MD06G1152500.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000110
Physical Location & Seq
Forward (+)
29597217 .. 29598778
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1152500.v1.1.491

Sequence Viewer

Length: 1470 bp
ATGCTAGAACCAATGAGCAGCATCTTGTTACTTAGTTTCAACAATTTGCCCAACCGGTTGAAGCCTTGTTTCCTATATTGTGCCCTTTTCCCAGAAGATTATCTCATCAAAAGAAAAAAGTTGATCAGGTTGTGGATAGCTGAAGGGTTTATTGAACCAATTGATGGGGTCACACCAGAAGAAGTTGCAGAGGGCTATCTTGCTTTGTCGACATCAAAAAAGGAAAAGTTTGGTGCTACGTATGTTGGCAGAGAAATAATAGATAAAGCTGAAATCCGCCGATTGTCAATTCAAACAACTGAAAGAGAAATTAATTCTTGCACAGGAATGTCAGAGCTTCGCTCCTTTCTTGTCTTTGGCGCGTTAAAGAAATTGCCTTCTGGATTCAAGTTGTTGAGAGTTCTAGATGTGCAGGATGCTCCAATTGATAGATTTCCGGATGAACTAGTGTACTCGTTCAACTTAAGATATTTAAATTTGAAGAGAACTTTAATTGACGAGCTTCCAGAATCCATCGGACGGCTTCTCAACCTTCAAACCTTGAACATCTGTCACGGTAAGATAAGGGCACTTCCAAAAGCAATCTCCAAGTTAGTAAACCTACGCCATCTAATGATGTATTGTCACACTGGTGATTGGGCTGCCCTTAGATGTGTCAATGGGACAAAAACAGCATCCGATCTAACTAAATTACAGAAACTACAAGTTTTGCAATCTGTTGAATCAGAAGGAAAGATTATTAAGGGCATCGGGAATATGACCCAACTTACAAGCCTCGGTATTACAAATGTGAAAGCAAGTGACGAGATGGACCTATGTGACTCCCTTCAAAAGTTAGAGCTCCTCCACTGTTTGTTTTTTATGGCAAGTGATGAAGAGGAGTTTCTTCGAGTTAATGCACTACGTTCGCCTCCTCCAGACCTTCGAAAGGTTATTTTGGGTGGAAAACTAGAAAAGGTACCTCTTTGGTTTGGTTCACTCCATAACCTGACTTGTATGGATCTAATTTGGTCTAGACTTGAAGAAGATGTGCTACCTCACATTCAACCATTGCCGAATCTTGAAATGCTTCACCTAAGTAATGCATATGTTGGCGAAAAATTGTGTTTCTCTAGAGGCTTCATAAAGCTTAAGCATTTGATGTTGCGCAGCTTCCTGGTATTGAATAGTATAGCTATAGAGAAAGGGGCGATGCCAAATCTCCAGGTCTTAGAAATTGGGAACTGCCTGGAGTTAAAGGCATTGCCGCAGGGCATTGAGTTCCTTGCTAACGTAGAACGCTTGATTCTGTATTTTGTTCCAAAGCAACTTATAGAGTCCGTAAGAGGCGGCATGGATCATCCAAAGGTACAACATATTCCTGAAATCCACCTGTCTTATGAGAGAGAAAATATGAAGTGTCATGAAAGCTTTTCCGGTATTCACTCTCATAAAAGGTACGCACACTTTTATCCTTGCATAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

490

Amino Acids

55.77

Weight (kDa)

8.44

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 29 - 67 3.1e-11 Disease resistance protein Winged helix domain
LRR_14 PF23598 113 - 408 9.1e-42 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1148
Acc65I GGTACC 1 cut(s) 958
AccB1I GGYRCC 1 cut(s) 958
AccB7I CCANNNNNTGG 1 cut(s) 164
AccI GTMKAC 1 cut(s) 209
AccII CGCG 1 cut(s) 362
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 3 cut(s) 277, 1247, 1329
AclWI GGATC 2 cut(s) 1008, 1344
AcsI RAATTY 2 cut(s) 475, 1464
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 4 cut(s) 452, 960, 1350, 1439
AfiI CCNNNNNNNGG 3 cut(s) 164, 519, 928
AflII CTTAAG 2 cut(s) 463, 1130
