Rorug05G0502100

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
68390783 .. 68391214
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0502100.1

Sequence Viewer

Length: 432 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCTAACTATAGAGCAGGTACAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGTCTCGGGAGAAGCAGAAGAAGAGGTCCACTTCCGATGTTCATGTGCCCATGCAAAGATCAGGGTTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

16.35

Weight (kDa)

9.51

Isoelectric Point (pI)

65.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 3.8e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 78, 394
Acc36I ACCTGC 3 cut(s) 78, 160, 394
AciI CCGC 2 cut(s) 82, 402
AclWI GGATC 3 cut(s) 188, 363, 382
AfaI GTAC 2 cut(s) 174, 203
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 2 cut(s) 130, 193
AluI AGCT 2 cut(s) 130, 193
Alw26I GTCTC 2 cut(s) 191, 258
AlwI GGATC 3 cut(s) 188, 363, 382
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 335
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
BaeGI GKGCMC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 191, 258
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 3 cut(s) 78, 160, 394
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 2 cut(s) 6, 155
BmrFI CCNGG 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 37
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 191, 258
BsmFI GGGAC 1 cut(s) 139
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 6 cut(s) 106, 180, 210, 308, 355, 374
BspACI CCGC 2 cut(s) 82, 402
BspLI GGNNCC 2 cut(s) 6, 155
BspMI ACCTGC 3 cut(s) 78, 160, 394
BspPI GGATC 3 cut(s) 188, 363, 382
BspTNI GGTCTC 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 6 cut(s) 106, 180, 210, 308, 355, 374
Bst6I CTCTTC 1 cut(s) 266
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 6 cut(s) 109, 183, 213, 311, 358, 377
BstMAI GTCTC 2 cut(s) 191, 258
BstMBI GATC 6 cut(s) 106, 180, 210, 308, 355, 374
BstMWI GCNNNNNNNGC 2 cut(s) 79, 401
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 2 cut(s) 180, 374
BstYI RGATCY 2 cut(s) 180, 374
BtsCI GGATG 1 cut(s) 37
BveI ACCTGC 3 cut(s) 78, 160, 394
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 2 cut(s) 173, 202
CviAII CATG 4 cut(s) 70, 293, 301, 350
CviJI RGCY 3 cut(s) 53, 130, 193
CviKI_1 RGCY 3 cut(s) 53, 130, 193
CviQI GTAC 2 cut(s) 173, 202
DpnI GATC 6 cut(s) 108, 182, 212, 310, 357, 376
DpnII GATC 6 cut(s) 106, 180, 210, 308, 355, 374
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 153, 276
Eco88I CYCGRG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 153
FaeI CATG 4 cut(s) 73, 296, 304, 353
FaiI YATR 8 cut(s) 71, 111, 113, 164, 294, 302, 351, 363
FaqI GGGAC 1 cut(s) 139
FatI CATG 4 cut(s) 69, 292, 300, 349
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 54
Hin1II CATG 4 cut(s) 73, 296, 304, 353
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 3 cut(s) 93, 244, 279
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 3 cut(s) 220, 241, 257
Hpy8I GTNNAC 3 cut(s) 93, 244, 279
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 304, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 401
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 4 cut(s) 73, 296, 304, 353
Kzo9I GATC 6 cut(s) 106, 180, 210, 308, 355, 374
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 8 cut(s) 29, 67, 73, 155, 203, 297, 390, 399
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 334
MalI GATC 6 cut(s) 108, 182, 212, 310, 357, 376
MboI GATC 6 cut(s) 106, 180, 210, 308, 355, 374
MboII GAAGA 4 cut(s) 280, 283, 369, 390
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 2 cut(s) 180, 374
MhlI GDGCHC 1 cut(s) 300
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 6 cut(s) 22, 29, 131, 171, 267, 346
MseI TTAA 2 cut(s) 366, 423
MspA1I CMGCKG 2 cut(s) 193, 404
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
MunI CAATTG 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 79, 401
NciI CCSGG 1 cut(s) 55
NdeII GATC 6 cut(s) 106, 180, 210, 308, 355, 374
NlaIII CATG 4 cut(s) 73, 296, 304, 353
NlaIV GGNNCC 2 cut(s) 6, 155
NspI RCATGY 1 cut(s) 73
PaqCI CACCTGC 2 cut(s) 78, 394
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 6, 155
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 374
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 2 cut(s) 174, 203
RsaNI GTAC 2 cut(s) 173, 202
SaqAI TTAA 2 cut(s) 366, 423
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 6 cut(s) 106, 180, 210, 308, 355, 374
Sau96I GGNCC 2 cut(s) 153, 276
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 300
SetI ASST 9 cut(s) 92, 132, 155, 174, 195, 228, 254, 278, 388
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 2 cut(s) 153, 276
Sse9I AATT 1 cut(s) 340
SsiI CCGC 2 cut(s) 82, 402
StyD4I CCNGG 1 cut(s) 53
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 340
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 2 cut(s) 366, 423
Tru9I TTAA 2 cut(s) 366, 423
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.