Rorug06G0115000

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
15695743 .. 15696567
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0115000.1

Sequence Viewer

Length: 546 bp
ATGTTCTCCAATTCTCTGCTCTTCTCAAGTGGTTGTGTTGAATATTGCCAGTGTTCATCAAATTCTCCAGTAAGTCGTGAGTATTCTCTTGAACATGCTCTAGAGCGCGTAAACTCTTCATCCAAAGGAAAGAATGAAGACTCCAGTATTGCAAATATATGCATCAGGACCATCGAGCTGATGGATAGGACCATAGTTATAGCAGTACATGGAAATGCAACATTGCAGACCCAAACGACCAACTTTGGAACATGGAACCCTGGCAAATATGGGAATCAAGAGATATCTGGATCTTCAGGAACATCAAACAGCGTCCTGTCAAGGCTGCCTCTGTTTGCAAGCTCAAGGAATATTGGCAGAACTGGGGTGCATCTTGTGAGCTTCATGCTCCCTGTGAAGGTTACAGCCATGAACGACAATTGCTCGGAGATTATGATAGAAGTTGACTCCAAGACTATCACTGATTATGTTAGTAGGAGCTGCTCTAGTATCCCTTTGGAGATTAACATCCATTGTCAAAGATCTCAAGCATCTGTTCCAAGATGA

Protein Analysis

181

Amino Acids

19.75

Weight (kDa)