AgeI ACCGGT 1 cut(s) 54
AhlI ACTAGT 1 cut(s) 445
AjnI CCWGG 3 cut(s) 1155, 1203, 1227
AleI CACNNNNGTG 1 cut(s) 630
AluBI AGCT 9 cut(s) 140, 269, 337, 502, 841, 1129, 1152, 1175, 1410
AluI AGCT 9 cut(s) 140, 269, 337, 502, 841, 1129, 1152, 1175, 1410
Alw21I GWGCWC 1 cut(s) 843
AlwI GGATC 2 cut(s) 1008, 1344
Aor13HI TCCGGA 1 cut(s) 436
ApeKI GCWGC 3 cut(s) 18, 641, 1149
ApoI RAATTY 2 cut(s) 475, 1464
AseI ATTAAT 1 cut(s) 312
AsiGI ACCGGT 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 1068
Asp718I GGTACC 1 cut(s) 958
AspLEI GCGC 2 cut(s) 362, 1149
AspS9I GGNCC 1 cut(s) 811
AsuHPI GGTGA 2 cut(s) 644, 1064
AsuII TTCGAA 1 cut(s) 925
AvaII GGWCC 1 cut(s) 811
BaeGI GKGCMC 2 cut(s) 85, 571
BanI GGYRCC 1 cut(s) 958
BanII GRGCYC 1 cut(s) 843
BarI GAAGNNNNNNTAC 2 cut(s) 1017, 1049
Bbv12I GWGCWC 1 cut(s) 843
BbvI GCAGC 3 cut(s) 30, 628, 1161
BccI CCATC 4 cut(s) 158, 521, 615, 802
BceAI ACGGC 1 cut(s) 536
BcgI CGANNNNNNTGC 2 cut(s) 888, 922
BciT130I CCWGG 3 cut(s) 1157, 1205, 1229
BclI TGATCA 1 cut(s) 123
BcuI ACTAGT 1 cut(s) 445
BfaI CTAG 6 cut(s) 5, 404, 446, 950, 1014, 1113
BfmI CTRYAG 1 cut(s) 1176
BfrI CTTAAG 2 cut(s) 463, 1130
BisI GCNGC 5 cut(s) 19, 642, 1150, 1247, 1330
BlsI GCNGC 5 cut(s) 20, 643, 1151, 1248, 1331
Bme1390I CCNGG 3 cut(s) 1157, 1205, 1229
Bme18I GGWCC 1 cut(s) 811
BmgT120I GGNCC 1 cut(s) 811
BmiI GGNNCC 1 cut(s) 960
BmrFI CCNGG 3 cut(s) 1157, 1205, 1229
BmsI GCATC 5 cut(s) 30, 406, 683, 756, 1182
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 3 cut(s) 900, 1187, 1250
Bpu14I TTCGAA 1 cut(s) 925
BsaAI YACGTR 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 775
BsaWI WCCGGW 3 cut(s) 54, 436, 1415
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 519, 928
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 634
Bse3DI GCAATG 2 cut(s) 1049, 1241
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 3 cut(s) 1157, 1205, 1229
BseDI CCNNGG 1 cut(s) 775
BseGI GGATG 4 cut(s) 421, 445, 674, 1339
BseLI CCNNNNNNNGG 3 cut(s) 164, 519, 928
BseMI GCAATG 2 cut(s) 1049, 1241
BseNI ACTGG 1 cut(s) 634
BseRI GAGGAG 3 cut(s) 833, 893, 903
BseSI GKGCMC 2 cut(s) 85, 571
BseXI GCAGC 3 cut(s) 30, 628, 1161
BsgI GTGCAG 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 958
BshTI ACCGGT 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 843
BsiSI CCGG 3 cut(s) 55, 437, 1416
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 3 cut(s) 164, 519, 928
BsmFI GGGAC 1 cut(s) 676
Bsp119I TTCGAA 1 cut(s) 925
