MD06G1154600.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
29766778 .. 29769541
2764 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1154600.v1.1.491

Sequence Viewer

Length: 2709 bp
ATGGAGTCAGCTGCATCACTATTGATTGGGAAAATTGCGGCCATTCTTGAGAACGAAGCATCTTCCATAGCGGCAGTCCGTGATGAAGTTGATGAGCTTAAGCTGGAGCTCATAAGCATGAAATCTTTCTTAATAGATGCTGAAGGCAAGGAACCACAAACAGAAGGAGTGAAAACGTGGGTTACAAGCGTCAGAAATTTGACCTGCGATGCGGAAAATGTCATTGATGAGTTCCTGTATCACATATATGACAAGCACAGTGCGAGTCCATCTGCAAAATTGCTCCACAGAACCATTTACTTTCCAAAGAATCTTTGGTATAGGCATCGAATAGCCAAAAAATTACAGAAAATCACAAAAAAGATCAAAGCCATTCCAGAGAGGAATGAGAGATATGGTGTCTCTACAATAGAAGGAACAACTTCGGATAGTGTTCCCAGATGGGTGAAGAACAAAGCCCAGTCTTCTCTTTATATTATGGAAGACGAACTAATCGGGATTGAAGACAAGAAGCAAACGTTAATGGGATTGTTGATGAATGGAGAGGAAAATGAAATGGTTGTGTCTGTGGTCGGGATGGGAGGATCAGGCAAGACAACTCTTGTTGCCAATACCTTCAACAACGAAAATGTAAAGCGACATTTTGACTGTTATGCATGGATCACTGTTTCTCAAACTTATGTGATCGAAGACTTATTCAAAAATCTGATCAAGCAATTCCACCAAGGAAGAAAGGAAGAGGTGACTGAACATTTGAATTCCATGAGTTATGAAGAATTGTTAGAGATGTTGTCGACATACTTGAAGTCTAAAAGGATACCACTTCTTAATAGACATCATGGAAGTCGAATCATGCTTACAACTCGAAAGAAAGGCATAGCTTCCTATTCTTTTGAAGTTGAAAGTTGTCCTATTGAAATTGAACCCTTAGAAAACAATGAAGCTTGGAAGCTCTTTAGCAAGAAAGCATTCTCAACTTACGATAATAAATCGTGTCCACCAGAGCTTGAATCATTAGCATGGAAACTTGTGGAAAAGTGTGAAGGCCTACCTCTGGCTGTGGTAACTTTAGGTGGTCTAATGTCTTCCAAGAGGTCATCATCGGAATGGAGAAGAGTATACAACAGCTTAAATTGGCACTTGACTAACCATCCTATGCTAGAATCAATGAGCAGCATCTTGTTGCTTAGTTTCAACAATTTGCCCAACCGGTTGAAGCCATGTTTCCTATATTGTGCCCTTTTCCCAGAAGATTATCTCATCAGAAGAAAAAGGTTGATCAAGTTGTGGATAGCTGAAGGGCTTGTTGAACCAATTGATGGGGTCACACCAGAAGAAGTTGCAGAGGACTATCTTGTGGAACTTACTGGTCGTAGCATGCTACAAGTTGAACTAAGGAATGAAGCTGGAAGACCAAAAGCATGTAAGATGCATGATCTTATGCGTGAGCTTGCTTTGTCGACATCAAAAAAAGAAAAGTTTGGTGCAACATATGTTGGCCGAGATATAGTAGATAAAGCTGAAATCCGTCGATTGTCAATTCAAACAACTGAAGGGGAAATTAATTCTTGCACAGGTATGTCAGAGCTTCGCTCCTTTCTTGTCTTTGGCACGTTAAAGAAATTGCCTTCTGGATTCAAGTTGTTGAGAGTTCTAGATCTGGAGGATGCCCCAATTGATAGATTTCCAGATGAACTAGTGTACTTGTTCAACTTAAGATATTTAAATTTGAAGGGAACTTTAATTGAGGAGCTTCCAGAATCCATCGGACGGCTTCGCAACCTTCAAAACTTGAACATCCGTGACAGTAAGATAAAGGCACTTCCAAAAGCAATCTCCAAGTTAGTAAACCTACGCCATCTAACAATGTATCGTTACACTAATTATCATTATGGCTTTATGTATGTCATTGGGATAAAAGCAGCATCCGATCTAAGTAACTTACAGAAACTGCAAGTTTTGCAATCTGTTGAATCAGAAGGAAGGATTATTAAAGTCATCAGGAATATGACCCAACTTACAAGCCTCGGTATTACAAATGTGAAAGCAAGTGACGAGATGGACCTATGTGACTCCCTTCAAAAGTTAGAGCTCCTTCACTATTTGTTTTTGATGGCAAGTGATGAAGAGGAGTTTCTTCGAGTTAATGCACTACGTTCGCCTCCTCCAAACCTTCAAAAGGTTTATTTGGCCGGAAAACTAGAAAAGGTACCGCTTTGGTTTGGTTCACTCCATAACCTGACACGTATGCAGCTATATTGGTCTAGACTTGAAGAAGATTTGCTACCACACATTCAAGCATTGCCGAATCTTGAGAGGCTTGAGCTAGTTAATGCATATGTTGGCGAAAAATTGTGTTTCTCCAGAGGCTTCATAAAGCTTAAGCGTTTGGATTTGCGCAACCTCCCCTTATTGAATAGTATAGCTATAGAGAAAGGGGCGATGCCAAATCTCCAGGTCTTAGACATTTGGGAATGCATGGAGTTAAAGACATTGCCAGAGGGCATTGAGCTCCTTGCTAACGTAGAACGCTTGATTCTGGGTCATGTTCCAAGGCAACTTATAGAGTCCGTAAAAAGAGGCATGGATCATCCAAAGGTACAACACTTTCCTGAAATCAGCCTGTATTACATGGGACACCATGAAAGATTGTCCGGTATTCACTCTCGTAGAAGGTACGCACACTTTTATCCTTGCATAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

903

Amino Acids

103.65

Weight (kDa)

8.49

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 88 6.5e-21 Rx N-terminal domain
NB-ARC PF00931 168 - 326 2.5e-29 NB-ARC domain
WHD_DRP PF23559 414 - 485 2.4e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 530 - 828 1.9e-42 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2399
Acc36I ACCTGC 1 cut(s) 212
Acc65I GGTACC 1 cut(s) 2209
AccB1I GGYRCC 1 cut(s) 2209
AccB7I CCANNNNNTGG 1 cut(s) 1319
AccI GTMKAC 3 cut(s) 794, 1119, 1460
AciI CCGC 4 cut(s) 38, 71, 212, 2213
AclI AACGTT 1 cut(s) 518
AclWI GGATC 3 cut(s) 592, 668, 2595
AcoI YGGCCR 3 cut(s) 39, 1498, 2190
AcsI RAATTY 4 cut(s) 196, 757, 1726, 2703
AcuI CTGAAG 3 cut(s) 162, 1317, 1572
AfaI GTAC 4 cut(s) 1703, 2211, 2601, 2678
AfiI CCNNNNNNNGG 4 cut(s) 1054, 1319, 1770, 2179
AflII CTTAAG 3 cut(s) 98, 1714, 2381
AflIII ACRYGT 1 cut(s) 2243
AgeI ACCGGT 1 cut(s) 1209
AhlI ACTAGT 1 cut(s) 1696
AjnI CCWGG 1 cut(s) 2454
Alw21I GWGCWC 3 cut(s) 111, 2094, 2514
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 3 cut(s) 592, 668, 2595
AlwNI CAGNNNCTG 1 cut(s) 1951
AoxI GGCC 4 cut(s) 39, 1045, 1498, 2190
ApeKI GCWGC 4 cut(s) 11, 1173, 1922, 2251
ApoI RAATTY 4 cut(s) 196, 757, 1726, 2703
ArsI GACNNNNNNTTYG 2 cut(s) 736, 768
AseI ATTAAT 1 cut(s) 1563
AsiGI ACCGGT 1 cut(s) 1209
Asp700I GAANNNNTTC 3 cut(s) 125, 421, 968
Asp718I GGTACC 1 cut(s) 2209
AspLEI GCGC 1 cut(s) 2400
AspS9I GGNCC 1 cut(s) 2062
AsuHPI GGTGA 2 cut(s) 457, 754
AvaII GGWCC 1 cut(s) 2062
BaeGI GKGCMC 1 cut(s) 1240
BanI GGYRCC 1 cut(s) 2209
BanII GRGCYC 3 cut(s) 111, 2094, 2514
BarI GAAGNNNNNNTAC 2 cut(s) 2268, 2300
BbsI GAAGAC 6 cut(s) 456, 489, 510, 696, 1077, 1417
Bbv12I GWGCWC 3 cut(s) 111, 2094, 2514
BbvI GCAGC 3 cut(s) 1185, 1934, 2263
BccI CCATC 9 cut(s) 277, 435, 571, 1158, 1313, 1772, 1866, 2053, 2107
BceAI ACGGC 1 cut(s) 1787
