Rh5AG121200

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
11316500 .. 11317333
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG121200.1

Sequence Viewer

Length: 834 bp
ATGGCCAATATGGCTTCATCTGCAACGGACCTCTTAATTGGAAAAATTGTGGCAATTCTTGAGAACGAAGGAACGACCATAGCCAGTATTTGGGATGAAGTTGATAAGATTAAGCAGGAGTTTTTGAGCATGAAAGCTTTCCTTGCGGATGCAGAGACCAACACAGCAAAAACGCAAGGAGAGAAATTGTGGGTTGCAAGCATCAGAGACTTGGCCTATGATGTTGAAGATATCATCGATGAATTCATGTATCATATGTATGAGAAGCAAACTGGGGGTCGACTTTCAAGGGGGCTACACAAAACCATTCGCACTCCAACTAGTCTTTGGTTCAGGCATAAAATTGCAAAGAAGTTGCAGAAGATTACTGAAATAATCAAAGCCATTCCAGAGAGGAATCAAAGGTACGGTGTTGGCCTTGTTGGAGGAGCAACTACATGTGAAGATATTTACAAATTGGTGCAGAACCAAGCCGAGTCCTCTATTTTCATTATGGAAGACGGACTGGTTGGGATTGAAGGCAAGAAGCAAATACTAATGGAATGGCTCATGGATGAAGAGCAACACCAAACTGTTATATCTGTGGTTGGGATGGGTGGTTCTGGAAAGACAACTCTAGTTGCCAAGACCTTTACCAATGAAAGGGTAAAGACTGAAGAGACATTTCGACTGTTGTGCATGGATTACCGTTTCCCAAACTTATGCTGTGGCAGACTTGTTCCGAAGCTTGATCATAGAACTCCACAAATCAAGGCAGGAAGAGTACCCTGCAAACTTAAATGCCATGAGCCGCATAGAATTGCTAGAGTTACTGACAAACTACTTGGAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

277

Amino Acids

31.29

Weight (kDa)

