Rh5CG146200

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000110
Physical Location & Seq
Forward (+)
13145647 .. 13148899
3253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG146200.1

Sequence Viewer

Length: 909 bp
ATGGCCTCATGTGTAACAGACCTCTTAATTGGAAAAATTGTGGCAATTCTTGAGAACGAAGGAACAACCATATCCAGTATTCGTGATGAAGTTGATAGCATTAAGGAGGAGCTTCGAAGCATGAAAGCTTTCCTAGTGGATGCAGAGGCCGACACCGCAAAAACTGAAGGAGAGAAATTGTGGGTTGAAAGCATCAGAAACTTGGCCTATGATGTTGAAGATATCATTGATGAATTCATGTATCACATGTATGAGAAGCAAAGTGGGAGTCGACTTTCAAGGAGGCTGCACAAAACCATTTGCTTTCCAAAATGTTTTTGGTTTAGACGTAAAACTGCAAAGAGGTTACAGAAGATCACTAAAAAGATCAAAGACATTCCAGAGAGGAATCAAAGGTACGGTGTTGGCCTTGTAGCAGGAGCAACTACATCTGAAGATATTCACAAATTGGTGCAGAACCAAGCTGAGTCTTCGTTTTTCATTATGGAAGACGAACTGGTTGGGATTGAAGGCAAGAAGCAAATACTAATGGGATGGCTCATGGATGAAGAGCAACACCAAACTGTTATATCTGTGGTTGGCATGGGAGGTTCTGGAAAGACAACTCTAGTTGCCAAGACCTTCAACAATGAAAGGGTGAAGAGACATTTCGATTGTTATGCATGGATTATCGTTTCCCAAACGTATGCTGCGGTAGACTTGATTCGAAGCTTGATCATGGAATTCCACAAATCAAGGAAGGAAGATTTCCCTGCAAATTTGAATGCCATGAGCCGCAAAGAATTGCTAGAGTTACTAGTTAACTACTTGGAGTCCAATAAATACCTGGTTGTTCTAGACGACGTGTGGGATATAAAAGTTTGGAGAGAAATAAAGAGGAGAACCACAGAACACACAAAGTGCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

302

Amino Acids

34.94

Weight (kDa)

