FvH4_3g11502

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000110
Physical Location & Seq
Forward (+)
6780072 .. 6784179
4108 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11502.t1

Sequence Viewer

Length: 2043 bp
ATGGCCTTATCTGCAACAAACCTCTTGATTGGAAAACTAGTGACAATTATTCAAAACGAAGGAACCACCATAGCCAGTGTTCGTGATGAAGTTGATAACATTAAGCTGGAGCTTCTAAGCATGAAAGCTTTCCTTGAGGACGCGGAGGCCGAAAAAGCACAAACAGAAGGACAGAAAGTGTGGGTTGCAAGCATCAGAGACTTGGCCTATGACGTTGAAGATATCATTGATGAGTTCATGTATCACATGTATGAGAAGCAAAGTGGGGGTCGGATTTCCAGGGGTCTATACAAAACCATTTATGCTCCAAATAGCCTCTGGTTTAGGCGCAAAATTGCAAAGAAGTTGCAGAAAATCACTGAGACAATCAAAGCCATTCCTGAGAGGAATCAAAGATATGGTTTTGGAATTGCCAGAGGAACAAGTACTACTGAAGATACTTACAAATGGGTGCAGAACCAAGTGGAGTCTTCCTTTCTCATTACAGAAGACGAACTTGTGGGGATTGAAGACAAGAAGCAGATTCTAATGGGATGGCTAATGGATGAAGAGCAACACCAGACCGTGATATCCGTGGTTGGGATGGGAGGATCTGGAAAGACAACTCTGGTTGCCAAGACCTACACCAACGAAAGGGTAAAGAGACATTTCAACTGTTATGCGTGGATTACAGTTTCTCAAATTTATGTTGTTGCAGACTTGTTACGAAGTTTATTCAAGGGACTCCACAAATCAAGGAAGGAAGATATTCCTGCAAACTTGAATGCCATGAGCCGCACAGAATTACAAGATACTCTGGTTAACTATTTAGAGTCCAAACGGTACTTGGTTGTTCTAGATGATATGTGGGATGTCAAAGTCTGGAAAGAAGTAAGGGCATCACTTCTTGATAAAGGACTTGGAAGTCGAATCATAATTACAACCCGAAAAGAAGACATAGCATCTAGTTCTTTTGGAGTTGAAAGCCATGTTCACCATATTCAACCCCTCCAAAAGATTGATGCATGGGAACTCTTCAGAAGGAAAGCATTCTCAACTAATCATGACAAAGCTTGTCCACCCGAGCTTGGCCTATTGGCTCGAGAACTTGTGGGAAACAACATGTCCTCATTGTGTTTCTCAAATGCACTGCTTTCTAGATTCAAATTGTTGAGGAGTCTAGACTTGGAGGGTGTCCAGATTGATAAGCTGCCGGATGCAAATCGATCAAGACAAGTATATATTGGAGATTTAACCCAATTTGATGAGGAATCCCTTATGTACGTGTGGAAAGATGCAAGGATGGATCTCGGCTATGGTTGCATTGCATGGAAATGGCACCCAAAGCCGGCAGCTCCCCGAGGCATGAAGCTGTGGGATGTCCCTCAAGGCGGTCTTTGCACCAAAACTGGTCTTAGAGACGGTGCAGGGGAAGTGCTTGATGAAATGTCTGACAGGAACCTTGCAACTTGGAATGCCTACATGTCGAATCTGGTGCTTGATTGGTGGCCGGAGAAGTTTATTCAGCTTGTGAGGCAAGGTTGGGAGCCGATTCGATTACTCATTTCTCAATGCCTGTTCCGATACGTTGGCTTTTGGGACTTGGGGGACAGTTACGTGGTTTGTACTGAAGGGTCTTCCAGTGCGGCACTCATCGCCTATGCCAAGCCGAGATCTCTCGGCCTTTTCTTAATGTTCTGCAAGCGAGTATTCTGGAGCACCCAGAATCGAAACAATGGTTCCGTACCAACGGCGGTGGGCTTCAAGCTCATCAGATCAAGAATTGGAGGATTCACCGTGGCTAGGACTCAGAGAAGCAATGGTTTCTCAAGCCTTGGTGCCAAGACCCCGATTAAGATGACTCAATGGCGTCGATTGCAGTGGAGGTTGGTTGCGGTGGTTGAGAACGTGAAAACTTGGTATGGATCAGGTTTGGCAAAAGGCTGGTTCATGCCGGTGTCTGGCCATCGTCTTTCCTTGAAGGTGGCGACCAAAGATCCTGTTTCAACTGGAAAAGAGGAACGTATTGATGATGACGGCGGCGTGGTCAAGGGTGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

681

Amino Acids

77.27

Weight (kDa)

9.04

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 7 - 88 2.4e-23 Rx N-terminal domain