Bsp1286I GDGCHC 3 cut(s) 85, 571, 843
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 4 cut(s) 123, 679, 1000, 1336
BspACI CCGC 3 cut(s) 277, 1247, 1329
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 1 cut(s) 362
BspHI TCATGA 1 cut(s) 1402
BspLI GGNNCC 1 cut(s) 960
BspPI GGATC 2 cut(s) 1008, 1344
BspT104I TTCGAA 1 cut(s) 925
BspT107I GGYRCC 1 cut(s) 958
BspTI CTTAAG 2 cut(s) 463, 1130
BsrDI GCAATG 2 cut(s) 1049, 1241
BsrFI RCCGGY 1 cut(s) 54
BsrI ACTGG 1 cut(s) 634
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 775
BssMI GATC 4 cut(s) 123, 679, 1000, 1336
Bst2UI CCWGG 3 cut(s) 1157, 1205, 1229
Bst4CI ACNGT 2 cut(s) 557, 851
Bst6I CTCTTC 2 cut(s) 476, 870
BstAFI CTTAAG 2 cut(s) 463, 1130
BstBAI YACGTR 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 925
BstDEI CTNAG 4 cut(s) 32, 647, 1076, 1210
BstENI CCTNNNNNAGG 1 cut(s) 926
BstF5I GGATG 4 cut(s) 421, 445, 674, 1339
BstFNI CGCG 1 cut(s) 362
BstHHI GCGC 2 cut(s) 362, 1149
BstKTI GATC 4 cut(s) 126, 682, 1003, 1339
BstMBI GATC 4 cut(s) 123, 679, 1000, 1336
BstNI CCWGG 3 cut(s) 1157, 1205, 1229
BstSCI CCNGG 3 cut(s) 1155, 1203, 1227
BstSFI CTRYAG 1 cut(s) 1176
BstSLI GKGCMC 2 cut(s) 85, 571
BstSNI TACGTA 1 cut(s) 240
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 3 cut(s) 30, 628, 1161
BstX2I RGATCY 1 cut(s) 1000
BstYI RGATCY 1 cut(s) 1000
BtgZI GCGATG 1 cut(s) 1205
BtsCI GGATG 4 cut(s) 421, 445, 674, 1339
BtsIMutI CAGTG 2 cut(s) 627, 847
CciI TCATGA 1 cut(s) 1402
CfoI GCGC 2 cut(s) 362, 1149
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 811
Csp6I GTAC 4 cut(s) 451, 959, 1349, 1438
CspAI ACCGGT 1 cut(s) 54
CviAII CATG 2 cut(s) 1333, 1403
CviQI GTAC 4 cut(s) 451, 959, 1349, 1438
DdeI CTNAG 4 cut(s) 32, 647, 1076, 1210
DpnI GATC 4 cut(s) 125, 681, 1002, 1338
DpnII GATC 4 cut(s) 123, 679, 1000, 1336
DraI TTTAAA 1 cut(s) 474
Eam1104I CTCTTC 2 cut(s) 476, 870
EarI CTCTTC 2 cut(s) 476, 870
EciI GGCGGA 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 841
Eco105I TACGTA 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 1 cut(s) 811
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 841
EcoNI CCTNNNNNAGG 1 cut(s) 926
EcoRII CCWGG 3 cut(s) 1155, 1203, 1227
EcoT22I ATGCAT 1 cut(s) 1087
EcoT38I GRGCYC 1 cut(s) 843
FaeI CATG 2 cut(s) 1336, 1406
FaqI GGGAC 1 cut(s) 676
FatI CATG 2 cut(s) 1332, 1402
FauNDI CATATG 1 cut(s) 1087
FbaI TGATCA 1 cut(s) 123
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 5 cut(s) 19, 642, 1150, 1247, 1330