BcgI CGANNNNNNTGC 2 cut(s) 2139, 2173
BciT130I CCWGG 1 cut(s) 2456
BciVI GTATCC 1 cut(s) 810
BclI TGATCA 2 cut(s) 708, 1278
BcoDI GTCTC 1 cut(s) 406
BcuI ACTAGT 1 cut(s) 1696
BfaI CTAG 6 cut(s) 1160, 1655, 1697, 2201, 2265, 2327
BfmI CTRYAG 1 cut(s) 2427
BfrI CTTAAG 3 cut(s) 98, 1714, 2381
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 1 cut(s) 810
BglII AGATCT 1 cut(s) 1657
BisI GCNGC 6 cut(s) 12, 39, 72, 1174, 1923, 2252
BlsI GCNGC 6 cut(s) 13, 40, 73, 1175, 1924, 2253
Bme1390I CCNGG 1 cut(s) 2456
Bme18I GGWCC 1 cut(s) 2062
BmgT120I GGNCC 1 cut(s) 2062
BmiI GGNNCC 2 cut(s) 153, 2211
BmrFI CCNGG 1 cut(s) 2456
BmrI ACTGGG 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 454
BpiI GAAGAC 6 cut(s) 456, 489, 510, 696, 1077, 1417
BplI GAGNNNNNCTC 2 cut(s) 1577, 1609
BpmI CTGGAG 4 cut(s) 125, 1682, 2347, 2438
BpuEI CTTGAG 3 cut(s) 68, 2333, 2342
BsaAI YACGTR 1 cut(s) 2246
BsaJI CCNNGG 3 cut(s) 724, 2026, 2552
BsaWI WCCGGW 2 cut(s) 1209, 2654
Bsc4I CCNNNNNNNGG 4 cut(s) 1054, 1319, 1770, 2179
Bse118I RCCGGY 1 cut(s) 1209
Bse1I ACTGG 2 cut(s) 460, 1372
Bse3DI GCAATG 2 cut(s) 2300, 2492
BseBI CCWGG 1 cut(s) 2456
BseDI CCNNGG 3 cut(s) 724, 2026, 2552
BseGI GGATG 6 cut(s) 582, 1150, 1672, 1797, 1925, 2590
BseLI CCNNNNNNNGG 4 cut(s) 1054, 1319, 1770, 2179
BseMI GCAATG 2 cut(s) 2300, 2492
BseNI ACTGG 2 cut(s) 460, 1372
BseRI GAGGAG 3 cut(s) 1763, 2144, 2154
BseSI GKGCMC 1 cut(s) 1240
BseXI GCAGC 3 cut(s) 1185, 1934, 2263
BshFI GGCC 4 cut(s) 41, 1047, 1500, 2192
BshNI GGYRCC 1 cut(s) 2209
BshTI ACCGGT 1 cut(s) 1209
BsiHKAI GWGCWC 3 cut(s) 111, 2094, 2514
BsiSI CCGG 3 cut(s) 1210, 2193, 2655
BslFI GGGAC 1 cut(s) 2649
BslI CCNNNNNNNGG 4 cut(s) 1054, 1319, 1770, 2179
BsmAI GTCTC 1 cut(s) 406
BsmFI GGGAC 1 cut(s) 2649
BsmI GAATGC 2 cut(s) 968, 2480
BsnI GGCC 4 cut(s) 41, 1047, 1500, 2192
Bsp1286I GDGCHC 4 cut(s) 111, 1240, 2094, 2514
BspACI CCGC 4 cut(s) 38, 71, 212, 2213
BspANI GGCC 4 cut(s) 41, 1047, 1500, 2192
BspLI GGNNCC 2 cut(s) 153, 2211
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 3 cut(s) 592, 668, 2595
BspT107I GGYRCC 1 cut(s) 2209
BspTI CTTAAG 3 cut(s) 98, 1714, 2381
BsrDI GCAATG 2 cut(s) 2300, 2492
BsrFI RCCGGY 1 cut(s) 1209
BsrI ACTGG 2 cut(s) 460, 1372
BssAI RCCGGY 1 cut(s) 1209
BssECI CCNNGG 3 cut(s) 724, 2026, 2552
BssNAI GTATAC 1 cut(s) 1120
BssT1I CCWWGG 2 cut(s) 724, 2552
Bst1107I GTATAC 1 cut(s) 1120
Bst2UI CCWGG 1 cut(s) 2456
