Rmu_ssc0000187.1_g000022

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000187.1
OG0000110
Physical Location & Seq
Reverse (-)
110507 .. 111628
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000187.1_g000022.1.cds

Sequence Viewer

Length: 1122 bp
atggcgttagtggcccaagatctcttgcttggtaaaattgtagccattcttgagaacgaagtatccttcatagccagtgttcacgataaatttgatgacattaaacaagagattgtaatcatgaaagccttcctaaaggatgttgaggaaaagaaagcacaatcggagggaggggagacatggataacaagcgtgagagactctgtctatgacgttgaagatatcattgatgaattcacatatcacatctataagcaggggcgtggagttcaagttgcaaggtgtcttcgccaaacattttatattccaaagaatttttggtataggcgtcaaatcgctaaaaaattagacaaaatcaaaggaaccattaaagccttttcggagaggaatcagacatatggtgttagtgttgttactgctctagaaggaaagagtacttctcatgatcatattcaagaatggatgaggaaccgagcagaggcttctctctttaccaatgaagatgagcttgtcgggattgaagcccccaaaagagtattaatggaacatatagtgaatgaactgcaaagccaaagcatagtctccgtggttgggatgggaggatctgggaagaccactcttgttgcaaagatctttaacaatgacattgtaaagagacatttcaattgctatgcatgggttacagttacccaaacttatgtgattgaagacttatttagaagcttgatcaagcaattccatgaagcaaggaagaaggaggttccaagagacattgatatgatgagctttagagaattggtagagattcttgtgaactacttgaactcgaaaaagtatctagttgtgatggatgatgtatgggatataaatctttgggcacaaataagggtatcacttcaagatagacaacttggaagtcgagttgtactcaccactcgaaatgatgatatagcaagctatgcttttggagttgcaagccatgttcaccatattcaacccctgggaaagaagaacacttgggagcatttttccaattctctactcatcctaacaaatcttgtccacttgaacttgagccatttgctcgggaacttgtggggaagtgtaatggccttcctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

373

Amino Acids

42.9

Weight (kDa)

