FvH4_3g11481

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000110
Physical Location & Seq
Forward (+)
6768407 .. 6770793
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11481.t1

Sequence Viewer

Length: 2292 bp
ATGATTCATGACATTCCAGAGAGGAAAAAAAGGTACGGTGTTGGCCTTACAGGAGGAGCGACTACATTTGAAGATAGTCAGAAACCGGGGCAGAACCAAGCGGAGTATTCGTTCTCCATTATGGAAGAGGAACTGGTTGGGATTGAAGGCAAGAAGCAGATACTAATGGGATGGCTGATCGATGAAGAGCAACACCAAACTGTAATATCTGTGGTTGGCATGGGAGGTTCTGGGAAGACAACTCTAGCTGCCAAGACCTTCAACAATGAAGGGGTACAGAGACATTTCAATTGTTATGCGTGGATTACCGTTTCTGAAACTTATGTTACTGAAGACTTGTTTCGAAGTCTAATCAAGGAACTCCACAAATCAACGAAGGAAGATATTCCTCTAGACTTGAATGCCATGAACCGCACAGATTTACGAGATATACTTGTTAACTACTTGGAGTCCAAACGGTACTTGATTGTTCTAGATGATGTGTGGAATATCGAAGTCTGGAAAGAAGTAAGGATAGCACTTCATGATAAAGGACTTGGAAGTCGAATCATACTGACAACCCGAAGAGAAGACATAGCATCTTATTTCGGAGTAAAAGGCCATGTTCACCATATTCAACCCCTGAAAATGTATGAGGCTTGGGAGCTCTTCAGCCAGAAAGCATTCTCATCTAATCATAACAAAGCTTGTCCATCTGAGCTCCAGTCATTAGCTTGGGAACTGGTGGAGAAGTGTGAAGGCCTTCCTCTGGCTATCGTGGCTTTAGGCGGTGTTATGTCTTCAAAGAAGTCACCAGATGAATGGCACAGGTTGAAGCACTGTTTCCTTTATTGTTCCCTCTTACCAGAAGATTATTTGATTCAACGAAAAAGGTTGATTAAGCTGTGGATAGCTGAAGGATTTGTTGAACATGCAAACGGGGTCACGCCAGAAGAGGTTGCAGGTGGCTATCTTCTGGAACTCTGCTTCCGTAGCATGCTACAAGTTGCTATGAGAAATGGAGAAGGAAGGCCGAAAAAAGTTAAGATGCATGATCTTCTACGAGAGCTTGCTCTGTCGATATCCGAAAAAGAAAAATTTGGACTTGTATATGATGGAAGACAAGCAATGGAAGAGATCACAACCCGTCGCTTGTCAATTCACACAACAAGTGACGGAGGAGAAATTAAATCAGGCCCGGGTATGTCAAAAATTCGTTCTCTTCTTGTCTTTGTAACTTACATGTCCTCAAATGAACTGCTTTCTCGATTCAAATTGCTGAGGACTCTAGACTTGGAGGATGTCCAAATTGATAAACTGCCAGATGCAATTGTTTACTTGTTCAACTTGAGATATTTAAACCTGCGGGGCTGCTCTCTAATAAAAGAACTTCCAGAGTCCATAGGGCGTCTCCGCAACCTTCAATTTCTGAACATCATGAATACCAAGATAGAGTCACTCCCACAAGGTATTACAAAGTTGCTCAACCTGCGCCATCTCATTATGTATCGCCAGACCGGAAATTTTCAGGTCTTTGAATACGAGGTTGGGACAAAAGCGCCATCAAATATTTGCCAGTTGCAGAAATTGCAATGTTTAATAACTATTGAATCAGACGGGGACACTATCAGACTAATCGGCAACCTGACTCAACTTACGACCATGGGCATATCAAATTTGAAAGAAACAGATGAGATTGACCTTTGGGTCTCAATTAAGAAGCTGACTCTGCTTCAAGCTCTAGCACTCCAGGCAAGTAATGAAGAGGAAATTCTTCCTGTGAAGGCAGAATGTCTACCTCTTCCGCACCTTCAAAAGCTTTATTTGACAGGCAGACTGCAAAAGGTAGTACCTTGGTTTTCTTCCCTGCATAGCCTCACATTTCTGCAGCTGCATTGGTCTAGACTTGAAGACGATGTACTACCTCACATTGAAGAACTGCCCAATCTGACAAAGCTTTATCTTATAAATGCATATGTTGGGGAAGAGTTGTGTTTCCGCAGAGGTTTTGTAAAGCTGGTGTCATTGCTGTTAAGGAATTTTTGCTCGTTGAAGAAGATAACTATTGAAAAAGGGACCATGCTTAATCTCAGGCACTTATTGGTTGACAGCTGCATGGAATTGAAGGCAGTGCCGCTGGGTCTCGAATACCTTTCAAATCTACAAACTTTGGTCCTGGAAGATGTTCCCATGGAAATTATAAACCCGATTCGGAAAGGAGGTGCAGATCGCAAAAATGTACGACACATCCAAGAGATCAGACATGTTTTCCAACAATCATCCGAGCAGTGGGTCTACGAAAACTTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

764

Amino Acids

87.37

Weight (kDa)

6.76

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 51 - 225 1.2e-46 NB-ARC domain
WHD_DRP PF23559 281 - 351 1.1e-19 Disease resistance protein Winged helix domain
LRR_14 PF23598 397 - 717 5.9e-38 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1946, 2180
AarI CACCTGC 1 cut(s) 932
AasI GACNNNNNNGTC 2 cut(s) 540, 1685
Acc36I ACCTGC 3 cut(s) 932, 1350, 1476
AccI GTMKAC 2 cut(s) 1774, 2274
AciI CCGC 8 cut(s) 101, 412, 768, 1345, 1393, 1784, 1978, 2114
AcsI RAATTY 6 cut(s) 1076, 1191, 1501, 1654, 1749, 2017
AcuI CTGAAG 3 cut(s) 351, 634, 915
AcyI GRCGYC 1 cut(s) 1387
AfaI GTAC 6 cut(s) 35, 276, 461, 1830, 1899, 2220
AfiI CCNNNNNNNGG 2 cut(s) 748, 2268
AflIII ACRYGT 2 cut(s) 1221, 2242
AjnI CCWGG 2 cut(s) 1728, 2154
AjuI GAANNNNNNNTTGG 2 cut(s) 1509, 1541
AloI GAACNNNNNNTCC 4 cut(s) 95, 127, 951, 983
Alw21I GWGCWC 2 cut(s) 648, 702
Alw26I GTCTC 4 cut(s) 274, 1394, 1693, 2126
Ama87I CYCGRG 1 cut(s) 1177
AoxI GGCC 6 cut(s) 43, 598, 739, 1010, 1174, 2286
ApeKI GCWGC 5 cut(s) 248, 1350, 1867, 1870, 2091
ApoI RAATTY 6 cut(s) 1076, 1191, 1501, 1654, 1749, 2017
Asp700I GAANNNNTTC 5 cut(s) 384, 662, 741, 1752, 2163
AspLEI GCGC 2 cut(s) 1473, 1540
AspS9I GGNCC 3 cut(s) 1175, 2055, 2152
AsuC2I CCSGG 3 cut(s) 87, 1178, 1179
AsuHPI GGTGA 2 cut(s) 599, 783
AsuII TTCGAA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 1177
AvaII GGWCC 2 cut(s) 2055, 2152
BanII GRGCYC 2 cut(s) 648, 702
BarI GAAGNNNNNNTAC 2 cut(s) 1881, 1913
BbsI GAAGAC 6 cut(s) 242, 339, 576, 771, 1105, 1896
Bbv12I GWGCWC 2 cut(s) 648, 702
BbvCI CCTCAGC 1 cut(s) 1259
BbvI GCAGC 5 cut(s) 235, 1337, 1857, 1879, 2078
BccI CCATC 5 cut(s) 165, 700, 1088, 1482, 1549
BciT130I CCWGG 2 cut(s) 1730, 2156
BcnI CCSGG 3 cut(s) 87, 1178, 1179