Bst4CI ACNGT 4 cut(s) 260, 650, 667, 1808
Bst6I CTCTTC 3 cut(s) 732, 1108, 2121
BstAFI CTTAAG 3 cut(s) 98, 1714, 2381
BstAPI GCANNNNNTGC 1 cut(s) 1960
BstBAI YACGTR 1 cut(s) 2246
BstC8I GCNNGC 2 cut(s) 1379, 1452
BstDEI CTNAG 5 cut(s) 928, 1187, 1394, 1934, 2461
BstENI CCTNNNNNAGG 1 cut(s) 2177
BstF5I GGATG 6 cut(s) 582, 1150, 1672, 1797, 1925, 2590
BstHHI GCGC 1 cut(s) 2400
BstMAI GTCTC 1 cut(s) 406
BstMWI GCNNNNNNNGC 1 cut(s) 1960
BstNI CCWGG 1 cut(s) 2456
BstNSI RCATGY 2 cut(s) 1381, 1425
BstSCI CCNGG 1 cut(s) 2454
BstSFI CTRYAG 1 cut(s) 2427
BstSLI GKGCMC 1 cut(s) 1240
BstV1I GCAGC 3 cut(s) 1185, 1934, 2263
BstV2I GAAGAC 6 cut(s) 456, 489, 510, 696, 1077, 1417
BstX2I RGATCY 1 cut(s) 1657
BstYI RGATCY 1 cut(s) 1657
BstZ17I GTATAC 1 cut(s) 1120
BsuI GTATCC 1 cut(s) 810
BsuRI GGCC 4 cut(s) 41, 1047, 1500, 2192
BtgZI GCGATG 2 cut(s) 222, 2456
BtsCI GGATG 6 cut(s) 582, 1150, 1672, 1797, 1925, 2590
BtsIMutI CAGTG 2 cut(s) 265, 663
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 1379, 1452
CaiI CAGNNNCTG 1 cut(s) 1951
CfoI GCGC 1 cut(s) 2400
Cfr10I RCCGGY 1 cut(s) 1209
Cfr13I GGNCC 1 cut(s) 2062
CseI GACGC 1 cut(s) 178
Csp6I GTAC 4 cut(s) 1702, 2210, 2600, 2677
CspAI ACCGGT 1 cut(s) 1209
CviQI GTAC 4 cut(s) 1702, 2210, 2600, 2677
DdeI CTNAG 5 cut(s) 928, 1187, 1394, 1934, 2461
DraI TTTAAA 1 cut(s) 1725
EaeI YGGCCR 3 cut(s) 39, 1498, 2190
Eam1104I CTCTTC 3 cut(s) 732, 1108, 2121
EarI CTCTTC 3 cut(s) 732, 1108, 2121
Ecl136II GAGCTC 3 cut(s) 109, 2092, 2512
Eco130I CCWWGG 2 cut(s) 724, 2552
Eco147I AGGCCT 1 cut(s) 1047
Eco24I GRGCYC 3 cut(s) 111, 2094, 2514
Eco47I GGWCC 1 cut(s) 2062
Eco53kI GAGCTC 3 cut(s) 109, 2092, 2512
Eco57I CTGAAG 3 cut(s) 162, 1317, 1572
EcoICRI GAGCTC 3 cut(s) 109, 2092, 2512
EcoNI CCTNNNNNAGG 1 cut(s) 2177
EcoRI GAATTC 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 2454
EcoT14I CCWWGG 2 cut(s) 724, 2552
EcoT22I ATGCAT 4 cut(s) 658, 1434, 2338, 2480
EcoT38I GRGCYC 3 cut(s) 111, 2094, 2514
ErhI CCWWGG 2 cut(s) 724, 2552
FaqI GGGAC 1 cut(s) 2649
FauNDI CATATG 2 cut(s) 1492, 2338
FbaI TGATCA 2 cut(s) 708, 1278
FblI GTMKAC 3 cut(s) 794, 1119, 1460
Fnu4HI GCNGC 6 cut(s) 12, 39, 72, 1174, 1923, 2252
FokI GGATG 6 cut(s) 589, 1137, 1679, 1784, 1912, 2577
FriOI GRGCYC 3 cut(s) 111, 2094, 2514
Fsp4HI GCNGC 6 cut(s) 12, 39, 72, 1174, 1923, 2252
FspBI CTAG 6 cut(s) 1160, 1655, 1697, 2201, 2265, 2327
FspI TGCGCA 1 cut(s) 2399
GlaI GCGC 1 cut(s) 2399