6.91

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 610
AcsI RAATTY 3 cut(s) 89, 233, 313
AcyI GRCGYC 1 cut(s) 328
AfaI GTAC 2 cut(s) 436, 927
AfiI CCNNNNNNNGG 2 cut(s) 478, 591
AjnI CCWGG 1 cut(s) 999
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 4 cut(s) 508, 723, 786, 957
AluI AGCT 4 cut(s) 508, 723, 786, 957
Alw26I GTCTC 5 cut(s) 170, 192, 586, 649, 762
AlwI GGATC 1 cut(s) 610
Ama87I CYCGRG 1 cut(s) 1085
AoxI GGCC 2 cut(s) 12, 1110
ApoI RAATTY 3 cut(s) 89, 233, 313
AseI ATTAAT 1 cut(s) 539
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 922, 977
AvaI CYCGRG 1 cut(s) 1085
BaeGI GKGCMC 1 cut(s) 880
BbsI GAAGAC 3 cut(s) 278, 617, 714
BccI CCATC 2 cut(s) 589, 841
BciT130I CCWGG 1 cut(s) 1001
BciVI GTATCC 1 cut(s) 73
BclI TGATCA 2 cut(s) 445, 726
BcoDI GTCTC 5 cut(s) 170, 192, 586, 649, 762
BfaI CTAG 3 cut(s) 422, 839, 1120
BfuI GTATCC 1 cut(s) 73
BglII AGATCT 2 cut(s) 19, 630
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 1 cut(s) 1001
BmeT110I CYCGRG 1 cut(s) 1085
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 3 cut(s) 364, 470, 762
BmrFI CCNGG 1 cut(s) 1001
BpiI GAAGAC 3 cut(s) 278, 617, 714
BplI GAGNNNNNCTC 4 cut(s) 424, 456, 912, 944
BpuEI CTTGAG 2 cut(s) 71, 1093
BsaBI GATNNNNATC 2 cut(s) 116, 867
BsaHI GRCGYC 1 cut(s) 328
BsaJI CCNNGG 3 cut(s) 585, 999, 1000
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 591
Bse1I ACTGG 1 cut(s) 75
Bse8I GATNNNNATC 2 cut(s) 116, 867
BseBI CCWGG 1 cut(s) 1001
BseDI CCNNGG 3 cut(s) 585, 999, 1000
BseGI GGATG 5 cut(s) 145, 468, 600, 856, 1044
BseJI GATNNNNATC 2 cut(s) 116, 867
BseLI CCNNNNNNNGG 2 cut(s) 478, 591
BseNI ACTGG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 880
BshFI GGCC 2 cut(s) 14, 1112
BsiHKCI CYCGRG 1 cut(s) 1085
BslI CCNNNNNNNGG 2 cut(s) 478, 591
BsmAI GTCTC 5 cut(s) 170, 192, 586, 649, 762
BsnI GGCC 2 cut(s) 14, 1112
BsoBI CYCGRG 1 cut(s) 1085
Bsp1286I GDGCHC 1 cut(s) 880
Bsp143I GATC 5 cut(s) 19, 445, 602, 630, 726
BspANI GGCC 2 cut(s) 14, 1112
BspHI TCATGA 2 cut(s) 120, 442
BspLI GGNNCC 3 cut(s) 364, 470, 762
BspPI GGATC 1 cut(s) 610
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 3 cut(s) 585, 999, 1000
BssMI GATC 5 cut(s) 19, 445, 602, 630, 726
BssNI GRCGYC 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 1001
Bst4CI ACNGT 1 cut(s) 685
BstACI GRCGYC 1 cut(s) 328
BstAPI GCANNNNNTGC 1 cut(s) 959
BstC8I GCNNGC 2 cut(s) 955, 976
BstDSI CCRYGG 1 cut(s) 585
BstF5I GGATG 5 cut(s) 145, 468, 600, 856, 1044
BstKTI GATC 5 cut(s) 22, 448, 605, 633, 729
BstMAI GTCTC 5 cut(s) 170, 192, 586, 649, 762
BstMBI GATC 5 cut(s) 19, 445, 602, 630, 726
BstMWI GCNNNNNNNGC 2 cut(s) 11, 959
BstNI CCWGG 1 cut(s) 1001
BstSCI CCNGG 1 cut(s) 999
BstSLI GKGCMC 1 cut(s) 880
BstV2I GAAGAC 3 cut(s) 278, 617, 714
BstX2I RGATCY 3 cut(s) 19, 602, 630
BstYI RGATCY 3 cut(s) 19, 602, 630
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 2 cut(s) 14, 1112
BtgI CCRYGG 1 cut(s) 585
BtsCI GGATG 5 cut(s) 145, 468, 600, 856, 1044
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 955, 976
CciI TCATGA 2 cut(s) 120, 442
Cfr13I GGNCC 1 cut(s) 13
CseI GACGC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 435, 926
CspCI CAANNNNNGTGG 2 cut(s) 604, 639
CviAII CATG 6 cut(s) 121, 180, 443, 675, 740, 980
CviQI GTAC 2 cut(s) 435, 926
DpnI GATC 5 cut(s) 21, 447, 604, 632, 728
DpnII GATC 5 cut(s) 19, 445, 602, 630, 726
Eco32I GATATC 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 1085
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 999
EcoRV GATATC 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 676
FaeI CATG 6 cut(s) 124, 183, 446, 678, 743, 983
FalI AAGNNNNNCTT 4 cut(s) 492, 524, 946, 978