8.43

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 96 1.2e-20 Rx N-terminal domain
NB-ARC PF00931 175 - 216 9.2e-08 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AccI GTMKAC 1 cut(s) 280
AciI CCGC 2 cut(s) 146, 791
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 675
AfaI GTAC 2 cut(s) 407, 765
AfiI CCNNNNNNNGG 2 cut(s) 90, 642
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 3 cut(s) 227, 288, 518
AhlI ACTAGT 1 cut(s) 320
AloI GAACNNNNNNTCC 2 cut(s) 583, 615
AluBI AGCT 2 cut(s) 137, 727
AluI AGCT 2 cut(s) 137, 727
Alw26I GTCTC 3 cut(s) 149, 201, 653
AoxI GGCC 3 cut(s) 3, 213, 415
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
Asp700I GAANNNNTTC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 28
AvaII GGWCC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 504
BccI CCATC 1 cut(s) 586
BcgI CGANNNNNNTGC 2 cut(s) 657, 691
BclI TGATCA 1 cut(s) 730
BcoDI GTCTC 3 cut(s) 149, 201, 653
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 3 cut(s) 321, 617, 804
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 1 cut(s) 791
BlsI GCNGC 1 cut(s) 792
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 139, 210
BmuI ACTGGG 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 149
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 642
Bse1I ACTGG 3 cut(s) 84, 277, 510
BseCI ATCGAT 1 cut(s) 237
BseGI GGATG 4 cut(s) 100, 154, 559, 597
BseLI CCNNNNNNNGG 2 cut(s) 90, 642
BseNI ACTGG 3 cut(s) 84, 277, 510
BseRI GAGGAG 1 cut(s) 441
BsgI GTGCAG 1 cut(s) 482
BshFI GGCC 3 cut(s) 5, 215, 417
BshVI ATCGAT 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 90, 642
BsmAI GTCTC 3 cut(s) 149, 201, 653
BsnI GGCC 3 cut(s) 5, 215, 417
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 730
BspACI CCGC 2 cut(s) 146, 791
BspANI GGCC 3 cut(s) 5, 215, 417
BspDI ATCGAT 1 cut(s) 237
BspQI GCTCTTC 1 cut(s) 552
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 3 cut(s) 84, 277, 510
BssMI GATC 1 cut(s) 730
Bst4CI ACNGT 4 cut(s) 410, 574, 672, 689
Bst6I CTCTTC 3 cut(s) 552, 651, 754
BstC8I GCNNGC 1 cut(s) 199
BstF5I GGATG 4 cut(s) 100, 154, 559, 597
BstKTI GATC 1 cut(s) 733
BstMAI GTCTC 3 cut(s) 149, 201, 653
BstMBI GATC 1 cut(s) 730
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 143
BstNSI RCATGY 1 cut(s) 441
BstV2I GAAGAC 1 cut(s) 504
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 3 cut(s) 5, 215, 417
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 4 cut(s) 100, 154, 559, 597
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 28
ClaI ATCGAT 1 cut(s) 237
Csp6I GTAC 2 cut(s) 406, 764
CviAII CATG 6 cut(s) 130, 247, 438, 550, 679, 785
CviQI GTAC 2 cut(s) 406, 764
DpnI GATC 1 cut(s) 732
DpnII GATC 1 cut(s) 730
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 552, 651, 754
EarI CTCTTC 3 cut(s) 552, 651, 754
Eco31I GGTCTC 1 cut(s) 149
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 675
EcoRI GAATTC 1 cut(s) 242
EcoRV GATATC 1 cut(s) 232
FaeI CATG 6 cut(s) 133, 250, 441, 553, 682, 788
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 6 cut(s) 129, 246, 437, 549, 678, 784
FauNDI CATATG 1 cut(s) 255
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 791
FokI GGATG 4 cut(s) 107, 161, 566, 604
Fsp4HI GCNGC 1 cut(s) 791
FspBI CTAG 3 cut(s) 321, 617, 804
GluI GCNGC 1 cut(s) 791
HaeIII GGCC 3 cut(s) 5, 215, 417
Hin1II CATG 6 cut(s) 133, 250, 441, 553, 682, 788
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HindIII AAGCTT 2 cut(s) 135, 725
HinfI GANTC 3 cut(s) 397, 476, 828
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 206, 723
Hpy188III TCNNGA 3 cut(s) 59, 389, 603
Hpy8I GTNNAC 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 62, 512
HpyCH4III ACNGT 4 cut(s) 410, 574, 672, 689
HpyCH4V TGCA 8 cut(s) 23, 152, 197, 347, 358, 463, 678, 771
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 143
Hsp92II CATG 6 cut(s) 133, 250, 441, 553, 682, 788
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 1 cut(s) 730
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 1 cut(s) 428
LpnPI CCDG 9 cut(s) 97, 101, 258, 319, 402, 491, 588, 741, 781
LweI GCATC 2 cut(s) 139, 210
MaeI CTAG 3 cut(s) 321, 617, 804
MaeIII GTNAC 1 cut(s) 808
MalI GATC 1 cut(s) 732
MboI GATC 1 cut(s) 730
MboII GAAGA 7 cut(s) 239, 373, 455, 509, 569, 668, 771
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 36, 45, 54, 185, 242, 342, 455, 798
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 2 cut(s) 341, 403
MnlI CCTC 4 cut(s) 41, 387, 419, 490
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 137
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 35, 111, 777
MslI CAYNNNNRTG 1 cut(s) 258
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 143
NdeI CATATG 1 cut(s) 255
NdeII GATC 1 cut(s) 730
NlaIII CATG 6 cut(s) 133, 250, 441, 553, 682, 788
NmeAIII GCCGAG 1 cut(s) 499
NspI RCATGY 1 cut(s) 441
PciI ACATGT 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 397
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 1 cut(s) 792
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PscI ACATGT 1 cut(s) 437
PspPI GGNCC 1 cut(s) 28
RsaI GTAC 2 cut(s) 407, 765
RsaNI GTAC 2 cut(s) 406, 764
RseI CAYNNNNRTG 1 cut(s) 258
SalI GTCGAC 1 cut(s) 279
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 3 cut(s) 35, 111, 777
SatI GCNGC 1 cut(s) 791
Sau3AI GATC 1 cut(s) 730
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 485
SetI ASST 5 cut(s) 33, 139, 407, 632, 729
SfaNI GCATC 2 cut(s) 139, 210
SinI GGWCC 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 8 cut(s) 36, 45, 54, 185, 242, 342, 455, 798
SsiI CCGC 2 cut(s) 146, 791
SspMI CTAG 3 cut(s) 321, 617, 804
TaaI ACNGT 4 cut(s) 410, 574, 672, 689
TaqI TCGA 3 cut(s) 237, 280, 667
TasI AATT 8 cut(s) 36, 45, 54, 185, 242, 342, 455, 798
TauI GCSGC 1 cut(s) 793
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 3 cut(s) 35, 111, 777
Tru9I TTAA 3 cut(s) 35, 111, 777
TspDTI ATGAA 8 cut(s) 6, 111, 146, 235, 255, 478, 570, 654
TspGWI ACGGA 2 cut(s) 41, 516
Van91I CCANNNNNTGG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 441
XcmI CCANNNNNNNNNTGG 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 3 cut(s) 321, 617, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.