BcoDI GTCTC 4 cut(s) 274, 1394, 1693, 2126
BfaI CTAG 6 cut(s) 245, 392, 473, 1268, 1721, 1881
BfmI CTRYAG 1 cut(s) 1865
BfoI RGCGCY 1 cut(s) 1541
BfuAI ACCTGC 3 cut(s) 932, 1350, 1476
BisI GCNGC 6 cut(s) 249, 1351, 1868, 1871, 2092, 2114
BlsI GCNGC 6 cut(s) 250, 1352, 1869, 1872, 2093, 2115
Bme1390I CCNGG 5 cut(s) 87, 1178, 1179, 1730, 2156
Bme18I GGWCC 2 cut(s) 2055, 2152
BmeT110I CYCGRG 1 cut(s) 1177
BmgT120I GGNCC 3 cut(s) 1175, 2055, 2152
BmiI GGNNCC 1 cut(s) 2056
BmrFI CCNGG 5 cut(s) 87, 1178, 1179, 1730, 2156
BmsI GCATC 3 cut(s) 587, 1017, 1294
BpiI GAAGAC 6 cut(s) 242, 339, 576, 771, 1105, 1896
BpmI CTGGAG 2 cut(s) 686, 1712
Bpu10I CCTNAGC 1 cut(s) 1259
Bpu14I TTCGAA 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 1348
BpuMI CCSGG 3 cut(s) 87, 1178, 1179
Bsa29I ATCGAT 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 1387
BsaI GGTCTC 2 cut(s) 1693, 2126
BsaJI CCNNGG 5 cut(s) 86, 1177, 1641, 1832, 2169
BsaWI WCCGGW 1 cut(s) 1496
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 748, 2268
Bse1I ACTGG 4 cut(s) 138, 703, 726, 1555
Bse3DI GCAATG 3 cut(s) 1113, 1577, 2003
BseBI CCWGG 2 cut(s) 1730, 2156
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 5 cut(s) 86, 1177, 1641, 1832, 2169
BseGI GGATG 4 cut(s) 176, 1285, 2226, 2258
BseLI CCNNNNNNNGG 2 cut(s) 748, 2268
BseMI GCAATG 3 cut(s) 1113, 1577, 2003
BseMII CTCAG 3 cut(s) 687, 1250, 2083
BseNI ACTGG 4 cut(s) 138, 703, 726, 1555
BseRI GAGGAG 2 cut(s) 69, 1173
BseXI GCAGC 5 cut(s) 235, 1337, 1857, 1879, 2078
BseYI CCCAGC 1 cut(s) 2116
BsgI GTGCAG 1 cut(s) 2223
BshFI GGCC 6 cut(s) 45, 600, 741, 1012, 1176, 2288
BshVI ATCGAT 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 648, 702
BsiHKCI CYCGRG 1 cut(s) 1177
BsiSI CCGG 3 cut(s) 86, 1178, 1497
BslFI GGGAC 3 cut(s) 1543, 1613, 2068
BslI CCNNNNNNNGG 2 cut(s) 748, 2268
BsmAI GTCTC 4 cut(s) 274, 1394, 1693, 2126
BsmBI CGTCTC 1 cut(s) 1394
BsmFI GGGAC 3 cut(s) 1543, 1613, 2068
BsmI GAATGC 2 cut(s) 406, 662
BsnI GGCC 6 cut(s) 45, 600, 741, 1012, 1176, 2288
Bso31I GGTCTC 2 cut(s) 1693, 2126
BsoBI CYCGRG 1 cut(s) 1177
Bsp119I TTCGAA 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 648, 702