7.06

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 93 1.6e-22 Rx N-terminal domain
NB-ARC PF00931 172 - 294 2.5e-30 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 271, 696
AciI CCGC 3 cut(s) 156, 692, 775
AcsI RAATTY 3 cut(s) 233, 722, 757
AcuI CTGAAG 2 cut(s) 186, 453
AdeI CACNNNGTG 1 cut(s) 900
AfaI GTAC 1 cut(s) 398
AflIII ACRYGT 2 cut(s) 246, 843
AgsI TTSAA 6 cut(s) 188, 218, 279, 509, 625, 763
AhlI ACTAGT 1 cut(s) 796
AjiI CACGTC 1 cut(s) 844
AjnI CCWGG 1 cut(s) 825
AluBI AGCT 4 cut(s) 112, 128, 464, 711
AluI AGCT 4 cut(s) 112, 128, 464, 711
Alw26I GTCTC 1 cut(s) 637
AoxI GGCC 4 cut(s) 3, 147, 204, 406
ApeKI GCWGC 2 cut(s) 286, 689
ApoI RAATTY 3 cut(s) 233, 722, 757
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 2 cut(s) 128, 438
AspLEI GCGC 1 cut(s) 905
AsuHPI GGTGA 1 cut(s) 649
AsuII TTCGAA 2 cut(s) 115, 706
BbsI GAAGAC 2 cut(s) 462, 495
BbvI GCAGC 2 cut(s) 273, 676
BccI CCATC 1 cut(s) 528
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BciT130I CCWGG 1 cut(s) 827
BclI TGATCA 1 cut(s) 714
BcoDI GTCTC 1 cut(s) 637
BcuI ACTAGT 1 cut(s) 796
BfaI CTAG 6 cut(s) 134, 608, 788, 797, 836, 907
BisI GCNGC 3 cut(s) 287, 690, 775
BlsI GCNGC 3 cut(s) 288, 691, 776
Bme1390I CCNGG 1 cut(s) 827
BmgBI CACGTC 1 cut(s) 844
BmrFI CCNGG 1 cut(s) 827
BmsI GCATC 2 cut(s) 130, 201
BpiI GAAGAC 2 cut(s) 462, 495
Bpu14I TTCGAA 2 cut(s) 115, 706
BpuEI CTTGAG 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 75, 501
BseBI CCWGG 1 cut(s) 827
BseGI GGATG 3 cut(s) 145, 539, 550
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 2 cut(s) 75, 501
BseRI GAGGAG 2 cut(s) 122, 892
BseXI GCAGC 2 cut(s) 273, 676
BsgI GTGCAG 2 cut(s) 272, 473
BshFI GGCC 4 cut(s) 5, 149, 206, 408
BsmAI GTCTC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 4 cut(s) 5, 149, 206, 408
Bsp119I TTCGAA 2 cut(s) 115, 706
Bsp143I GATC 3 cut(s) 354, 366, 714
BspACI CCGC 3 cut(s) 156, 692, 775
BspANI GGCC 4 cut(s) 5, 149, 206, 408
BspCNI CTCAG 1 cut(s) 457
BspQI GCTCTTC 1 cut(s) 543
BspT104I TTCGAA 2 cut(s) 115, 706
BsrI ACTGG 2 cut(s) 75, 501
BssMI GATC 3 cut(s) 354, 366, 714
Bst2UI CCWGG 1 cut(s) 827
Bst4CI ACNGT 2 cut(s) 401, 565
Bst6I CTCTTC 2 cut(s) 543, 635
BstBI TTCGAA 2 cut(s) 115, 706
BstDEI CTNAG 1 cut(s) 465
BstF5I GGATG 3 cut(s) 145, 539, 550
BstHHI GCGC 1 cut(s) 905
BstKTI GATC 3 cut(s) 357, 369, 717
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 3 cut(s) 354, 366, 714
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 827
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 825
BstV1I GCAGC 2 cut(s) 273, 676
BstV2I GAAGAC 2 cut(s) 462, 495
BsuRI GGCC 4 cut(s) 5, 149, 206, 408
BtrI CACGTC 1 cut(s) 844
BtsCI GGATG 3 cut(s) 145, 539, 550
CfoI GCGC 1 cut(s) 905
CsiI ACCWGGT 1 cut(s) 825
Csp6I GTAC 1 cut(s) 397
CviAII CATG 9 cut(s) 9, 121, 238, 247, 541, 583, 663, 718, 769
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 465
DpnI GATC 3 cut(s) 356, 368, 716
DpnII GATC 3 cut(s) 354, 366, 714
DraIII CACNNNGTG 1 cut(s) 900
Eam1104I CTCTTC 2 cut(s) 543, 635
EarI CTCTTC 2 cut(s) 543, 635
Eco32I GATATC 1 cut(s) 223
Eco57I CTGAAG 2 cut(s) 186, 453
EcoRI GAATTC 2 cut(s) 233, 722
EcoRII CCWGG 1 cut(s) 825
EcoRV GATATC 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 664
