Rroxscaffold_1G00061030

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000110
Physical Location & Seq
Reverse (-)
83197681 .. 83200165
2485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061030.1

Sequence Viewer

Length: 708 bp
ATGGTCTTATCTGTCACGGACCTCTTAATTGGAAAACTTGTGACAATTCTTGAGAACGAAGGAATAACCATAGCCGGTGTTCGTGATGAAGTTGATAAGATTGAGGAGGAGTTTCTATGCATGAAAGCTTTCCTAAAGGATGCAGAGGCCAACAAAGCAAAAACTGAAGGAGAGAAATTGTGGGTTGCAAGAATCAGAGACTTAGTCCATGATGTTGAGGATATCATTGATGAATTCTTGTATCACGTGTATGAGAAGCAAAGTGGGGGTCGACTTTCAAGGGGGCTACACAAAACCATTCGTGCTCCAAGTAATCTTTGGTTCAGGCATAAAATTGCAAAGAAGTTGCAGAAAATTATTGAAATGATCAAAGCCATTCCAGAGAGGAATCAAAGATACGGTTTTGGCCTTGTTGGAGGAACAACTACATCTGAAGATATTTACAAATTGGTGCAGAACCAAGCCGAGTCCTCTATTTTCATTATGGAAGACGAACTGGTTGGGATTGAAGGCAAGAAGCAAATACTAATGGAATGGCTCATGGATAAAGAGCAACACCAAACTGTTATATCTGTGGTTGGGATGGGTGGTTCTGGAAAGACAACTCTAGTTGCCAAGAATTTCACCAATGAAAGGGTAAAGAGACATTTCGACTGTTGTGCATGGATTACCGTTTCCCAAACTTATGCTGTGGTAGACTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

235

Amino Acids

26.76

Weight (kDa)

6.11

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 90 1.6e-22 Rx N-terminal domain
NB-ARC PF00931 172 - 234 2e-15 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 271, 696
AcsI RAATTY 2 cut(s) 233, 619
AcuI CTGAAG 2 cut(s) 186, 453
AcvI CACGTG 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 633
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 279, 362, 509
AloI GAACNNNNNNTCC 2 cut(s) 574, 606
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw21I GWGCWC 1 cut(s) 307
Alw26I GTCTC 2 cut(s) 192, 637
AoxI GGCC 2 cut(s) 147, 406
ApoI RAATTY 2 cut(s) 233, 619
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 616
AvaII GGWCC 1 cut(s) 19
BbrPI CACGTG 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 307
BccI CCATC 1 cut(s) 577
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BclI TGATCA 1 cut(s) 366
BcoDI GTCTC 2 cut(s) 192, 637
BfaI CTAG 1 cut(s) 608
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 633
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 501
BseGI GGATG 2 cut(s) 145, 588
BseLI CCNNNNNNNGG 1 cut(s) 633
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 2 cut(s) 119, 122
BsgI GTGCAG 1 cut(s) 473
BshFI GGCC 2 cut(s) 149, 408
BsiHKAI GWGCWC 1 cut(s) 307
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 633
BsmAI GTCTC 2 cut(s) 192, 637
BsnI GGCC 2 cut(s) 149, 408
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 1 cut(s) 366
BspANI GGCC 2 cut(s) 149, 408
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 1 cut(s) 501
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 1 cut(s) 366
Bst4CI ACNGT 4 cut(s) 401, 565, 656, 673
BstBAI YACGTR 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 202
BstF5I GGATG 2 cut(s) 145, 588
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 2 cut(s) 192, 637
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 495
BsuRI GGCC 2 cut(s) 149, 408
BtsCI GGATG 2 cut(s) 145, 588
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 19
CviAII CATG 4 cut(s) 121, 209, 541, 663
CviJI RGCY 8 cut(s) 74, 128, 149, 286, 374, 408, 464, 538
CviKI_1 RGCY 8 cut(s) 74, 128, 149, 286, 374, 408, 464, 538
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 186, 453
Eco72I CACGTG 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 122
FaeI CATG 4 cut(s) 124, 212, 544, 666
FatI CATG 4 cut(s) 120, 208, 540, 662
FbaI TGATCA 1 cut(s) 366
FblI GTMKAC 2 cut(s) 271, 696
FokI GGATG 2 cut(s) 152, 595
FspBI CTAG 1 cut(s) 608
HaeIII GGCC 2 cut(s) 149, 408
HapII CCGG 1 cut(s) 75
Hin1II CATG 4 cut(s) 124, 212, 544, 666
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 3 cut(s) 192, 388, 467
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 616
Hpy166II GTNNAC 2 cut(s) 272, 697
Hpy188I TCNGA 3 cut(s) 197, 433, 707
Hpy188III TCNNGA 4 cut(s) 50, 83, 380, 594
Hpy8I GTNNAC 2 cut(s) 272, 697
HpyAV CCTTC 3 cut(s) 53, 161, 503
HpyCH4III ACNGT 4 cut(s) 401, 565, 656, 673
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 7 cut(s) 120, 143, 188, 338, 349, 454, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 4 cut(s) 124, 212, 544, 666
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 5 cut(s) 88, 310, 393, 482, 579
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 608
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 13, 40
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 2 cut(s) 446, 500
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 8 cut(s) 27, 45, 176, 233, 333, 354, 446, 619
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 8 cut(s) 32, 97, 100, 139, 211, 378, 410, 481
Mph1103I ATGCAT 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 366
NlaIII CATG 4 cut(s) 124, 212, 544, 666
NmeAIII GCCGAG 1 cut(s) 490
NmuCI GTSAC 2 cut(s) 13, 40
NsiI ATGCAT 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 192, 388
PflFI GACNNNGTC 1 cut(s) 203
PleI GAGTC 1 cut(s) 475
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 247
PspCI CACGTG 1 cut(s) 247
PspPI GGNCC 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 249
SalI GTCGAC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 476
SduI GDGCHC 1 cut(s) 307
SetI ASST 3 cut(s) 24, 130, 249
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 8 cut(s) 27, 45, 176, 233, 333, 354, 446, 619
SspMI CTAG 1 cut(s) 608
TaaI ACNGT 4 cut(s) 401, 565, 656, 673
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 271, 651
TasI AATT 8 cut(s) 27, 45, 176, 233, 333, 354, 446, 619
TfiI GAWTC 2 cut(s) 192, 388
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 2 cut(s) 13, 40
Tsp45I GTSAC 2 cut(s) 13, 40
TspDTI ATGAA 5 cut(s) 102, 137, 246, 469, 645
TspGWI ACGGA 1 cut(s) 32
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 2 cut(s) 233, 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmiI GTMKAC 2 cut(s) 271, 696
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 608
Zsp2I ATGCAT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.