Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002197.1

Orthogroup ID

OG0000110

Physical Location & Seq

Genomic Coordinates Forward (+)

122821 .. 125110

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002197.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

atggcttcagctgcaatagaccttttgcttgggaaaatagtgtcatttcttgacgaccaattgtcactgttaggaggagttcatgatgaacttgaagaaatcaagcgtgagcttatagacatgaaagccttcttggaggatgcagaaagaaccagtgttctcagtgaagtggagaaaacatgggtggcgaatgtgagggacgtatccgtaaacgttgtagacttcattgacgagttcacctaccacatcaacaaccagagaagttggagtccatttacaagaacgcttcgtaaatcccttcgcttccctaagaatctttgggagaggcatcgggagtcatctcttttccttcaagatgatgaagtggtgggaattatagatgctaaagagaagttggtcacaatgttgttgtcttcacaagctcaaagaactgtgatttctgttgttggaatgggtggctctggcaagtctaccttggttgcaaagaccttcaatggccagactgtaaagcaacatttcgattgctgtgcgtggattactgtctcgcaaacgtacacggttgaagatctactcagagtaatcatgaaggagcttctccgagcagtgaaggagcagattccagtagacttgagcgacatgagctattcacatttggtggaaatgctggccagctatttgaaggaaaagaggtacatgattgtcttagatgatgtgtgggatatcaatctttggagaaaaataagtgcggcacttccagatggaccacatggaagccgggtcatgcttacaactcgtaaagaagacattgcttcttttccatatgggcttggaagttatgtccaccatgttcagcctctaaacaagagtgaggcgtggcttcttttttccatgaaagctttcttcagttgtcctaatagctgtggtccaactgagctcgaacatatagctagagatcttgttgacaaatgcgaaggcttacctctaggaattgttgctttgggcgctctcatgtcaaccaaaagtgttctgtccgagtggatgaaggtttacggcagcttgaactgggagctatgcaacaaccctaggcttgaagtggtgaagagcatcttactgttgagcttcaatgatttaccatatcggctaaagcattgcttcctatattgttgtgttttcctcgaagattatgtgatccagtgtagaaggcttattagactgtggatagcggaggggtttgtggaacaagttagaggtgctaagacagaagagatagctgagagctacatggcggagctcacgtgtcgatgcatgcttcaagtagttgagagggaaccatctgggagggcagaaacatttaggatgcatgatcttctgcgagaactctgcatttcaatttcagaagctgagaacttttgtaccatatacaatgaccaagaaccagctaaagagagcaaggctcgccgcgtgtcaatgcaagcgaattctcgagcactaagaaatccgaaagacatttcgaaggttcgcacatttttcatgtttgctgctttttcattgaattatctgccatctggtttccaactgttgagaattctagaccttgaagatgttccgattgtgcagttgccagatgacatagtgaactgcttcaaattgatgtatttaaatttgagaagcacaaaagttaaagagcttcccaaagacatagggaaactcagcaacttagaaatgctaaacataagcaattcgaaaattagattacttccggttgggattttgaagttacagaagctacaccatctcttgatgttgcattttaatgatcaaaagttgtgttcttttgattgtcttgacggctgcacacaagctccgccgggcatttgtaagctaaagagcttacaagttctggatacagtcaacgtggaaggcgagttgatcgaacaacttcagtccatgacgcaactcacaagacttggcttagcaaatgtgagggaagctgatgaaaaagatctatgcaaggcgctcgaaaacatgaaactcattgagcagttgaatgtcatgacaaccgatgaggatgaggtattgcgcatggacgcattagcggagggtcctccaatgctcaacacacttttcctaactggaaagttagagaggattccactt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

719

Amino Acids

81.97

Weight (kDa)

