FvH4_3g11501

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000110
Physical Location & Seq
Forward (+)
6777322 .. 6777858
537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11501.t1

Sequence Viewer

Length: 537 bp
ATGGGATTAATGGCAAGTAATGAGGAGGAAATTCTTCCGGTGAAAGCACAGTGTCCGCCTCTTCCGTACTTTGAAAAGCTTTGTTTGATTGGCAGATTGCAAAATGTAATACCTTGGTTTTCTTCACTGCACAGCATCAGAACTCTGTATCTGCATTGGTCTCGACTTGAAGAGGATTTACTTCCTCAAATTGAAGCACTTCCCTCTCTTACATGTCTTTATCTTTGTAATGCATATGTTGGAGAAGAGTTGTGTTTGCGCAGAGGCTTTGCAAAGCTGGTGTCATTGCAGTTGTTCAATTTTGCCTCGTTGAAGAAGATAATTATAGAAAAAGGGGCCATGCCTAATCTCCAGTACTTGTGGGTTGAACACTGCATGGAACTGAGGACAGTGCCACTGGGACTCGAATACCTTCATACTCTACAAACCTTGGGCTTGGCAGTTGTTCCCGTTGAAGTTATTCAGCCTATTCGGAAAGACGGTGTGGATCGCTCTAAGCAGGGGCGGATTCAGGAATTGAAACAAGGTGGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

179

Amino Acids

20.29

Weight (kDa)

6.89

Isoelectric Point (pI)

60.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 20 - 144 6.4e-11 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 260
AciI CCGC 2 cut(s) 56, 505
AclWI GGATC 1 cut(s) 495
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 2 cut(s) 68, 356
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 8 cut(s) 74, 170, 194, 298, 313, 368, 455, 520
AluBI AGCT 2 cut(s) 79, 277
AluI AGCT 2 cut(s) 79, 277
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 1 cut(s) 495
AoxI GGCC 1 cut(s) 336
ApoI RAATTY 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AseI ATTAAT 1 cut(s) 8
Asp700I GAANNNNTTC 4 cut(s) 33, 198, 411, 459
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 52
BarI GAAGNNNNNNTAC 2 cut(s) 162, 194
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BcoDI GTCTC 1 cut(s) 165
BmcAI AGTACT 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 337
BmrI ACTGGG 1 cut(s) 407
BmsI GCATC 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 113, 429
BsaWI WCCGGW 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 352, 402
Bse3DI GCAATG 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 113, 429
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 352, 402
BseRI GAGGAG 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 414
BsmAI GTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 1 cut(s) 338
Bso31I GGTCTC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 487
BspACI CCGC 2 cut(s) 56, 505
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 337
BspPI GGATC 1 cut(s) 495
BspTNI GGTCTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 2 cut(s) 352, 402
BssECI CCNNGG 2 cut(s) 113, 429
BssMI GATC 1 cut(s) 487
BssT1I CCWWGG 2 cut(s) 113, 429
Bst4CI ACNGT 3 cut(s) 51, 391, 482
Bst6I CTCTTC 3 cut(s) 66, 165, 240
BstDEI CTNAG 2 cut(s) 383, 495
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 1 cut(s) 490
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 216
BsuRI GGCC 1 cut(s) 338
BtsI GCAGTG 2 cut(s) 125, 370
BtsIMutI CAGTG 5 cut(s) 56, 125, 370, 395, 396
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 336
Csp6I GTAC 2 cut(s) 67, 355
CviAII CATG 3 cut(s) 213, 340, 376
CviJI RGCY 6 cut(s) 79, 267, 277, 338, 435, 466
CviKI_1 RGCY 6 cut(s) 79, 267, 277, 338, 435, 466
CviQI GTAC 2 cut(s) 67, 355
DdeI CTNAG 2 cut(s) 383, 495
DpnI GATC 1 cut(s) 489
DpnII GATC 1 cut(s) 487
Eam1104I CTCTTC 3 cut(s) 66, 165, 240
EarI CTCTTC 3 cut(s) 66, 165, 240
EciI GGCGGA 2 cut(s) 45, 520
Eco130I CCWWGG 2 cut(s) 113, 429
Eco31I GGTCTC 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 113, 429
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 113, 429
FaeI CATG 3 cut(s) 216, 343, 379
FaiI YATR 7 cut(s) 214, 235, 237, 326, 341, 377, 417
FaqI GGGAC 1 cut(s) 414
FatI CATG 3 cut(s) 212, 339, 375
FauNDI CATATG 1 cut(s) 235
FspI TGCGCA 1 cut(s) 260
GlaI GCGC 1 cut(s) 260
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 1 cut(s) 338
HapII CCGG 1 cut(s) 38
HhaI GCGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 216, 343, 379
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 2 cut(s) 402, 508
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 140, 474
Hpy188III TCNNGA 2 cut(s) 162, 512
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 3 cut(s) 51, 391, 482
HpyCH4V TGCA 7 cut(s) 100, 130, 154, 233, 272, 289, 375
HpyF3I CTNAG 2 cut(s) 383, 495
Hsp92II CATG 3 cut(s) 216, 343, 379
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 1 cut(s) 487
LpnPI CCDG 6 cut(s) 51, 263, 365, 383, 485, 497
LweI GCATC 1 cut(s) 144
MalI GATC 1 cut(s) 489
MboI GATC 1 cut(s) 487
MboII GAAGA 7 cut(s) 26, 53, 114, 182, 257, 325, 328
MluCI AATT 5 cut(s) 30, 189, 298, 321, 515
MlyI GAGTC 1 cut(s) 396
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 9 cut(s) 16, 19, 69, 166, 195, 214, 257, 316, 378
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 4 cut(s) 33, 198, 411, 459
MseI TTAA 1 cut(s) 8
MspI CCGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 235
NdeII GATC 1 cut(s) 487
NlaIII CATG 3 cut(s) 216, 343, 379
NlaIV GGNNCC 1 cut(s) 337
NsbI TGCGCA 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 216
PciI ACATGT 1 cut(s) 212
PdmI GAANNNNTTC 4 cut(s) 33, 198, 411, 459
PfeI GAWTC 1 cut(s) 508
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PscI ACATGT 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 336
RsaI GTAC 2 cut(s) 68, 356
RsaNI GTAC 2 cut(s) 67, 355
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 1 cut(s) 487
Sau96I GGNCC 1 cut(s) 336
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 1 cut(s) 396
SetI ASST 6 cut(s) 81, 115, 279, 414, 431, 529
SfaNI GCATC 1 cut(s) 144
Sse9I AATT 5 cut(s) 30, 189, 298, 321, 515
SsiI CCGC 2 cut(s) 56, 505
StyI CCWWGG 2 cut(s) 113, 429
TaaI ACNGT 3 cut(s) 51, 391, 482
TaqI TCGA 2 cut(s) 163, 405
TasI AATT 5 cut(s) 30, 189, 298, 321, 515
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 5 cut(s) 56, 132, 377, 396, 402
TspDTI ATGAA 1 cut(s) 404
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 5 cut(s) 56, 132, 377, 396, 402
VspI ATTAAT 1 cut(s) 8
XapI RAATTY 1 cut(s) 30
XceI RCATGY 1 cut(s) 216
XmnI GAANNNNTTC 4 cut(s) 33, 198, 411, 459
ZrmI AGTACT 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.