NB-ARC PF00931 170 - 347 7.7e-43 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 903
AccB1I GGYRCC 2 cut(s) 1317, 1817
AccII CGCG 1 cut(s) 143
AciI CCGC 7 cut(s) 143, 775, 1371, 1625, 1733, 1874, 2019
AclWI GGATC 4 cut(s) 598, 1293, 1912, 1970
AcoI YGGCCR 2 cut(s) 1487, 1942
AcsI RAATTY 1 cut(s) 681
AcuI CTGAAG 3 cut(s) 453, 1000, 1629
AcyI GRCGYC 1 cut(s) 1849
AfaI GTAC 5 cut(s) 427, 824, 1262, 1606, 1725
AfiI CCNNNNNNNGG 7 cut(s) 579, 633, 1067, 1327, 1370, 1782, 1940
AflIII ACRYGT 4 cut(s) 246, 1101, 1263, 1461
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 1 cut(s) 278
Alw21I GWGCWC 1 cut(s) 1700
Alw26I GTCTC 4 cut(s) 192, 356, 637, 1392
AlwI GGATC 4 cut(s) 598, 1293, 1912, 1970
Ama87I CYCGRG 3 cut(s) 1061, 1080, 1338
AoxI GGCC 7 cut(s) 3, 147, 204, 1069, 1487, 1660, 1942
ApeKI GCWGC 2 cut(s) 1189, 1331
ApoI RAATTY 1 cut(s) 681
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 3 cut(s) 128, 747, 1028
AspLEI GCGC 1 cut(s) 330
AsuHPI GGTGA 2 cut(s) 965, 1765
AvaI CYCGRG 3 cut(s) 1061, 1080, 1338
BaeI ACNNNNGTAYC 2 cut(s) 783, 816
BalI TGGCCA 1 cut(s) 1944
BanI GGYRCC 2 cut(s) 1317, 1817
BbsI GAAGAC 5 cut(s) 462, 495, 516, 939, 1608
Bbv12I GWGCWC 1 cut(s) 1700
BbvI GCAGC 2 cut(s) 1176, 1343
BccI CCATC 4 cut(s) 528, 577, 1276, 1953
BceAI ACGGC 2 cut(s) 1746, 2032
BcgI CGANNNNNNTGC 2 cut(s) 1456, 1490
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 4 cut(s) 192, 356, 637, 1392
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 6 cut(s) 38, 836, 945, 1137, 1160, 1782
BglII AGATCT 1 cut(s) 1652
BisI GCNGC 5 cut(s) 775, 1190, 1332, 1626, 2020
BlsI GCNGC 5 cut(s) 776, 1191, 1333, 1627, 2021
BmcAI AGTACT 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 280
BmeT110I CYCGRG 3 cut(s) 1061, 1080, 1338
BmiI GGNNCC 6 cut(s) 64, 1319, 1439, 1527, 1720, 1819
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 6 cut(s) 201, 887, 950, 991, 1186, 1264
BpiI GAAGAC 5 cut(s) 462, 495, 516, 939, 1608
BpmI CTGGAG 2 cut(s) 128, 1714
BpuEI CTTGAG 3 cut(s) 155, 1350, 1792
Bsa29I ATCGAT 1 cut(s) 1204
BsaAI YACGTR 2 cut(s) 1264, 1597
BsaBI GATNNNNATC 1 cut(s) 1200
BsaHI GRCGYC 1 cut(s) 1849
BsaJI CCNNGG 5 cut(s) 279, 573, 1339, 1776, 1813
Bsc4I CCNNNNNNNGG 7 cut(s) 579, 633, 1067, 1327, 1370, 1782, 1940
Bse118I RCCGGY 2 cut(s) 1327, 1933
Bse1I ACTGG 4 cut(s) 75, 1393, 1620, 1993
Bse3DI GCAATG 2 cut(s) 1302, 1804
Bse8I GATNNNNATC 1 cut(s) 1200
BseBI CCWGG 1 cut(s) 280
BseCI ATCGAT 1 cut(s) 1204