5.7

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07040
fragaria_vesca	FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica	MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica	Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis	pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis	RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata	RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora	Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii	Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa	Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha	Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana	Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2081
AccI	GTMKAC	3 cut(s)	219, 470, 624
AccII	CGCG	1 cut(s)	1461
AciI	CCGC	6 cut(s)	746, 1223, 1286, 1459, 1865, 2096
AclI	AACGTT	1 cut(s)	213
AclWI	GGATC	1 cut(s)	1183
AcoI	YGGCCR	2 cut(s)	496, 666
AcsI	RAATTY	3 cut(s)	1477, 1584, 1660
AcuI	CTGAAG	2 cut(s)	886, 1925
AcvI	CACGTG	1 cut(s)	1296
AfaI	GTAC	3 cut(s)	554, 692, 1414
AflIII	ACRYGT	1 cut(s)	1295
AhdI	GACNNNNNGTC	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
Alw21I	GWGCWC	3 cut(s)	936, 1293, 1489
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	1 cut(s)	1183
AlwNI	CAGNNNCTG	1 cut(s)	1400
Ama87I	CYCGRG	1 cut(s)	1482
AoxI	GGCC	2 cut(s)	496, 666
ApeKI	GCWGC	4 cut(s)	11, 1053, 1538, 1851
ApoI	RAATTY	3 cut(s)	1477, 1584, 1660
Asp700I	GAANNNNTTC	5 cut(s)	128, 896, 1602, 1640, 1938
AspA2I	CCTAGG	1 cut(s)	1082
AspLEI	GCGC	3 cut(s)	1004, 2017, 2082
AspS9I	GGNCC	3 cut(s)	761, 923, 2102
AsuC2I	CCSGG	2 cut(s)	776, 1869
AsuHPI	GGTGA	2 cut(s)	229, 1108
AsuII	TTCGAA	2 cut(s)	1511, 1742
AvaI	CYCGRG	1 cut(s)	1482
AvaII	GGWCC	3 cut(s)	761, 923, 2102
AvrII	CCTAGG	1 cut(s)	1082
BaeI	ACNNNNGTAYC	2 cut(s)	1396, 1429
BalI	TGGCCA	2 cut(s)	498, 668
BanII	GRGCYC	2 cut(s)	936, 1293
BbrPI	CACGTG	1 cut(s)	1296
BbsI	GAAGAC	2 cut(s)	405, 807
Bbv12I	GWGCWC	3 cut(s)	936, 1293, 1489
BbvI	GCAGC	3 cut(s)	1065, 1525, 1838
BccI	CCATC	4 cut(s)	752, 1339, 1570, 1800
BceAI	ACGGC	2 cut(s)	1066, 1864
BcgI	CGANNNNNNTGC	6 cut(s)	509, 543, 1362, 1396, 1999, 2033
BciVI	GTATCC	2 cut(s)	214, 1897
BclI	TGATCA	1 cut(s)	1816
BcnI	CCSGG	2 cut(s)	776, 1869
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	4 cut(s)	948, 983, 1083, 1589
BfoI	RGCGCY	2 cut(s)	1005, 2018
BfuI	GTATCC	2 cut(s)	214, 1897
BglII	AGATCT	3 cut(s)	565, 952, 2002
BisI	GCNGC	6 cut(s)	12, 747, 1054, 1459, 1539, 1852
BlnI	CCTAGG	1 cut(s)	1082
BlpI	GCTNAGC	1 cut(s)	1972