FokI GGATG 4 cut(s) 428, 452, 661, 1326
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 5 cut(s) 19, 642, 1150, 1247, 1330
FspBI CTAG 6 cut(s) 5, 404, 446, 950, 1014, 1113
FspI TGCGCA 1 cut(s) 1148
GlaI GCGC 2 cut(s) 361, 1148
GluI GCNGC 5 cut(s) 19, 642, 1150, 1247, 1330
GsuI CTGGAG 3 cut(s) 900, 1187, 1250
HapII CCGG 3 cut(s) 55, 437, 1416
HhaI GCGC 2 cut(s) 362, 1149
Hin1II CATG 2 cut(s) 1336, 1406
Hin6I GCGC 2 cut(s) 360, 1147
HinP1I GCGC 2 cut(s) 360, 1147
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 2 cut(s) 1127, 1408
HinfI GANTC 7 cut(s) 384, 509, 722, 821, 1057, 1285, 1316
HpaII CCGG 3 cut(s) 55, 437, 1416
HphI GGTGA 2 cut(s) 644, 1064
Hpy166II GTNNAC 4 cut(s) 210, 451, 598, 977
Hpy188I TCNGA 4 cut(s) 334, 518, 679, 727
Hpy8I GTNNAC 4 cut(s) 210, 451, 598, 977
HpyAV CCTTC 6 cut(s) 137, 387, 542, 722, 836, 932
HpyCH4III ACNGT 2 cut(s) 557, 851
HpyCH4IV ACGT 3 cut(s) 239, 904, 1272
HpyCH4V TGCA 7 cut(s) 188, 321, 412, 712, 899, 1085, 1458
HpyF3I CTNAG 4 cut(s) 32, 647, 1076, 1210
HpySE526I ACGT 3 cut(s) 239, 904, 1272
Hsp92II CATG 2 cut(s) 1336, 1406
HspAI GCGC 2 cut(s) 360, 1147
Kpn2I TCCGGA 1 cut(s) 436
KpnI GGTACC 1 cut(s) 962
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 4 cut(s) 123, 679, 1000, 1336
LmnI GCTCC 3 cut(s) 347, 424, 846
Lsp1109I GCAGC 3 cut(s) 30, 628, 1161
LweI GCATC 5 cut(s) 30, 406, 683, 756, 1182
MaeI CTAG 6 cut(s) 5, 404, 446, 950, 1014, 1113
MaeII ACGT 3 cut(s) 239, 904, 1272
MaeIII GTNAC 6 cut(s) 27, 169, 551, 623, 800, 818
MalI GATC 4 cut(s) 125, 681, 1002, 1338
MboI GATC 4 cut(s) 123, 679, 1000, 1336
MboII GAAGA 7 cut(s) 107, 191, 493, 878, 887, 1034, 1037
MfeI CAATTG 2 cut(s) 159, 423
MflI RGATCY 1 cut(s) 1000
MhlI GDGCHC 3 cut(s) 85, 571, 843
MlyI GAGTC 2 cut(s) 815, 1325
Mph1103I ATGCAT 1 cut(s) 1087
MroI TCCGGA 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 1068
MseI TTAA 9 cut(s) 312, 365, 464, 473, 491, 741, 894, 1131, 1235
MslI CAYNNNNRTG 2 cut(s) 326, 630
MspCI CTTAAG 2 cut(s) 463, 1130
MspI CCGG 3 cut(s) 55, 437, 1416
MspR9I CCNGG 3 cut(s) 1157, 1205, 1229
MunI CAATTG 2 cut(s) 159, 423
MvaI CCWGG 3 cut(s) 1157, 1205, 1229
MvnI CGCG 1 cut(s) 362
NdeI CATATG 1 cut(s) 1087
NdeII GATC 4 cut(s) 123, 679, 1000, 1336
NlaIII CATG 2 cut(s) 1336, 1406
NlaIV GGNNCC 1 cut(s) 960
NmuCI GTSAC 5 cut(s) 169, 551, 623, 800, 818
NsbI TGCGCA 1 cut(s) 1148
NsiI ATGCAT 1 cut(s) 1087
NspV TTCGAA 1 cut(s) 925
OliI CACNNNNGTG 1 cut(s) 630