BseDI CCNNGG 5 cut(s) 279, 573, 1339, 1776, 1813
BseGI GGATG 7 cut(s) 539, 550, 588, 856, 1201, 1287, 1363
BseJI GATNNNNATC 1 cut(s) 1200
BseLI CCNNNNNNNGG 7 cut(s) 579, 633, 1067, 1327, 1370, 1782, 1940
BseMI GCAATG 2 cut(s) 1302, 1804
BseMII CTCAG 3 cut(s) 351, 372, 1802
BseNI ACTGG 4 cut(s) 75, 1393, 1620, 1993
BseRI GAGGAG 1 cut(s) 1168
BseXI GCAGC 2 cut(s) 1176, 1343
BsgI GTGCAG 2 cut(s) 473, 1425
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 7 cut(s) 5, 149, 206, 1071, 1489, 1662, 1944
BshNI GGYRCC 2 cut(s) 1317, 1817
BshVI ATCGAT 1 cut(s) 1204
BsiHKAI GWGCWC 1 cut(s) 1700
BsiHKCI CYCGRG 3 cut(s) 1061, 1080, 1338
BsiSI CCGG 4 cut(s) 1193, 1328, 1490, 1934
BslFI GGGAC 4 cut(s) 735, 1346, 1592, 1601
BslI CCNNNNNNNGG 7 cut(s) 579, 633, 1067, 1327, 1370, 1782, 1940
BsmAI GTCTC 4 cut(s) 192, 356, 637, 1392
BsmBI CGTCTC 1 cut(s) 1392
BsmFI GGGAC 4 cut(s) 735, 1346, 1592, 1601
BsmI GAATGC 3 cut(s) 769, 1028, 1459
BsnI GGCC 7 cut(s) 5, 149, 206, 1071, 1489, 1662, 1944
BsoBI CYCGRG 3 cut(s) 1061, 1080, 1338
Bsp1286I GDGCHC 1 cut(s) 1700
Bsp143I GATC 7 cut(s) 590, 1205, 1285, 1652, 1754, 1904, 1975
BspACI CCGC 7 cut(s) 143, 775, 1371, 1625, 1733, 1874, 2019
BspANI GGCC 7 cut(s) 5, 149, 206, 1071, 1489, 1662, 1944
BspCNI CTCAG 3 cut(s) 352, 373, 1801
BspDI ATCGAT 1 cut(s) 1204
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 1042
BspLI GGNNCC 6 cut(s) 64, 1319, 1439, 1527, 1720, 1819
BspPI GGATC 4 cut(s) 598, 1293, 1912, 1970
BspQI GCTCTTC 1 cut(s) 543
BspT107I GGYRCC 2 cut(s) 1317, 1817
BsrDI GCAATG 2 cut(s) 1302, 1804
BsrFI RCCGGY 2 cut(s) 1327, 1933
BsrI ACTGG 4 cut(s) 75, 1393, 1620, 1993
BssAI RCCGGY 2 cut(s) 1327, 1933
BssECI CCNNGG 5 cut(s) 279, 573, 1339, 1776, 1813
BssMI GATC 7 cut(s) 590, 1205, 1285, 1652, 1754, 1904, 1975
BssNI GRCGYC 1 cut(s) 1849
BssT1I CCWWGG 1 cut(s) 1813
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 7 cut(s) 565, 656, 673, 822, 1403, 1592, 1777
Bst6I CTCTTC 2 cut(s) 543, 1019
BstACI GRCGYC 1 cut(s) 1849
BstBAI YACGTR 2 cut(s) 1264, 1597
BstC8I GCNNGC 3 cut(s) 190, 1329, 1682
BstDEI CTNAG 5 cut(s) 116, 360, 381, 1394, 1788
BstDSI CCRYGG 2 cut(s) 573, 1776
BstF5I GGATG 7 cut(s) 539, 550, 588, 856, 1201, 1287, 1363
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 7 cut(s) 593, 1208, 1288, 1655, 1757, 1907, 1978
BstMAI GTCTC 4 cut(s) 192, 356, 637, 1392
BstMBI GATC 7 cut(s) 590, 1205, 1285, 1652, 1754, 1904, 1975
BstMWI GCNNNNNNNGC 8 cut(s) 11, 155, 1299, 1324, 1377, 1513, 1634, 1855