BlsI	GCNGC	6 cut(s)	13, 748, 1055, 1460, 1540, 1853
Bme1390I	CCNGG	2 cut(s)	776, 1869
Bme18I	GGWCC	3 cut(s)	761, 923, 2102
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	1482
BmgT120I	GGNCC	3 cut(s)	761, 923, 2102
BmiI	GGNNCC	2 cut(s)	1329, 2103
BmrFI	CCNGG	2 cut(s)	776, 1869
BmrI	ACTGGG	1 cut(s)	1072
BmsI	GCATC	6 cut(s)	130, 337, 370, 1113, 1292, 1347
BmuI	ACTGGG	1 cut(s)	1072
BpiI	GAAGAC	2 cut(s)	405, 807
BplI	GAGNNNNNCTC	2 cut(s)	1438, 1470
Bpu1102I	GCTNAGC	1 cut(s)	1972
Bpu14I	TTCGAA	2 cut(s)	1511, 1742
BpuEI	CTTGAG	1 cut(s)	649
BpuMI	CCSGG	2 cut(s)	776, 1869
BsaAI	YACGTR	1 cut(s)	1296
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	2 cut(s)	474, 1082
BsaWI	WCCGGW	1 cut(s)	1759
BsaXI	ACNNNNNCTCC	4 cut(s)	1280, 1310, 1846, 1876
Bse1I	ACTGG	5 cut(s)	153, 620, 1067, 1192, 2137
Bse3DI	GCAATG	2 cut(s)	804, 1147
Bse8I	GATNNNNATC	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	474, 1082
BseGI	GGATG	4 cut(s)	145, 1044, 1362, 2074
BseJI	GATNNNNATC	1 cut(s)	723
BseMI	GCAATG	2 cut(s)	804, 1147
BseMII	CTCAG	6 cut(s)	175, 586, 921, 1263, 1392, 1723
BseNI	ACTGG	5 cut(s)	153, 620, 1067, 1192, 2137
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	1065, 1525, 1838
BsgI	GTGCAG	2 cut(s)	1634, 1837
Bsh1236I	CGCG	1 cut(s)	1461
BshFI	GGCC	2 cut(s)	498, 668
BsiHKAI	GWGCWC	3 cut(s)	936, 1293, 1489
BsiHKCI	CYCGRG	1 cut(s)	1482
BsiSI	CCGG	3 cut(s)	775, 1760, 1868
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	498, 668
BsoBI	CYCGRG	1 cut(s)	1482
Bsp119I	TTCGAA	2 cut(s)	1511, 1742
Bsp1286I	GDGCHC	3 cut(s)	936, 1293, 1489
Bsp143I	GATC	7 cut(s)	565, 952, 1188, 1363, 1816, 1929, 2002
Bsp1720I	GCTNAGC	1 cut(s)	1972
BspACI	CCGC	6 cut(s)	746, 1223, 1286, 1459, 1865, 2096
BspANI	GGCC	2 cut(s)	498, 668
BspCNI	CTCAG	6 cut(s)	174, 585, 922, 1264, 1393, 1722
BspFNI	CGCG	1 cut(s)	1461
BspHI	TCATGA	3 cut(s)	82, 582, 2052
BspLI	GGNNCC	2 cut(s)	1329, 2103
BspPI	GGATC	1 cut(s)	1183
BspQI	GCTCTTC	1 cut(s)	1094
BspT104I	TTCGAA	2 cut(s)	1511, 1742
BsrDI	GCAATG	2 cut(s)	804, 1147
BsrI	ACTGG	5 cut(s)	153, 620, 1067, 1192, 2137
BssECI	CCNNGG	2 cut(s)	474, 1082
BssMI	GATC	7 cut(s)	565, 952, 1188, 1363, 1816, 1929, 2002
BssT1I	CCWWGG	2 cut(s)	474, 1082
Bst4CI	ACNGT	9 cut(s)	69, 433, 505, 541, 559, 1113, 1215, 1578, 1909
Bst6I	CTCTTC	2 cut(s)	1094, 1257
BstBAI	YACGTR	1 cut(s)	1296
BstBI	TTCGAA	2 cut(s)	1511, 1742
BstC8I	GCNNGC	5 cut(s)	666, 670, 1307, 1456, 1473
BstF5I	GGATG	4 cut(s)	145, 1044, 1362, 2074
BstFNI	CGCG	1 cut(s)	1461
BstH2I	RGCGCY	2 cut(s)	1005, 2018
