s) 67, 192, 208, 474, 676, 1570, 2618
BsmBI CGTCTC 3 cut(s) 192, 208, 474
BsmFI GGGAC 3 cut(s) 860, 1837, 1904
BsmI GAATGC 3 cut(s) 1025, 2195, 2570
BsnI GGCC 1 cut(s) 1685
Bsp1286I GDGCHC 3 cut(s) 160, 1200, 1630
Bsp1407I TGTACA 2 cut(s) 634, 2481
Bsp1720I GCTNAGC 3 cut(s) 1199, 1244, 2122
BspACI CCGC 5 cut(s) 731, 1429, 1591, 2303, 2592
BspANI GGCC 1 cut(s) 1685
BspCNI CTCAG 5 cut(s) 153, 763, 1212, 1393, 2512
BspFNI CGCG 1 cut(s) 2592
BspHI TCATGA 2 cut(s) 82, 708
BspLI GGNNCC 6 cut(s) 270, 1458, 2253, 2301, 2462, 2640
BspMI ACCTGC 1 cut(s) 19
BspPI GGATC 7 cut(s) 509, 858, 914, 1014, 1752, 1756, 2691
BspQI GCTCTTC 2 cut(s) 1015, 1223
BsrBI CCGCTC 1 cut(s) 2305
BsrDI GCAATG 2 cut(s) 65, 2428
BsrFI RCCGGY 1 cut(s) 390
BsrGI TGTACA 2 cut(s) 634, 2481
BsrI ACTGG 4 cut(s) 1913, 2287, 2440, 2461
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 812
BssNI GRCGYC 1 cut(s) 201
BssSI CACGAG 1 cut(s) 2651
Bst2BI CACGAG 1 cut(s) 2651
Bst2UI CCWGG 1 cut(s) 1766
Bst4CI ACNGT 8 cut(s) 562, 634, 670, 688, 1546, 1731, 2200, 2335
Bst6I CTCTTC 5 cut(s) 1015, 1223, 1386, 1566, 1693
BstACI GRCGYC 1 cut(s) 201
BstAUI TGTACA 2 cut(s) 634, 2481
BstBAI YACGTR 2 cut(s) 240, 660
BstC8I GCNNGC 4 cut(s) 613, 2020, 2538, 2663
BstDSI CCRYGG 1 cut(s) 812
BstF5I GGATG 5 cut(s) 145, 536, 748, 2224, 2242
BstFNI CGCG 1 cut(s) 2592
BstHHI GCGC 3 cut(s) 411, 2661, 2667
BstMAI GTCTC 7 cut(s) 67, 192, 208, 474, 676, 1570, 2618
BstMWI GCNNNNNNNGC 4 cut(s) 11, 417, 944, 2001
BstNI CCWGG 1 cut(s) 1766
BstNSI RCATGY 2 cut(s) 2613, 2665
BstSCI CCNGG 1 cut(s) 1764
BstSFI CTRYAG 1 cut(s) 2033
BstSNI TACGTA 1 cut(s) 240
BstUI CGCG 1 cut(s) 2592
BstV1I GCAGC 2 cut(s) 740, 820
BstV2I GAAGAC 3 cut(s) 299, 2373, 2552
BstX2I RGATCY 4 cut(s) 694, 863, 1006, 1744
BstYI RGATCY 4 cut(s) 694, 863, 1006, 1744
BsuRI GGCC 1 cut(s) 1685
BtgI CCRYGG 1 cut(s) 812
BtsCI GGATG 5 cut(s) 145, 536, 748, 2224, 2242
BtsI GCAGTG 2 cut(s) 1276, 2109
BtsIMutI CAGTG 3 cut(s) 1276, 2109, 2540
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 4 cut(s) 613, 2020, 2538, 2663
CaiI CAGNNNCTG 1 cut(s) 2041
CciI TCATGA 2 cut(s) 82, 708
CfoI GCGC 3 cut(s) 411, 2661, 2667
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 269, 2352
CseI GACGC 1 cut(s) 304
Csp6I GTAC 8 cut(s) 241, 423, 635, 1542, 1622, 1649, 1957, 2482
CspCI CAANNNNNGTGG 2 cut(s) 2196, 2231
CviQI GTAC 8 cut(s) 241, 423, 635, 1542, 1622, 1649, 1957, 2482
DraI TTTAAA 1 cut(s) 1483
Eam1104I CTCTTC 5 cut(s) 1015, 1223, 1386, 1566, 1693
EarI CTCTTC 5 cut(s) 1015, 1223, 1386, 1566, 1693
Ecl136II GAGCTC 2 cut(s) 158, 1198
Eco105I TACGTA 1 cut(s) 240
Eco24I GRGCYC 2 cut(s) 160, 1200
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 269, 2352
Eco53kI GAGCTC 2 cut(s) 158, 1198