BstNI CCWGG 1 cut(s) 280
BstNSI RCATGY 3 cut(s) 250, 1105, 1465
BstSCI CCNGG 1 cut(s) 278
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 1176, 1343
BstV2I GAAGAC 5 cut(s) 462, 495, 516, 939, 1608
BstX2I RGATCY 4 cut(s) 590, 1285, 1652, 1975
BstYI RGATCY 4 cut(s) 590, 1285, 1652, 1975
Bsu15I ATCGAT 1 cut(s) 1204
BsuRI GGCC 7 cut(s) 5, 149, 206, 1071, 1489, 1662, 1944
BsuTUI ATCGAT 1 cut(s) 1204
BtgI CCRYGG 2 cut(s) 573, 1776
BtgZI GCGATG 1 cut(s) 1618
BtsCI GGATG 7 cut(s) 539, 550, 588, 856, 1201, 1287, 1363
BtsI GCAGTG 2 cut(s) 1127, 1865
BtsIMutI CAGTG 5 cut(s) 82, 357, 1127, 1627, 1865
Cac8I GCNNGC 3 cut(s) 190, 1329, 1682
CciI TCATGA 1 cut(s) 1042
CfoI GCGC 1 cut(s) 330
Cfr10I RCCGGY 2 cut(s) 1327, 1933
ClaI ATCGAT 1 cut(s) 1204
CseI GACGC 2 cut(s) 149, 1838
Csp6I GTAC 5 cut(s) 426, 823, 1261, 1605, 1724
CspCI CAANNNNNGTGG 2 cut(s) 1716, 1751
CviQI GTAC 5 cut(s) 426, 823, 1261, 1605, 1724
DdeI CTNAG 5 cut(s) 116, 360, 381, 1394, 1788
DpnI GATC 7 cut(s) 592, 1207, 1287, 1654, 1756, 1906, 1977
DpnII GATC 7 cut(s) 590, 1205, 1285, 1652, 1754, 1904, 1975
DrdI GACNNNNNNGTC 1 cut(s) 903
DseDI GACNNNNNNGTC 1 cut(s) 903
EaeI YGGCCR 2 cut(s) 1487, 1942
Eam1104I CTCTTC 2 cut(s) 543, 1019
EarI CTCTTC 2 cut(s) 543, 1019
Eco130I CCWWGG 1 cut(s) 1813
Eco32I GATATC 2 cut(s) 223, 570
Eco57I CTGAAG 3 cut(s) 453, 1000, 1629
Eco88I CYCGRG 3 cut(s) 1061, 1080, 1338
EcoRII CCWGG 1 cut(s) 278
EcoRV GATATC 2 cut(s) 223, 570
EcoT14I CCWWGG 1 cut(s) 1813
EcoT22I ATGCAT 1 cut(s) 1006
ErhI CCWWGG 1 cut(s) 1813
Esp3I CGTCTC 1 cut(s) 1392
FalI AAGNNNNNCTT 6 cut(s) 117, 149, 480, 512, 1359, 1391
FaqI GGGAC 4 cut(s) 735, 1346, 1592, 1601
Fnu4HI GCNGC 5 cut(s) 775, 1190, 1332, 1626, 2020
FokI GGATG 7 cut(s) 546, 557, 595, 863, 1208, 1294, 1370
Fsp4HI GCNGC 5 cut(s) 775, 1190, 1332, 1626, 2020
FspBI CTAG 6 cut(s) 38, 836, 945, 1137, 1160, 1782
GlaI GCGC 1 cut(s) 329
GluI GCNGC 5 cut(s) 775, 1190, 1332, 1626, 2020
GsuI CTGGAG 2 cut(s) 128, 1714
HaeIII GGCC 7 cut(s) 5, 149, 206, 1071, 1489, 1662, 1944
HapII CCGG 4 cut(s) 1193, 1328, 1490, 1934
HgaI GACGC 2 cut(s) 149, 1838
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 1 cut(s) 1849
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HindIII AAGCTT 2 cut(s) 126, 1050
HpaI GTTAAC 1 cut(s) 802
HpaII CCGG 4 cut(s) 1193, 1328, 1490, 1934
HphI GGTGA 2 cut(s) 965, 1765
Hpy166II GTNNAC 3 cut(s) 802, 973, 1058
Hpy188I TCNGA 7 cut(s) 197, 273, 1019, 1432, 1562, 1754, 1791
Hpy8I GTNNAC 3 cut(s) 802, 973, 1058