BstHHI	GCGC	3 cut(s)	1004, 2017, 2082
BstKTI	GATC	7 cut(s)	568, 955, 1191, 1366, 1819, 1932, 2005
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	7 cut(s)	565, 952, 1188, 1363, 1816, 1929, 2002
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 639, 1001, 1455
BstNSI	RCATGY	1 cut(s)	1309
BstSCI	CCNGG	2 cut(s)	774, 1867
BstUI	CGCG	1 cut(s)	1461
BstV1I	GCAGC	3 cut(s)	1065, 1525, 1838
BstV2I	GAAGAC	2 cut(s)	405, 807
BstX2I	RGATCY	3 cut(s)	565, 952, 2002
BstYI	RGATCY	3 cut(s)	565, 952, 2002
BsuI	GTATCC	2 cut(s)	214, 1897
BsuRI	GGCC	2 cut(s)	498, 668
BtsCI	GGATG	4 cut(s)	145, 1044, 1362, 2074
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	5 cut(s)	65, 160, 169, 609, 1199
Cac8I	GCNNGC	5 cut(s)	666, 670, 1307, 1456, 1473
CaiI	CAGNNNCTG	1 cut(s)	1400
CciI	TCATGA	3 cut(s)	82, 582, 2052
CfoI	GCGC	3 cut(s)	1004, 2017, 2082
Cfr13I	GGNCC	3 cut(s)	761, 923, 2102
CseI	GACGC	2 cut(s)	1960, 2096
Csp6I	GTAC	3 cut(s)	553, 691, 1413
CviQI	GTAC	3 cut(s)	553, 691, 1413
DpnI	GATC	7 cut(s)	567, 954, 1190, 1365, 1818, 1931, 2004
DpnII	GATC	7 cut(s)	565, 952, 1188, 1363, 1816, 1929, 2002
DraI	TTTAAA	1 cut(s)	1659
DriI	GACNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	2 cut(s)	496, 666
Eam1104I	CTCTTC	2 cut(s)	1094, 1257
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	2 cut(s)	1094, 1257
EciI	GGCGGA	2 cut(s)	1301, 1854
Ecl136II	GAGCTC	2 cut(s)	934, 1291
Eco130I	CCWWGG	2 cut(s)	474, 1082
Eco24I	GRGCYC	2 cut(s)	936, 1293
Eco32I	GATATC	1 cut(s)	721
Eco47I	GGWCC	3 cut(s)	761, 923, 2102
Eco53kI	GAGCTC	2 cut(s)	934, 1291
Eco57I	CTGAAG	2 cut(s)	886, 1925
Eco72I	CACGTG	1 cut(s)	1296
Eco88I	CYCGRG	1 cut(s)	1482
EcoICRI	GAGCTC	2 cut(s)	934, 1291
EcoO109I	RGGNCCY	1 cut(s)	2102
EcoRI	GAATTC	2 cut(s)	1477, 1584
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	474, 1082
EcoT22I	ATGCAT	2 cut(s)	1307, 1362
EcoT38I	GRGCYC	2 cut(s)	936, 1293
ErhI	CCWWGG	2 cut(s)	474, 1082
FalI	AAGNNNNNCTT	6 cut(s)	458, 490, 1091, 1123, 1136, 1168
FaqI	GGGAC	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	1816
FblI	GTMKAC	3 cut(s)	219, 470, 624
Fnu4HI	GCNGC	6 cut(s)	12, 747, 1054, 1459, 1539, 1852
FokI	GGATG	4 cut(s)	152, 1051, 1369, 2081
FriOI	GRGCYC	2 cut(s)	936, 1293
Fsp4HI	GCNGC	6 cut(s)	12, 747, 1054, 1459, 1539, 1852
FspBI	CTAG	4 cut(s)	948, 983, 1083, 1589
FspI	TGCGCA	1 cut(s)	2081
GlaI	GCGC	3 cut(s)	1003, 2016, 2081
GluI	GCNGC	6 cut(s)	12, 747, 1054, 1459, 1539, 1852
HaeII	RGCGCY	2 cut(s)	1005, 2018
HaeIII	GGCC	2 cut(s)	498, 668