Eco57I CTGAAG 4 cut(s) 1326, 1847, 2075, 2564
Eco72I CACGTG 1 cut(s) 660
EcoICRI GAGCTC 2 cut(s) 158, 1198
EcoRII CCWGG 1 cut(s) 1764
EcoRV GATATC 1 cut(s) 223
EcoT22I ATGCAT 4 cut(s) 1491, 2242, 2428, 2570
EcoT38I GRGCYC 2 cut(s) 160, 1200
Esp3I CGTCTC 3 cut(s) 192, 208, 474
FalI AAGNNNNNCTT 6 cut(s) 90, 122, 587, 619, 2358, 2390
FaqI GGGAC 3 cut(s) 860, 1837, 1904
FauNDI CATATG 2 cut(s) 2024, 2428
FbaI TGATCA 3 cut(s) 711, 2079, 2511
Fnu4HI GCNGC 5 cut(s) 729, 732, 809, 1429, 1591
FokI GGATG 5 cut(s) 152, 543, 755, 2231, 2249
FriOI GRGCYC 2 cut(s) 160, 1200
Fsp4HI GCNGC 5 cut(s) 729, 732, 809, 1429, 1591
FspAI RTGCGCAY 1 cut(s) 410
FspBI CTAG 8 cut(s) 71, 513, 543, 794, 1077, 1112, 1334, 1412
FspI TGCGCA 1 cut(s) 410
GlaI GCGC 3 cut(s) 410, 2660, 2666
GluI GCNGC 5 cut(s) 729, 732, 809, 1429, 1591
GsuI CTGGAG 2 cut(s) 1000, 2600
HaeIII GGCC 1 cut(s) 1685
HapII CCGG 3 cut(s) 391, 445, 904
HgaI GACGC 1 cut(s) 304
HhaI GCGC 3 cut(s) 411, 2661, 2667
Hin1I GRCGYC 1 cut(s) 201
Hin6I GCGC 3 cut(s) 409, 2659, 2665
HinP1I GCGC 3 cut(s) 409, 2659, 2665
HincII GTYRAC 1 cut(s) 1143
HindII GTYRAC 1 cut(s) 1143
HindIII AAGCTT 3 cut(s) 104, 1246, 2468
HpaII CCGG 3 cut(s) 391, 445, 904
HphI GGTGA 2 cut(s) 2506, 2542
Hpy166II GTNNAC 7 cut(s) 237, 276, 442, 799, 1055, 1143, 1177
Hpy8I GTNNAC 7 cut(s) 237, 276, 442, 799, 1055, 1143, 1177
HpyCH4III ACNGT 8 cut(s) 562, 634, 670, 688, 1546, 1731, 2200, 2335
HpyCH4IV ACGT 4 cut(s) 179, 201, 239, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 417, 944, 2001
HpySE526I ACGT 4 cut(s) 179, 201, 239, 659
Hsp92I GRCGYC 1 cut(s) 201
HspAI GCGC 3 cut(s) 409, 2659, 2665
Ksp22I TGATCA 3 cut(s) 711, 2079, 2511
LguI GCTCTTC 2 cut(s) 1015, 1223
LmnI GCTCC 8 cut(s) 155, 1081, 1195, 1588, 1675, 1973, 2257, 2656
Lsp1109I GCAGC 2 cut(s) 740, 820
LweI GCATC 6 cut(s) 130, 337, 499, 2227, 2523, 2635
MaeI CTAG 8 cut(s) 71, 513, 543, 794, 1077, 1112, 1334, 1412
MaeII ACGT 4 cut(s) 179, 201, 239, 659
MaeIII GTNAC 4 cut(s) 770, 1040, 1929, 2226
MbiI CCGCTC 1 cut(s) 2305
MflI RGATCY 4 cut(s) 694, 863, 1006, 1744
MhlI GDGCHC 3 cut(s) 160, 1200, 1630
MlyI GAGTC 7 cut(s) 473, 714, 963, 1263, 1886, 2047, 2542
MmeI TCCRAC 3 cut(s) 508, 1235, 1897
Mph1103I ATGCAT 4 cut(s) 1491, 2242, 2428, 2570
MroXI GAANNNNTTC 3 cut(s) 78, 128, 2370
MslI CAYNNNNRTG 2 cut(s) 435, 2385
MspA1I CMGCKG 2 cut(s) 731, 1431
MspI CCGG 3 cut(s) 391, 445, 904
MspR9I CCNGG 1 cut(s) 1766
Mva1269I GAATGC 3 cut(s) 1025, 2195, 2570
MvaI CCWGG 1 cut(s) 1766
MvnI CGCG 1 cut(s) 2592
MwoI GCNNNNNNNGC 4 cut(s) 11, 417, 944, 2001
NdeI CATATG 2 cut(s) 2024, 2428
NlaIV GGNNCC 6 cut(s) 270, 1458, 2253, 2301, 2462, 2640
NmuCI GTSAC 1 cut(s) 1040
NsbI TGCGCA 1 cut(s) 410
NsiI ATGCAT 4 cut(s) 1491, 2242, 2428, 2570
NspI RCATGY 2 cut(s) 2613, 2665