Bsp143I GATC 5 cut(s) 177, 1033, 1116, 2206, 2235
Bsp19I CCATGG 2 cut(s) 1641, 2169
BspACI CCGC 8 cut(s) 101, 412, 768, 1345, 1393, 1784, 1978, 2114
BspANI GGCC 6 cut(s) 45, 600, 741, 1012, 1176, 2288
BspCNI CTCAG 3 cut(s) 688, 1251, 2082
BspDI ATCGAT 1 cut(s) 180
BspHI TCATGA 3 cut(s) 7, 523, 1416
BspLI GGNNCC 1 cut(s) 2056
BspMAI CTGCAG 1 cut(s) 1869
BspMI ACCTGC 3 cut(s) 932, 1350, 1476
BspQI GCTCTTC 2 cut(s) 180, 653
BspT104I TTCGAA 1 cut(s) 343
BspTNI GGTCTC 2 cut(s) 1693, 2126
BsrDI GCAATG 3 cut(s) 1113, 1577, 2003
BsrI ACTGG 4 cut(s) 138, 703, 726, 1555
BssECI CCNNGG 5 cut(s) 86, 1177, 1641, 1832, 2169
BssMI GATC 5 cut(s) 177, 1033, 1116, 2206, 2235
BssNI GRCGYC 1 cut(s) 1387
BssT1I CCWWGG 3 cut(s) 1641, 1832, 2169
Bst2UI CCWGG 2 cut(s) 1730, 2156
Bst4CI ACNGT 5 cut(s) 38, 202, 310, 459, 821
BstACI GRCGYC 1 cut(s) 1387
BstAPI GCANNNNNTGC 1 cut(s) 1567
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 977, 1050
BstDEI CTNAG 3 cut(s) 696, 1259, 2069
BstDSI CCRYGG 2 cut(s) 1641, 2169
BstF5I GGATG 4 cut(s) 176, 1285, 2226, 2258
BstH2I RGCGCY 1 cut(s) 1541
BstHHI GCGC 2 cut(s) 1473, 1540
BstKTI GATC 5 cut(s) 180, 1036, 1119, 2209, 2238
BstMAI GTCTC 4 cut(s) 274, 1394, 1693, 2126
BstMBI GATC 5 cut(s) 177, 1033, 1116, 2206, 2235
BstMWI GCNNNNNNNGC 6 cut(s) 758, 972, 1468, 1567, 1708, 1730
BstNI CCWGG 2 cut(s) 1730, 2156
BstNSI RCATGY 4 cut(s) 914, 979, 1225, 2246
BstSCI CCNGG 5 cut(s) 85, 1176, 1177, 1728, 2154
BstSFI CTRYAG 1 cut(s) 1865
BstV1I GCAGC 5 cut(s) 235, 1337, 1857, 1879, 2078
BstV2I GAAGAC 6 cut(s) 242, 339, 576, 771, 1105, 1896
BstXI CCANNNNNNTGG 1 cut(s) 801
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 6 cut(s) 45, 600, 741, 1012, 1176, 2288
BsuTUI ATCGAT 1 cut(s) 180
BtgI CCRYGG 2 cut(s) 1641, 2169
BtsCI GGATG 4 cut(s) 176, 1285, 2226, 2258
BtsI GCAGTG 2 cut(s) 2115, 2273
BtsIMutI CAGTG 3 cut(s) 817, 2115, 2273
BveI ACCTGC 3 cut(s) 932, 1350, 1476
Cac8I GCNNGC 2 cut(s) 977, 1050
CciI TCATGA 3 cut(s) 7, 523, 1416
CfoI GCGC 2 cut(s) 1473, 1540
Cfr13I GGNCC 3 cut(s) 1175, 2055, 2152
Cfr9I CCCGGG 1 cut(s) 1177
ClaI ATCGAT 1 cut(s) 180
CseI GACGC 1 cut(s) 1376
Csp6I GTAC 6 cut(s) 34, 275, 460, 1829, 1898, 2219