HapII	CCGG	3 cut(s)	775, 1760, 1868
HgaI	GACGC	2 cut(s)	1960, 2096
HhaI	GCGC	3 cut(s)	1004, 2017, 2082
Hin6I	GCGC	3 cut(s)	1002, 2015, 2080
HinP1I	GCGC	3 cut(s)	1002, 2015, 2080
HincII	GTYRAC	3 cut(s)	961, 1014, 1912
HindII	GTYRAC	3 cut(s)	961, 1014, 1912
HindIII	AAGCTT	1 cut(s)	894
HinfI	GANTC	5 cut(s)	268, 313, 335, 616, 2149
HpaII	CCGG	3 cut(s)	775, 1760, 1868
HphI	GGTGA	2 cut(s)	229, 1108
Hpy188I	TCNGA	6 cut(s)	575, 599, 1033, 1396, 1500, 1608
HpyCH4III	ACNGT	9 cut(s)	69, 433, 505, 541, 559, 1113, 1215, 1578, 1909
HpyCH4IV	ACGT	5 cut(s)	201, 213, 551, 1295, 1914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 639, 1001, 1455
HpySE526I	ACGT	5 cut(s)	201, 213, 551, 1295, 1914
HspAI	GCGC	3 cut(s)	1002, 2015, 2080
Ksp22I	TGATCA	1 cut(s)	1816
Kzo9I	GATC	7 cut(s)	565, 952, 1188, 1363, 1816, 1929, 2002
LguI	GCTCTTC	1 cut(s)	1094
LmnI	GCTCC	5 cut(s)	589, 610, 1066, 1288, 1867
Lsp1109I	GCAGC	3 cut(s)	1065, 1525, 1838
LweI	GCATC	6 cut(s)	130, 337, 370, 1113, 1292, 1347
MaeI	CTAG	4 cut(s)	948, 983, 1083, 1589
MaeII	ACGT	5 cut(s)	201, 213, 551, 1295, 1914
MaeIII	GTNAC	3 cut(s)	63, 397, 1776
MalI	GATC	7 cut(s)	567, 954, 1190, 1365, 1818, 1931, 2004
MboI	GATC	7 cut(s)	565, 952, 1188, 1363, 1816, 1929, 2002
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	3 cut(s)	565, 952, 2002
MhlI	GDGCHC	3 cut(s)	936, 1293, 1489
MlsI	TGGCCA	2 cut(s)	498, 668
MluNI	TGGCCA	2 cut(s)	498, 668
MlyI	GAGTC	2 cut(s)	277, 344
MmeI	TCCRAC	4 cut(s)	245, 427, 950, 1597
Mox20I	TGGCCA	2 cut(s)	498, 668
Mph1103I	ATGCAT	2 cut(s)	1307, 1362
MroXI	GAANNNNTTC	5 cut(s)	128, 896, 1602, 1640, 1938
MscI	TGGCCA	2 cut(s)	498, 668
MseI	TTAA	3 cut(s)	1658, 1680, 1812
MslI	CAYNNNNRTG	1 cut(s)	1812
Msp20I	TGGCCA	2 cut(s)	498, 668
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	3 cut(s)	775, 1760, 1868
MspR9I	CCNGG	2 cut(s)	776, 1869
MunI	CAATTG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	1461
MwoI	GCNNNNNNNGC	4 cut(s)	11, 639, 1001, 1455
NciI	CCSGG	2 cut(s)	776, 1869
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	7 cut(s)	565, 952, 1188, 1363, 1816, 1929, 2002
NlaIV	GGNNCC	2 cut(s)	1329, 2103
NmuCI	GTSAC	2 cut(s)	63, 397
NsbI	TGCGCA	1 cut(s)	2081
NsiI	ATGCAT	2 cut(s)	1307, 1362
NspI	RCATGY	1 cut(s)	1309
NspV	TTCGAA	2 cut(s)	1511, 1742
PaeI	GCATGC	1 cut(s)	1309
PaeR7I	CTCGAG	1 cut(s)	1482
PagI	TCATGA	3 cut(s)	82, 582, 2052
PciSI	GCTCTTC	1 cut(s)	1094
PcsI	WCGNNNNNNNCGW	1 cut(s)	1920
PdmI	GAANNNNTTC	5 cut(s)	128, 896, 1602, 1640, 1938
PfeI	GAWTC	3 cut(s)	313, 616, 2149