PaeI GCATGC 1 cut(s) 2665
PagI TCATGA 2 cut(s) 82, 708
PaqCI CACCTGC 1 cut(s) 19
PciI ACATGT 1 cut(s) 2609
PciSI GCTCTTC 2 cut(s) 1015, 1223
PcsI WCGNNNNNNNCGW 1 cut(s) 596
PctI GAATGC 3 cut(s) 1025, 2195, 2570
PdmI GAANNNNTTC 3 cut(s) 78, 128, 2370
PfeI GAWTC 4 cut(s) 1858, 2054, 2506, 2595
Pfl23II CGTACG 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 2412
PfoI TCCNGGA 1 cut(s) 1764
PkrI GCNGC 5 cut(s) 730, 733, 810, 1430, 1592
PleI GAGTC 7 cut(s) 472, 713, 962, 1263, 1886, 2046, 2542
PmaCI CACGTG 1 cut(s) 660
PmlI CACGTG 1 cut(s) 660
PpsI GAGTC 7 cut(s) 472, 713, 962, 1263, 1886, 2046, 2542
Ppu21I YACGTR 2 cut(s) 240, 660
PscI ACATGT 1 cut(s) 2609
Psp124BI GAGCTC 2 cut(s) 160, 1200
Psp6I CCWGG 1 cut(s) 1764
PspCI CACGTG 1 cut(s) 660
PspGI CCWGG 1 cut(s) 1764
PspLI CGTACG 1 cut(s) 240
PspN4I GGNNCC 6 cut(s) 270, 1458, 2253, 2301, 2462, 2640
PspPI GGNCC 2 cut(s) 269, 2352
PstNI CAGNNNCTG 1 cut(s) 2041
PsuI RGATCY 4 cut(s) 694, 863, 1006, 1744
RsaI GTAC 8 cut(s) 242, 424, 636, 1543, 1623, 1650, 1958, 2483
RsaNI GTAC 8 cut(s) 241, 423, 635, 1542, 1622, 1649, 1957, 2482
RseI CAYNNNNRTG 2 cut(s) 435, 2385
SacI GAGCTC 2 cut(s) 160, 1200
SapI GCTCTTC 2 cut(s) 1015, 1223
SatI GCNGC 5 cut(s) 729, 732, 809, 1429, 1591
Sau96I GGNCC 2 cut(s) 269, 2352
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 7 cut(s) 473, 714, 963, 1263, 1886, 2047, 2542
ScrFI CCNGG 1 cut(s) 1766
SduI GDGCHC 3 cut(s) 160, 1200, 1630
SfaNI GCATC 6 cut(s) 130, 337, 499, 2227, 2523, 2635
SfcI CTRYAG 1 cut(s) 2033
SinI GGWCC 2 cut(s) 269, 2352
SmiMI CAYNNNNRTG 2 cut(s) 435, 2385
SmlI CTYRAG 3 cut(s) 107, 757, 2321
SmoI CTYRAG 3 cut(s) 107, 757, 2321
SnaBI TACGTA 1 cut(s) 240
SphI GCATGC 1 cut(s) 2665
SsiI CCGC 5 cut(s) 731, 1429, 1591, 2303, 2592
SspMI CTAG 8 cut(s) 71, 513, 543, 794, 1077, 1112, 1334, 1412
SstI GAGCTC 2 cut(s) 160, 1200
StyD4I CCNGG 1 cut(s) 1764
TaaI ACNGT 8 cut(s) 562, 634, 670, 688, 1546, 1731, 2200, 2335
TaiI ACGT 4 cut(s) 182, 204, 242, 662
TaqI TCGA 3 cut(s) 957, 2061, 2169
TatI WGTACW 4 cut(s) 422, 634, 1541, 2481
TauI GCSGC 3 cut(s) 734, 1431, 1593
TfiI GAWTC 4 cut(s) 1858, 2054, 2506, 2595
TscAI CASTG 3 cut(s) 1283, 2116, 2547
TseFI GTSAC 1 cut(s) 1040
TseI GCWGC 2 cut(s) 728, 808
Tsp45I GTSAC 1 cut(s) 1040
TspGWI ACGGA 2 cut(s) 261, 829
TspRI CASTG 3 cut(s) 1283, 2116, 2547
Van91I CCANNNNNTGG 1 cut(s) 2412
VpaK11BI GGWCC 2 cut(s) 269, 2352
XapI RAATTY 2 cut(s) 1478, 2046
XceI RCATGY 2 cut(s) 2613, 2665
XcmI CCANNNNNNNNNTGG 4 cut(s) 315, 1967, 2471, 2650
XmnI GAANNNNTTC 3 cut(s) 78, 128, 2370
XspI CTAG 8 cut(s) 71, 513, 543, 794, 1077, 1112, 1334, 1412
ZraI GACGTC 1 cut(s) 202
ZrmI AGTACT 1 cut(s) 424
Zsp2I ATGCAT 4 cut(s) 1491, 2242, 2428, 2570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.