FatI CATG 6 cut(s) 120, 179, 442, 674, 739, 979
FauNDI CATATG 1 cut(s) 397
FbaI TGATCA 2 cut(s) 445, 726
FokI GGATG 5 cut(s) 152, 475, 607, 863, 1031
FspBI CTAG 3 cut(s) 422, 839, 1120
HaeIII GGCC 2 cut(s) 14, 1112
HgaI GACGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 328
Hin1II CATG 6 cut(s) 124, 183, 446, 678, 743, 983
HindIII AAGCTT 1 cut(s) 721
HinfI GANTC 3 cut(s) 200, 388, 805
HphI GGTGA 2 cut(s) 922, 977
Hpy166II GTNNAC 4 cut(s) 82, 814, 985, 1063
Hpy188I TCNGA 3 cut(s) 166, 382, 393
Hpy188III TCNNGA 9 cut(s) 50, 83, 121, 422, 443, 455, 514, 899, 1087
Hpy8I GTNNAC 4 cut(s) 82, 814, 985, 1063
HpyAV CCTTC 4 cut(s) 76, 139, 419, 748
HpyCH4III ACNGT 1 cut(s) 685
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 5 cut(s) 278, 565, 626, 674, 974
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 959
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 328
Hsp92II CATG 6 cut(s) 124, 183, 446, 678, 743, 983
Ksp22I TGATCA 2 cut(s) 445, 726
Kzo9I GATC 5 cut(s) 19, 445, 602, 630, 726
LmnI GCTCC 1 cut(s) 1021
LpnPI CCDG 5 cut(s) 88, 242, 591, 986, 1013
MaeI CTAG 3 cut(s) 422, 839, 1120
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 3 cut(s) 412, 679, 685
MalI GATC 5 cut(s) 21, 447, 604, 632, 728
MboI GATC 5 cut(s) 19, 445, 602, 630, 726
MboII GAAGA 7 cut(s) 230, 278, 512, 622, 719, 763, 1021
MfeI CAATTG 1 cut(s) 664
MflI RGATCY 3 cut(s) 19, 602, 630
MhlI GDGCHC 1 cut(s) 880
MluCI AATT 9 cut(s) 36, 89, 233, 313, 344, 664, 734, 794, 1033
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 8 cut(s) 139, 160, 164, 378, 459, 472, 593, 751
Mph1103I ATGCAT 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 4 cut(s) 102, 369, 539, 636
MslI CAYNNNNRTG 1 cut(s) 776
MspR9I CCNGG 1 cut(s) 1001
MunI CAATTG 1 cut(s) 664
MvaI CCWGG 1 cut(s) 1001
MwoI GCNNNNNNNGC 2 cut(s) 11, 959
NdeI CATATG 1 cut(s) 397
NdeII GATC 5 cut(s) 19, 445, 602, 630, 726
NlaIII CATG 6 cut(s) 124, 183, 446, 678, 743, 983
NlaIV GGNNCC 3 cut(s) 364, 470, 762
NsiI ATGCAT 1 cut(s) 676
PagI TCATGA 2 cut(s) 120, 442
PasI CCCWGGG 1 cut(s) 1000
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 388, 805
PflFI GACNNNGTC 1 cut(s) 203
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 999
PspGI CCWGG 1 cut(s) 999
PspN4I GGNNCC 3 cut(s) 364, 470, 762
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 3 cut(s) 19, 602, 630
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 2 cut(s) 436, 927
RsaNI GTAC 2 cut(s) 435, 926
RseI CAYNNNNRTG 1 cut(s) 776
SaqAI TTAA 4 cut(s) 102, 369, 539, 636
Sau3AI GATC 5 cut(s) 19, 445, 602, 630, 726
Sau96I GGNCC 1 cut(s) 13
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 1001
SduI GDGCHC 1 cut(s) 880
SetI ASST 7 cut(s) 216, 284, 510, 725, 762, 788, 959
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 50, 1072
SmoI CTYRAG 2 cut(s) 50, 1072
Sse9I AATT 9 cut(s) 36, 89, 233, 313, 344, 664, 734, 794, 1033
SspMI CTAG 3 cut(s) 422, 839, 1120
StyD4I CCNGG 1 cut(s) 999
TaaI ACNGT 1 cut(s) 685
TaiI ACGT 1 cut(s) 216
TaqI TCGA 3 cut(s) 827, 919, 937
TasI AATT 9 cut(s) 36, 89, 233, 313, 344, 664, 734, 794, 1033
TatI WGTACW 2 cut(s) 434, 925
TfiI GAWTC 2 cut(s) 388, 805
Tru1I TTAA 4 cut(s) 102, 369, 539, 636
Tru9I TTAA 4 cut(s) 102, 369, 539, 636
TscAI CASTG 1 cut(s) 82
TspDTI ATGAA 6 cut(s) 58, 137, 246, 513, 573, 756
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 1 cut(s) 82
Tth111I GACNNNGTC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 539
XapI RAATTY 3 cut(s) 89, 233, 313
XbaI TCTAGA 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 3 cut(s) 422, 839, 1120
ZrmI AGTACT 1 cut(s) 436
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.