Hpy99I CGWCG 1 cut(s) 1854
HpyAV CCTTC 6 cut(s) 53, 161, 733, 1014, 1604, 1954
HpyCH4III ACNGT 7 cut(s) 565, 656, 673, 822, 1403, 1592, 1777
HpyCH4IV ACGT 6 cut(s) 213, 1263, 1566, 1596, 1887, 2002
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 155, 1299, 1324, 1377, 1513, 1634, 1855
HpyF3I CTNAG 5 cut(s) 116, 360, 381, 1394, 1788
HpySE526I ACGT 6 cut(s) 213, 1263, 1566, 1596, 1887, 2002
Hsp92I GRCGYC 1 cut(s) 1849
HspAI GCGC 1 cut(s) 328
KroI GCCGGC 1 cut(s) 1327
KroNI GCCGGC 1 cut(s) 1329
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 7 cut(s) 590, 1205, 1285, 1652, 1754, 1904, 1975
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 5 cut(s) 109, 310, 1339, 1525, 1695
Lsp1109I GCAGC 2 cut(s) 1176, 1343
LweI GCATC 6 cut(s) 201, 887, 950, 991, 1186, 1264
MaeI CTAG 6 cut(s) 38, 836, 945, 1137, 1160, 1782
MaeII ACGT 6 cut(s) 213, 1263, 1566, 1596, 1887, 2002
MaeIII GTNAC 3 cut(s) 40, 702, 1592
MalI GATC 7 cut(s) 592, 1207, 1287, 1654, 1756, 1906, 1977
MboI GATC 7 cut(s) 590, 1205, 1285, 1652, 1754, 1904, 1975
MflI RGATCY 4 cut(s) 590, 1285, 1652, 1975
MhlI GDGCHC 1 cut(s) 1700
MlsI TGGCCA 1 cut(s) 1944
MluCI AATT 9 cut(s) 45, 333, 408, 681, 782, 915, 1145, 1238, 1761
MluNI TGGCCA 1 cut(s) 1944
MlyI GAGTC 6 cut(s) 476, 717, 821, 1165, 1780, 1834
MmeI TCCRAC 1 cut(s) 251
Mox20I TGGCCA 1 cut(s) 1944
Mph1103I ATGCAT 1 cut(s) 1006
MroNI GCCGGC 1 cut(s) 1327
MroXI GAANNNNTTC 3 cut(s) 128, 747, 1028
MscI TGGCCA 1 cut(s) 1944
MseI TTAA 5 cut(s) 102, 801, 1232, 1670, 1833
MslI CAYNNNNRTG 3 cut(s) 249, 1312, 1934
Msp20I TGGCCA 1 cut(s) 1944
MspI CCGG 4 cut(s) 1193, 1328, 1490, 1934
MspR9I CCNGG 1 cut(s) 280
Mva1269I GAATGC 3 cut(s) 769, 1028, 1459
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 8 cut(s) 11, 155, 1299, 1324, 1377, 1513, 1634, 1855
NaeI GCCGGC 1 cut(s) 1329
NdeII GATC 7 cut(s) 590, 1205, 1285, 1652, 1754, 1904, 1975
NgoMIV GCCGGC 1 cut(s) 1327
NlaIV GGNNCC 6 cut(s) 64, 1319, 1439, 1527, 1720, 1819
NmeAIII GCCGAG 3 cut(s) 1269, 1638, 1674
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 1006
NspI RCATGY 3 cut(s) 250, 1105, 1465
PaeR7I CTCGAG 1 cut(s) 1080
PagI TCATGA 1 cut(s) 1042
PciI ACATGT 3 cut(s) 246, 1101, 1461
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PctI GAATGC 3 cut(s) 769, 1028, 1459
PdiI GCCGGC 1 cut(s) 1329
PdmI GAANNNNTTC 3 cut(s) 128, 747, 1028
PfeI GAWTC 9 cut(s) 388, 523, 909, 1140, 1250, 1468, 1531, 1705, 1770
PkrI GCNGC 5 cut(s) 776, 1191, 1333, 1627, 2021