PagI TCATGA 1 cut(s) 1402
PdmI GAANNNNTTC 1 cut(s) 1068
PfeI GAWTC 5 cut(s) 384, 509, 722, 1057, 1285
PflMI CCANNNNNTGG 1 cut(s) 164
PinAI ACCGGT 1 cut(s) 54
PkrI GCNGC 5 cut(s) 20, 643, 1151, 1248, 1331
PleI GAGTC 2 cut(s) 815, 1324
PpsI GAGTC 2 cut(s) 815, 1324
Ppu21I YACGTR 1 cut(s) 240
PshBI ATTAAT 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 843
Psp6I CCWGG 3 cut(s) 1155, 1203, 1227
PspGI CCWGG 3 cut(s) 1155, 1203, 1227
PspN4I GGNNCC 1 cut(s) 960
PspPI GGNCC 1 cut(s) 811
PsuI RGATCY 1 cut(s) 1000
RsaI GTAC 4 cut(s) 452, 960, 1350, 1439
RsaNI GTAC 4 cut(s) 451, 959, 1349, 1438
RseI CAYNNNNRTG 2 cut(s) 326, 630
SacI GAGCTC 1 cut(s) 843
SalI GTCGAC 1 cut(s) 208
SaqAI TTAA 9 cut(s) 312, 365, 464, 473, 491, 741, 894, 1131, 1235
SatI GCNGC 5 cut(s) 19, 642, 1150, 1247, 1330
Sau3AI GATC 4 cut(s) 123, 679, 1000, 1336
Sau96I GGNCC 1 cut(s) 811
SchI GAGTC 2 cut(s) 815, 1325
ScrFI CCNGG 3 cut(s) 1157, 1205, 1229
SduI GDGCHC 3 cut(s) 85, 571, 843
SfaNI GCATC 5 cut(s) 30, 406, 683, 756, 1182
SfcI CTRYAG 1 cut(s) 1176
SfuI TTCGAA 1 cut(s) 925
SinI GGWCC 1 cut(s) 811
SmiI ATTTAAAT 1 cut(s) 474
SmiMI CAYNNNNRTG 2 cut(s) 326, 630
SmlI CTYRAG 2 cut(s) 463, 1130
SmoI CTYRAG 2 cut(s) 463, 1130
SnaBI TACGTA 1 cut(s) 240
SpeI ACTAGT 1 cut(s) 445
SsiI CCGC 3 cut(s) 277, 1247, 1329
SspMI CTAG 6 cut(s) 5, 404, 446, 950, 1014, 1113
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 3 cut(s) 1155, 1203, 1227
SwaI ATTTAAAT 1 cut(s) 474
TaaI ACNGT 2 cut(s) 557, 851
TaiI ACGT 3 cut(s) 242, 907, 1275
TaqI TCGA 3 cut(s) 209, 889, 925
TatI WGTACW 1 cut(s) 450
TauI GCSGC 2 cut(s) 1249, 1332
TfiI GAWTC 5 cut(s) 384, 509, 722, 1057, 1285
Tru1I TTAA 9 cut(s) 312, 365, 464, 473, 491, 741, 894, 1131, 1235
Tru9I TTAA 9 cut(s) 312, 365, 464, 473, 491, 741, 894, 1131, 1235
TscAI CASTG 2 cut(s) 634, 854
TseFI GTSAC 5 cut(s) 169, 551, 623, 800, 818
TseI GCWGC 3 cut(s) 18, 641, 1149
Tsp45I GTSAC 5 cut(s) 169, 551, 623, 800, 818
TspDTI ATGAA 5 cut(s) 456, 888, 1111, 1409, 1419
TspGWI ACGGA 1 cut(s) 1309
TspRI CASTG 2 cut(s) 634, 854
Van91I CCANNNNNTGG 1 cut(s) 164
Vha464I CTTAAG 2 cut(s) 463, 1130
VpaK11BI GGWCC 1 cut(s) 811
VspI ATTAAT 1 cut(s) 312
XagI CCTNNNNNAGG 1 cut(s) 926
XapI RAATTY 2 cut(s) 475, 1464
XbaI TCTAGA 3 cut(s) 403, 1013, 1112
XmiI GTMKAC 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 1068
XspI CTAG 6 cut(s) 5, 404, 446, 950, 1014, 1113
Zsp2I ATGCAT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.