CviQI GTAC 6 cut(s) 34, 275, 460, 1829, 1898, 2219
DdeI CTNAG 3 cut(s) 696, 1259, 2069
DpnI GATC 5 cut(s) 179, 1035, 1118, 2208, 2237
DpnII GATC 5 cut(s) 177, 1033, 1116, 2206, 2235
DraI TTTAAA 1 cut(s) 1338
DrdI GACNNNNNNGTC 2 cut(s) 540, 1685
DseDI GACNNNNNNGTC 2 cut(s) 540, 1685
Ecl136II GAGCTC 2 cut(s) 646, 700
Eco130I CCWWGG 3 cut(s) 1641, 1832, 2169
Eco147I AGGCCT 1 cut(s) 741
Eco24I GRGCYC 2 cut(s) 648, 702
Eco31I GGTCTC 2 cut(s) 1693, 2126
Eco32I GATATC 1 cut(s) 1062
Eco47I GGWCC 2 cut(s) 2055, 2152
Eco53kI GAGCTC 2 cut(s) 646, 700
Eco57I CTGAAG 3 cut(s) 351, 634, 915
Eco88I CYCGRG 1 cut(s) 1177
EcoICRI GAGCTC 2 cut(s) 646, 700
EcoRII CCWGG 2 cut(s) 1728, 2154
EcoRV GATATC 1 cut(s) 1062
EcoT14I CCWWGG 3 cut(s) 1641, 1832, 2169
EcoT22I ATGCAT 2 cut(s) 1032, 1954
EcoT38I GRGCYC 2 cut(s) 648, 702
ErhI CCWWGG 3 cut(s) 1641, 1832, 2169
Esp3I CGTCTC 1 cut(s) 1394
FaqI GGGAC 3 cut(s) 1543, 1613, 2068
FauI CCCGC 1 cut(s) 1338
FauNDI CATATG 1 cut(s) 1954
FblI GTMKAC 2 cut(s) 1774, 2274
Fnu4HI GCNGC 6 cut(s) 249, 1351, 1868, 1871, 2092, 2114
FokI GGATG 4 cut(s) 183, 1292, 2213, 2245
FriOI GRGCYC 2 cut(s) 648, 702
Fsp4HI GCNGC 6 cut(s) 249, 1351, 1868, 1871, 2092, 2114
FspBI CTAG 6 cut(s) 245, 392, 473, 1268, 1721, 1881
GlaI GCGC 2 cut(s) 1472, 1539
GluI GCNGC 6 cut(s) 249, 1351, 1868, 1871, 2092, 2114
GsaI CCCAGC 1 cut(s) 2120
GsuI CTGGAG 2 cut(s) 686, 1712
HaeII RGCGCY 1 cut(s) 1541
HaeIII GGCC 6 cut(s) 45, 600, 741, 1012, 1176, 2288
HapII CCGG 3 cut(s) 86, 1178, 1497
HgaI GACGC 1 cut(s) 1376
HhaI GCGC 2 cut(s) 1473, 1540
Hin1I GRCGYC 1 cut(s) 1387
Hin6I GCGC 2 cut(s) 1471, 1538
HinP1I GCGC 2 cut(s) 1471, 1538
HincII GTYRAC 2 cut(s) 439, 2086
HindII GTYRAC 2 cut(s) 439, 2086
HindIII AAGCTT 3 cut(s) 684, 1796, 1934
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 3 cut(s) 86, 1178, 1497
HphI GGTGA 2 cut(s) 599, 783
Hpy166II GTNNAC 6 cut(s) 439, 607, 1315, 1775, 2086, 2275
Hpy8I GTNNAC 6 cut(s) 439, 607, 1315, 1775, 2086, 2275
Hpy99I CGWCG 1 cut(s) 1131
HpyCH4III ACNGT 5 cut(s) 38, 202, 310, 459, 821
HpyF10VI GCNNNNNNNGC 6 cut(s) 758, 972, 1468, 1567, 1708, 1730
HpyF3I CTNAG 3 cut(s) 696, 1259, 2069