PkrI	GCNGC	6 cut(s)	13, 748, 1055, 1460, 1540, 1853
PleI	GAGTC	2 cut(s)	276, 343
PmaCI	CACGTG	1 cut(s)	1296
PmlI	CACGTG	1 cut(s)	1296
PpsI	GAGTC	2 cut(s)	276, 343
Ppu21I	YACGTR	1 cut(s)	1296
PpuMI	RGGWCCY	1 cut(s)	2102
Psp124BI	GAGCTC	2 cut(s)	936, 1293
Psp1406I	AACGTT	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	2102
PspCI	CACGTG	1 cut(s)	1296
PspN4I	GGNNCC	2 cut(s)	1329, 2103
PspPI	GGNCC	3 cut(s)	761, 923, 2102
PspPPI	RGGWCCY	1 cut(s)	2102
PstNI	CAGNNNCTG	1 cut(s)	1400
PsuI	RGATCY	3 cut(s)	565, 952, 2002
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	3 cut(s)	554, 692, 1414
RsaNI	GTAC	3 cut(s)	553, 691, 1413
RseI	CAYNNNNRTG	1 cut(s)	1812
SacI	GAGCTC	2 cut(s)	936, 1293
SapI	GCTCTTC	1 cut(s)	1094
SaqAI	TTAA	3 cut(s)	1658, 1680, 1812
SatI	GCNGC	6 cut(s)	12, 747, 1054, 1459, 1539, 1852
Sau3AI	GATC	7 cut(s)	565, 952, 1188, 1363, 1816, 1929, 2002
Sau96I	GGNCC	3 cut(s)	761, 923, 2102
SchI	GAGTC	2 cut(s)	277, 344
ScrFI	CCNGG	2 cut(s)	776, 1869
SduI	GDGCHC	3 cut(s)	936, 1293, 1489
SfaNI	GCATC	6 cut(s)	130, 337, 370, 1113, 1292, 1347
Sfr274I	CTCGAG	1 cut(s)	1482
SfuI	TTCGAA	2 cut(s)	1511, 1742
SinI	GGWCC	3 cut(s)	761, 923, 2102
SlaI	CTCGAG	1 cut(s)	1482
SmiI	ATTTAAAT	1 cut(s)	1659
SmiMI	CAYNNNNRTG	1 cut(s)	1812
SmlI	CTYRAG	2 cut(s)	628, 1482
SmoI	CTYRAG	2 cut(s)	628, 1482
SphI	GCATGC	1 cut(s)	1309
SsiI	CCGC	6 cut(s)	746, 1223, 1286, 1459, 1865, 2096
SspMI	CTAG	4 cut(s)	948, 983, 1083, 1589
SstI	GAGCTC	2 cut(s)	936, 1293
StyD4I	CCNGG	2 cut(s)	774, 1867
StyI	CCWWGG	2 cut(s)	474, 1082
SwaI	ATTTAAAT	1 cut(s)	1659
TaaI	ACNGT	9 cut(s)	69, 433, 505, 541, 559, 1113, 1215, 1578, 1909
TaiI	ACGT	5 cut(s)	204, 216, 554, 1298, 1917
TaqI	TCGA	9 cut(s)	519, 936, 1176, 1300, 1483, 1511, 1742, 1932, 2019
TauI	GCSGC	2 cut(s)	749, 1461
TfiI	GAWTC	3 cut(s)	313, 616, 2149
Tru1I	TTAA	3 cut(s)	1658, 1680, 1812
Tru9I	TTAA	3 cut(s)	1658, 1680, 1812
TscAI	CASTG	5 cut(s)	72, 160, 169, 609, 1199
TseFI	GTSAC	2 cut(s)	63, 397
TseI	GCWGC	4 cut(s)	11, 1053, 1538, 1851
Tsp45I	GTSAC	2 cut(s)	63, 397
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	5 cut(s)	72, 160, 169, 609, 1199
VpaK11BI	GGWCC	3 cut(s)	761, 923, 2102
XapI	RAATTY	3 cut(s)	1477, 1584, 1660
XbaI	TCTAGA	1 cut(s)	1588
XceI	RCATGY	1 cut(s)	1309
XhoI	CTCGAG	1 cut(s)	1482
XmaJI	CCTAGG	1 cut(s)	1082
XmiI	GTMKAC	3 cut(s)	219, 470, 624
XmnI	GAANNNNTTC	5 cut(s)	128, 896, 1602, 1640, 1938
XspI	CTAG	4 cut(s)	948, 983, 1083, 1589
Zsp2I	ATGCAT	2 cut(s)	1307, 1362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.