PleI GAGTC 6 cut(s) 475, 717, 820, 1164, 1780, 1834
PpsI GAGTC 6 cut(s) 475, 717, 820, 1164, 1780, 1834
Ppu21I YACGTR 2 cut(s) 1264, 1597
PscI ACATGT 3 cut(s) 246, 1101, 1461
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 6 cut(s) 64, 1319, 1439, 1527, 1720, 1819
PsrI GAACNNNNNNTAC 2 cut(s) 412, 444
PsuI RGATCY 4 cut(s) 590, 1285, 1652, 1975
RsaI GTAC 5 cut(s) 427, 824, 1262, 1606, 1725
RsaNI GTAC 5 cut(s) 426, 823, 1261, 1605, 1724
RseI CAYNNNNRTG 3 cut(s) 249, 1312, 1934
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 5 cut(s) 102, 801, 1232, 1670, 1833
SatI GCNGC 5 cut(s) 775, 1190, 1332, 1626, 2020
Sau3AI GATC 7 cut(s) 590, 1205, 1285, 1652, 1754, 1904, 1975
ScaI AGTACT 1 cut(s) 427
SchI GAGTC 6 cut(s) 476, 717, 821, 1165, 1780, 1834
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 1700
SfaNI GCATC 6 cut(s) 201, 887, 950, 991, 1186, 1264
Sfr274I CTCGAG 1 cut(s) 1080
SlaI CTCGAG 1 cut(s) 1080
SmiMI CAYNNNNRTG 3 cut(s) 249, 1312, 1934
SmlI CTYRAG 4 cut(s) 134, 1080, 1365, 1807
SmoI CTYRAG 4 cut(s) 134, 1080, 1365, 1807
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 9 cut(s) 45, 333, 408, 681, 782, 915, 1145, 1238, 1761
SsiI CCGC 7 cut(s) 143, 775, 1371, 1625, 1733, 1874, 2019
SspMI CTAG 6 cut(s) 38, 836, 945, 1137, 1160, 1782
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 1813
TaaI ACNGT 7 cut(s) 565, 656, 673, 822, 1403, 1592, 1777
TaiI ACGT 6 cut(s) 216, 1266, 1569, 1599, 1890, 2005
TaqI TCGA 7 cut(s) 907, 1081, 1204, 1466, 1534, 1708, 1852
TasI AATT 9 cut(s) 45, 333, 408, 681, 782, 915, 1145, 1238, 1761
TatI WGTACW 2 cut(s) 425, 1604
TauI GCSGC 3 cut(s) 777, 1628, 2022
TfiI GAWTC 9 cut(s) 388, 523, 909, 1140, 1250, 1468, 1531, 1705, 1770
Tru1I TTAA 5 cut(s) 102, 801, 1232, 1670, 1833
Tru9I TTAA 5 cut(s) 102, 801, 1232, 1670, 1833
TscAI CASTG 5 cut(s) 82, 364, 1134, 1627, 1865
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 1189, 1331
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 7 cut(s) 102, 137, 226, 561, 1361, 1437, 1918
TspGWI ACGGA 2 cut(s) 562, 1711
TspRI CASTG 5 cut(s) 82, 364, 1134, 1627, 1865
XapI RAATTY 1 cut(s) 681
XbaI TCTAGA 3 cut(s) 835, 1136, 1159
XceI RCATGY 3 cut(s) 250, 1105, 1465
XcmI CCANNNNNNNNNTGG 2 cut(s) 315, 823
XhoI CTCGAG 1 cut(s) 1080
XmnI GAANNNNTTC 3 cut(s) 128, 747, 1028
XspI CTAG 6 cut(s) 38, 836, 945, 1137, 1160, 1782
ZrmI AGTACT 1 cut(s) 427
Zsp2I ATGCAT 1 cut(s) 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.