Hsp92I GRCGYC 1 cut(s) 1387
HspAI GCGC 2 cut(s) 1471, 1538
KspAI GTTAAC 1 cut(s) 439
Kzo9I GATC 5 cut(s) 177, 1033, 1116, 2206, 2235
LguI GCTCTTC 2 cut(s) 180, 653
LmnI GCTCC 3 cut(s) 56, 643, 705
Lsp1109I GCAGC 5 cut(s) 235, 1337, 1857, 1879, 2078
LweI GCATC 3 cut(s) 587, 1017, 1294
MaeI CTAG 6 cut(s) 245, 392, 473, 1268, 1721, 1881
MaeIII GTNAC 6 cut(s) 325, 789, 922, 1151, 1213, 1434
MalI GATC 5 cut(s) 179, 1035, 1118, 2208, 2237
MboI GATC 5 cut(s) 177, 1033, 1116, 2206, 2235
MfeI CAATTG 2 cut(s) 289, 1308
MhlI GDGCHC 2 cut(s) 648, 702
MlyI GAGTC 6 cut(s) 458, 1258, 1385, 1442, 1621, 1699
MmeI TCCRAC 1 cut(s) 2275
Mph1103I ATGCAT 2 cut(s) 1032, 1954
MroXI GAANNNNTTC 5 cut(s) 384, 662, 741, 1752, 2163
MseI TTAA 9 cut(s) 438, 879, 1023, 1167, 1337, 1577, 1695, 2012, 2064
MspA1I CMGCKG 3 cut(s) 1870, 2091, 2116
MspI CCGG 3 cut(s) 86, 1178, 1497
MspR9I CCNGG 5 cut(s) 87, 1178, 1179, 1730, 2156
MunI CAATTG 2 cut(s) 289, 1308
Mva1269I GAATGC 2 cut(s) 406, 662
MvaI CCWGG 2 cut(s) 1730, 2156
MwoI GCNNNNNNNGC 6 cut(s) 758, 972, 1468, 1567, 1708, 1730
NciI CCSGG 3 cut(s) 87, 1178, 1179
NcoI CCATGG 2 cut(s) 1641, 2169
NdeI CATATG 1 cut(s) 1954
NdeII GATC 5 cut(s) 177, 1033, 1116, 2206, 2235
NlaIV GGNNCC 1 cut(s) 2056
NmuCI GTSAC 4 cut(s) 789, 922, 1151, 1434
NsiI ATGCAT 2 cut(s) 1032, 1954
NspI RCATGY 4 cut(s) 914, 979, 1225, 2246
NspV TTCGAA 1 cut(s) 343
PaeI GCATGC 1 cut(s) 979
PagI TCATGA 3 cut(s) 7, 523, 1416
PaqCI CACCTGC 1 cut(s) 932
PceI AGGCCT 1 cut(s) 741
PciI ACATGT 2 cut(s) 1221, 2242
PciSI GCTCTTC 2 cut(s) 180, 653
PctI GAATGC 2 cut(s) 406, 662
PdmI GAANNNNTTC 5 cut(s) 384, 662, 741, 1752, 2163
PfeI GAWTC 6 cut(s) 4, 546, 859, 1248, 1589, 2188
PfoI TCCNGGA 1 cut(s) 2154
PkrI GCNGC 6 cut(s) 250, 1352, 1869, 1872, 2093, 2115
PleI GAGTC 6 cut(s) 457, 1258, 1384, 1441, 1621, 1699
PpsI GAGTC 6 cut(s) 457, 1258, 1384, 1441, 1621, 1699
PscI ACATGT 2 cut(s) 1221, 2242
PsiI TTATAA 2 cut(s) 1946, 2180
Psp124BI GAGCTC 2 cut(s) 648, 702
Psp6I CCWGG 2 cut(s) 1728, 2154
PspFI CCCAGC 1 cut(s) 2116
PspGI CCWGG 2 cut(s) 1728, 2154
PspN4I GGNNCC 1 cut(s) 2056
PspPI GGNCC 3 cut(s) 1175, 2055, 2152
PstI CTGCAG 1 cut(s) 1869