6.88

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AclWI GGATC 1 cut(s) 298
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 397
AgsI TTSAA 2 cut(s) 41, 92
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 4 cut(s) 178, 342, 381, 480
AluI AGCT 4 cut(s) 178, 342, 381, 480
AlwI GGATC 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 325, 480
ApoI RAATTY 1 cut(s) 61
AspLEI GCGC 1 cut(s) 108
AspS9I GGNCC 2 cut(s) 168, 189
AvaII GGWCC 2 cut(s) 168, 189
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 312, 467
BccI CCATC 2 cut(s) 175, 179
BciT130I CCWGG 1 cut(s) 261
BciVI GTATCC 1 cut(s) 500
BfaI CTAG 2 cut(s) 101, 486
BfuI GTATCC 1 cut(s) 500
BglII AGATCT 1 cut(s) 521
BisI GCNGC 2 cut(s) 326, 481
BlsI GCNGC 2 cut(s) 327, 482
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 2 cut(s) 168, 189
BmgT120I GGNCC 2 cut(s) 168, 189
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 261
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 3 cut(s) 171, 379, 539
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 2 cut(s) 51, 127
BpuEI CTTGAG 3 cut(s) 10, 328, 510
BsaBI GATNNNNATC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse1I ACTGG 4 cut(s) 49, 68, 144, 367
Bse3DI GCAATG 1 cut(s) 221
Bse8I GATNNNNATC 1 cut(s) 506
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 119, 507
BseJI GATNNNNATC 1 cut(s) 506
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMI GCAATG 1 cut(s) 221
BseNI ACTGG 4 cut(s) 49, 68, 144, 367
BseXI GCAGC 2 cut(s) 312, 467
Bsh1236I CGCG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 397
Bsp143I GATC 2 cut(s) 290, 521
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 257
BspPI GGATC 1 cut(s) 298
BspQI GCTCTTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 4 cut(s) 49, 68, 144, 367
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 290, 521
Bst2UI CCWGG 1 cut(s) 261
Bst6I CTCTTC 2 cut(s) 26, 121
BstC8I GCNNGC 1 cut(s) 340
BstF5I GGATG 2 cut(s) 119, 507
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 293, 524
BstMBI GATC 2 cut(s) 290, 521
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 259
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 312, 467
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 290, 521
BstYI RGATCY 2 cut(s) 290, 521
BsuI GTATCC 1 cut(s) 500
BtsCI GGATG 2 cut(s) 119, 507
BtsIMutI CAGTG 2 cut(s) 56, 459
Cac8I GCNNGC 1 cut(s) 340
CfoI GCGC 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 168, 189
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 206
CviAII CATG 5 cut(s) 95, 209, 252, 385, 409
CviJI RGCY 6 cut(s) 178, 325, 342, 381, 407, 480
CviKI_1 RGCY 6 cut(s) 178, 325, 342, 381, 407, 480
CviQI GTAC 1 cut(s) 206
DpnI GATC 2 cut(s) 292, 523
DpnII GATC 2 cut(s) 290, 521
Eam1104I CTCTTC 2 cut(s) 26, 121
EarI CTCTTC 2 cut(s) 26, 121
Eco32I GATATC 1 cut(s) 285
Eco47I GGWCC 2 cut(s) 168, 189
Eco57I CTGAAG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 259
EcoRV GATATC 1 cut(s) 285
EcoT22I ATGCAT 1 cut(s) 164
FaeI CATG 5 cut(s) 98, 212, 255, 388, 412
FatI CATG 5 cut(s) 94, 208, 251, 384, 408
Fnu4HI GCNGC 2 cut(s) 326, 481
FokI GGATG 2 cut(s) 106, 494
Fsp4HI GCNGC 2 cut(s) 326, 481
FspBI CTAG 2 cut(s) 101, 486
GlaI GCGC 1 cut(s) 107
GluI GCNGC 2 cut(s) 326, 481
GsuI CTGGAG 2 cut(s) 51, 127
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 108
Hin1II CATG 5 cut(s) 98, 212, 255, 388, 412
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 3 cut(s) 140, 274, 446
Hpy166II GTNNAC 2 cut(s) 112, 445
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 7 cut(s) 77, 89, 101, 166, 278, 288, 297
Hpy8I GTNNAC 2 cut(s) 112, 445
HpyAV CCTTC 1 cut(s) 391
HpyCH4V TGCA 6 cut(s) 152, 162, 218, 226, 338, 370
Hsp92II CATG 5 cut(s) 98, 212, 255, 388, 412
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 290, 521
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 2 cut(s) 393, 477
Lsp1109I GCAGC 2 cut(s) 312, 467
LweI GCATC 3 cut(s) 171, 379, 539
MaeI CTAG 2 cut(s) 101, 486
MaeIII GTNAC 1 cut(s) 400
MalI GATC 2 cut(s) 292, 523
MboI GATC 2 cut(s) 290, 521
MboII GAAGA 4 cut(s) 13, 108, 149, 285
MfeI CAATTG 1 cut(s) 418
MflI RGATCY 2 cut(s) 290, 521
MluCI AATT 3 cut(s) 10, 61, 418
MlyI GAGTC 2 cut(s) 134, 440
MnlI CCTC 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 164
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 261
MunI CAATTG 1 cut(s) 418
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 108
NdeII GATC 2 cut(s) 290, 521
NlaIII CATG 5 cut(s) 98, 212, 255, 388, 412
NlaIV GGNNCC 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 164
NspI RCATGY 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 274
PkrI GCNGC 2 cut(s) 327, 482
PleI GAGTC 2 cut(s) 134, 440
PpsI GAGTC 2 cut(s) 134, 440
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 168, 189
PsuI RGATCY 2 cut(s) 290, 521
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 2 cut(s) 326, 481
Sau3AI GATC 2 cut(s) 290, 521
Sau96I GGNCC 2 cut(s) 168, 189
SchI GAGTC 2 cut(s) 134, 440
ScrFI CCNGG 1 cut(s) 261
SetI ASST 5 cut(s) 180, 344, 383, 402, 482
SfaNI GCATC 3 cut(s) 171, 379, 539
SinI GGWCC 2 cut(s) 168, 189
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 3 cut(s) 25, 343, 525
SmoI CTYRAG 3 cut(s) 25, 343, 525
Sse9I AATT 3 cut(s) 10, 61, 418
SspI AATATT 2 cut(s) 44, 352
SspMI CTAG 2 cut(s) 101, 486
StyD4I CCNGG 1 cut(s) 259
TaqI TCGA 1 cut(s) 174
TasI AATT 3 cut(s) 10, 61, 418
TatI WGTACW 1 cut(s) 205
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 56, 466
TseI GCWGC 2 cut(s) 325, 480
TspDTI ATGAA 5 cut(s) 45, 108, 150, 373, 425
TspRI CASTG 2 cut(s) 56, 466
VpaK11BI GGWCC 2 cut(s) 168, 189
XapI RAATTY 1 cut(s) 61
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 2 cut(s) 101, 486
Zsp2I ATGCAT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.