GluI GCNGC 6 cut(s) 12, 39, 72, 1174, 1923, 2252
GsuI CTGGAG 4 cut(s) 125, 1682, 2347, 2438
HaeIII GGCC 4 cut(s) 41, 1047, 1500, 2192
HapII CCGG 3 cut(s) 1210, 2193, 2655
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 2400
Hin6I GCGC 1 cut(s) 2398
HinP1I GCGC 1 cut(s) 2398
HincII GTYRAC 2 cut(s) 795, 1461
HindII GTYRAC 2 cut(s) 795, 1461
HindIII AAGCTT 2 cut(s) 942, 2378
HpaII CCGG 3 cut(s) 1210, 2193, 2655
HphI GGTGA 2 cut(s) 457, 754
Hpy166II GTNNAC 7 cut(s) 795, 998, 1120, 1461, 1702, 1849, 2228
Hpy188I TCNGA 9 cut(s) 194, 427, 708, 1105, 1265, 1585, 1769, 1930, 1978
Hpy8I GTNNAC 7 cut(s) 795, 998, 1120, 1461, 1702, 1849, 2228
Hpy99I CGWCG 1 cut(s) 1533
HpyCH4III ACNGT 4 cut(s) 260, 650, 667, 1808
HpyCH4IV ACGT 6 cut(s) 176, 518, 1613, 2155, 2245, 2523
HpyF10VI GCNNNNNNNGC 1 cut(s) 1960
HpyF3I CTNAG 5 cut(s) 928, 1187, 1394, 1934, 2461
HpySE526I ACGT 6 cut(s) 176, 518, 1613, 2155, 2245, 2523
HspAI GCGC 1 cut(s) 2398
KpnI GGTACC 1 cut(s) 2213
Ksp22I TGATCA 2 cut(s) 708, 1278
LmnI GCTCC 6 cut(s) 106, 288, 1598, 1750, 2097, 2517
Lsp1109I GCAGC 3 cut(s) 1185, 1934, 2263
MaeI CTAG 6 cut(s) 1160, 1655, 1697, 2201, 2265, 2327
MaeII ACGT 6 cut(s) 176, 518, 1613, 2155, 2245, 2523
MaeIII GTNAC 9 cut(s) 181, 742, 1063, 1324, 1802, 1874, 1937, 2051, 2069
MfeI CAATTG 2 cut(s) 1314, 1674
MflI RGATCY 1 cut(s) 1657
MhlI GDGCHC 4 cut(s) 111, 1240, 2094, 2514
MlyI GAGTC 4 cut(s) 14, 274, 2066, 2576
Mph1103I ATGCAT 4 cut(s) 658, 1434, 2338, 2480
MroXI GAANNNNTTC 3 cut(s) 125, 421, 968
MslI CAYNNNNRTG 5 cut(s) 116, 246, 1018, 1105, 1577
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 3 cut(s) 98, 1714, 2381
MspI CCGG 3 cut(s) 1210, 2193, 2655
MspR9I CCNGG 1 cut(s) 2456
MunI CAATTG 2 cut(s) 1314, 1674
Mva1269I GAATGC 2 cut(s) 968, 2480
MvaI CCWGG 1 cut(s) 2456
MwoI GCNNNNNNNGC 1 cut(s) 1960
NdeI CATATG 2 cut(s) 1492, 2338
NlaIV GGNNCC 2 cut(s) 153, 2211
NmeAIII GCCGAG 1 cut(s) 1526
NmuCI GTSAC 5 cut(s) 742, 1324, 1802, 2051, 2069
NsbI TGCGCA 1 cut(s) 2399
NsiI ATGCAT 4 cut(s) 658, 1434, 2338, 2480
NspI RCATGY 2 cut(s) 1381, 1425
PaeI GCATGC 1 cut(s) 1381
PceI AGGCCT 1 cut(s) 1047
PctI GAATGC 2 cut(s) 968, 2480
PdmI GAANNNNTTC 3 cut(s) 125, 421, 968
PfeI GAWTC 9 cut(s) 310, 849, 1010, 1163, 1635, 1760, 1973, 2308, 2536
PflMI CCANNNNNTGG 1 cut(s) 1319
PinAI ACCGGT 1 cut(s) 1209
PkrI GCNGC 6 cut(s) 13, 40, 73, 1175, 1924, 2253
PleI GAGTC 4 cut(s) 13, 273, 2066, 2575