PvuII CAGCTG 2 cut(s) 1870, 2091
RsaI GTAC 6 cut(s) 35, 276, 461, 1830, 1899, 2220
RsaNI GTAC 6 cut(s) 34, 275, 460, 1829, 1898, 2219
SacI GAGCTC 2 cut(s) 648, 702
SapI GCTCTTC 2 cut(s) 180, 653
SaqAI TTAA 9 cut(s) 438, 879, 1023, 1167, 1337, 1577, 1695, 2012, 2064
SatI GCNGC 6 cut(s) 249, 1351, 1868, 1871, 2092, 2114
Sau3AI GATC 5 cut(s) 177, 1033, 1116, 2206, 2235
Sau96I GGNCC 3 cut(s) 1175, 2055, 2152
SchI GAGTC 6 cut(s) 458, 1258, 1385, 1442, 1621, 1699
ScrFI CCNGG 5 cut(s) 87, 1178, 1179, 1730, 2156
SduI GDGCHC 2 cut(s) 648, 702
SfaNI GCATC 3 cut(s) 587, 1017, 1294
SfcI CTRYAG 1 cut(s) 1865
SfuI TTCGAA 1 cut(s) 343
SinI GGWCC 2 cut(s) 2055, 2152
SmaI CCCGGG 1 cut(s) 1179
SmlI CTYRAG 1 cut(s) 1327
SmoI CTYRAG 1 cut(s) 1327
SphI GCATGC 1 cut(s) 979
SseBI AGGCCT 1 cut(s) 741
SsiI CCGC 8 cut(s) 101, 412, 768, 1345, 1393, 1784, 1978, 2114
SspI AATATT 1 cut(s) 1549
SspMI CTAG 6 cut(s) 245, 392, 473, 1268, 1721, 1881
SstI GAGCTC 2 cut(s) 648, 702
StuI AGGCCT 1 cut(s) 741
StyD4I CCNGG 5 cut(s) 85, 1176, 1177, 1728, 2154
StyI CCWWGG 3 cut(s) 1641, 1832, 2169
TaaI ACNGT 5 cut(s) 38, 202, 310, 459, 821
TaqI TCGA 7 cut(s) 180, 343, 492, 544, 1058, 1246, 2124
TatI WGTACW 1 cut(s) 1897
TauI GCSGC 1 cut(s) 2116
TfiI GAWTC 6 cut(s) 4, 546, 859, 1248, 1589, 2188
Tru1I TTAA 9 cut(s) 438, 879, 1023, 1167, 1337, 1577, 1695, 2012, 2064
Tru9I TTAA 9 cut(s) 438, 879, 1023, 1167, 1337, 1577, 1695, 2012, 2064
TscAI CASTG 3 cut(s) 824, 2115, 2273
TseFI GTSAC 4 cut(s) 789, 922, 1151, 1434
TseI GCWGC 5 cut(s) 248, 1350, 1867, 1870, 2091
Tsp45I GTSAC 4 cut(s) 789, 922, 1151, 1434
TspDTI ATGAA 8 cut(s) 198, 282, 422, 512, 813, 1248, 1433, 1755
TspGWI ACGGA 2 cut(s) 959, 1170
TspMI CCCGGG 1 cut(s) 1177
TspRI CASTG 3 cut(s) 824, 2115, 2273
VpaK11BI GGWCC 2 cut(s) 2055, 2152
XapI RAATTY 6 cut(s) 1076, 1191, 1501, 1654, 1749, 2017
XbaI TCTAGA 4 cut(s) 391, 472, 1267, 1880
XceI RCATGY 4 cut(s) 914, 979, 1225, 2246
XmaI CCCGGG 1 cut(s) 1177
XmiI GTMKAC 2 cut(s) 1774, 2274
XmnI GAANNNNTTC 5 cut(s) 384, 662, 741, 1752, 2163
XspI CTAG 6 cut(s) 245, 392, 473, 1268, 1721, 1881
Zsp2I ATGCAT 2 cut(s) 1032, 1954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.