PpsI GAGTC 4 cut(s) 13, 273, 2066, 2575
Ppu21I YACGTR 1 cut(s) 2246
PshBI ATTAAT 1 cut(s) 1563
Psp124BI GAGCTC 3 cut(s) 111, 2094, 2514
Psp1406I AACGTT 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 2454
PspGI CCWGG 1 cut(s) 2454
PspN4I GGNNCC 2 cut(s) 153, 2211
PspPI GGNCC 1 cut(s) 2062
PstNI CAGNNNCTG 1 cut(s) 1951
PsuI RGATCY 1 cut(s) 1657
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 4 cut(s) 1703, 2211, 2601, 2678
RsaNI GTAC 4 cut(s) 1702, 2210, 2600, 2677
RseI CAYNNNNRTG 5 cut(s) 116, 246, 1018, 1105, 1577
SacI GAGCTC 3 cut(s) 111, 2094, 2514
SalI GTCGAC 2 cut(s) 793, 1459
SatI GCNGC 6 cut(s) 12, 39, 72, 1174, 1923, 2252
Sau96I GGNCC 1 cut(s) 2062
SchI GAGTC 4 cut(s) 14, 274, 2066, 2576
ScrFI CCNGG 1 cut(s) 2456
SduI GDGCHC 4 cut(s) 111, 1240, 2094, 2514
SfcI CTRYAG 1 cut(s) 2427
SinI GGWCC 1 cut(s) 2062
SmiI ATTTAAAT 1 cut(s) 1725
SmiMI CAYNNNNRTG 5 cut(s) 116, 246, 1018, 1105, 1577
SmlI CTYRAG 6 cut(s) 47, 98, 1714, 2312, 2321, 2381
SmoI CTYRAG 6 cut(s) 47, 98, 1714, 2312, 2321, 2381
SpeI ACTAGT 1 cut(s) 1696
SphI GCATGC 1 cut(s) 1381
SseBI AGGCCT 1 cut(s) 1047
SsiI CCGC 4 cut(s) 38, 71, 212, 2213
SspMI CTAG 6 cut(s) 1160, 1655, 1697, 2201, 2265, 2327
SstI GAGCTC 3 cut(s) 111, 2094, 2514
StuI AGGCCT 1 cut(s) 1047
StyD4I CCNGG 1 cut(s) 2454
StyI CCWWGG 2 cut(s) 724, 2552
SwaI ATTTAAAT 1 cut(s) 1725
TaaI ACNGT 4 cut(s) 260, 650, 667, 1808
TaiI ACGT 6 cut(s) 179, 521, 1616, 2158, 2248, 2526
TaqI TCGA 8 cut(s) 328, 687, 794, 847, 865, 1460, 1531, 2140
TatI WGTACW 1 cut(s) 1701
TauI GCSGC 2 cut(s) 41, 74
TfiI GAWTC 9 cut(s) 310, 849, 1010, 1163, 1635, 1760, 1973, 2308, 2536
TscAI CASTG 2 cut(s) 265, 670
TseFI GTSAC 5 cut(s) 742, 1324, 1802, 2051, 2069
TseI GCWGC 4 cut(s) 11, 1173, 1922, 2251
Tsp45I GTSAC 5 cut(s) 742, 1324, 1802, 2051, 2069
TspGWI ACGGA 4 cut(s) 68, 1517, 1790, 2560
TspRI CASTG 2 cut(s) 265, 670
Van91I CCANNNNNTGG 1 cut(s) 1319
Vha464I CTTAAG 3 cut(s) 98, 1714, 2381
VpaK11BI GGWCC 1 cut(s) 2062
VspI ATTAAT 1 cut(s) 1563
XagI CCTNNNNNAGG 1 cut(s) 2177
XapI RAATTY 4 cut(s) 196, 757, 1726, 2703
XbaI TCTAGA 2 cut(s) 1654, 2264
XceI RCATGY 2 cut(s) 1381, 1425
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
XmiI GTMKAC 3 cut(s) 794, 1119, 1460
XmnI GAANNNNTTC 3 cut(s) 125, 421, 968
XspI CTAG 6 cut(s) 1160, 1655, 1697, 2201, 2265, 2327
Zsp2I ATGCAT 4 cut(s) 658, 1434, 2338, 2480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.