FaeI CATG 9 cut(s) 12, 124, 241, 250, 544, 586, 666, 721, 772
FatI CATG 9 cut(s) 8, 120, 237, 246, 540, 582, 662, 717, 768
FbaI TGATCA 1 cut(s) 714
FblI GTMKAC 2 cut(s) 271, 696
Fnu4HI GCNGC 3 cut(s) 287, 690, 775
FokI GGATG 3 cut(s) 152, 546, 557
Fsp4HI GCNGC 3 cut(s) 287, 690, 775
FspBI CTAG 6 cut(s) 134, 608, 788, 797, 836, 907
GlaI GCGC 1 cut(s) 904
GluI GCNGC 3 cut(s) 287, 690, 775
HaeIII GGCC 4 cut(s) 5, 149, 206, 408
HhaI GCGC 1 cut(s) 905
Hin1II CATG 9 cut(s) 12, 124, 241, 250, 544, 586, 666, 721, 772
Hin6I GCGC 1 cut(s) 903
HinP1I GCGC 1 cut(s) 903
HincII GTYRAC 2 cut(s) 272, 802
HindII GTYRAC 2 cut(s) 272, 802
HindIII AAGCTT 2 cut(s) 126, 709
HinfI GANTC 5 cut(s) 268, 388, 467, 703, 812
HpaI GTTAAC 1 cut(s) 802
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 3 cut(s) 272, 697, 802
Hpy188I TCNGA 2 cut(s) 197, 433
Hpy188III TCNNGA 5 cut(s) 50, 83, 380, 594, 836
Hpy8I GTNNAC 3 cut(s) 272, 697, 802
Hpy99I CGWCG 1 cut(s) 845
HpyAV CCTTC 5 cut(s) 53, 161, 503, 631, 733
HpyCH4III ACNGT 2 cut(s) 401, 565
HpyCH4IV ACGT 3 cut(s) 328, 683, 843
HpyCH4V TGCA 6 cut(s) 143, 289, 338, 454, 662, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 3 cut(s) 328, 683, 843
Hsp92II CATG 9 cut(s) 12, 124, 241, 250, 544, 586, 666, 721, 772
HspAI GCGC 1 cut(s) 903
Ksp22I TGATCA 1 cut(s) 714
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 3 cut(s) 354, 366, 714
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 2 cut(s) 109, 419
LpnPI CCDG 8 cut(s) 88, 393, 402, 482, 579, 765, 812, 839
Lsp1109I GCAGC 2 cut(s) 273, 676
LweI GCATC 2 cut(s) 130, 201
MabI ACCWGGT 1 cut(s) 825
MaeI CTAG 6 cut(s) 134, 608, 788, 797, 836, 907
MaeII ACGT 3 cut(s) 328, 683, 843
MaeIII GTNAC 3 cut(s) 13, 345, 792
MalI GATC 3 cut(s) 356, 368, 716
MboI GATC 3 cut(s) 354, 366, 714
MboII GAAGA 8 cut(s) 230, 364, 446, 462, 500, 560, 652, 755
MluCI AATT 9 cut(s) 27, 36, 45, 176, 233, 446, 722, 757, 782
MlyI GAGTC 3 cut(s) 277, 476, 821
MnlI CCTC 9 cut(s) 16, 32, 100, 139, 276, 336, 378, 581, 870
Mph1103I ATGCAT 1 cut(s) 664
MroXI GAANNNNTTC 2 cut(s) 128, 438
MseI TTAA 3 cut(s) 26, 102, 801
MslI CAYNNNNRTG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 827
Mva1269I GAATGC 1 cut(s) 769
MvaI CCWGG 1 cut(s) 827
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 3 cut(s) 354, 366, 714
NlaIII CATG 9 cut(s) 12, 124, 241, 250, 544, 586, 666, 721, 772
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 1 cut(s) 250
NspV TTCGAA 2 cut(s) 115, 706
PciI ACATGT 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 543
PctI GAATGC 1 cut(s) 769
PdmI GAANNNNTTC 2 cut(s) 128, 438
PfeI GAWTC 2 cut(s) 388, 703
PkrI GCNGC 3 cut(s) 288, 691, 776
PleI GAGTC 3 cut(s) 276, 475, 820
PpsI GAGTC 3 cut(s) 276, 475, 820
PscI ACATGT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 825
PspGI CCWGG 1 cut(s) 825
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 249
SalI GTCGAC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 3 cut(s) 26, 102, 801
SatI GCNGC 3 cut(s) 287, 690, 775
Sau3AI GATC 3 cut(s) 354, 366, 714
SchI GAGTC 3 cut(s) 277, 476, 821
ScrFI CCNGG 1 cut(s) 827
SexAI ACCWGGT 1 cut(s) 825
SfaNI GCATC 2 cut(s) 130, 201
SfuI TTCGAA 2 cut(s) 115, 706
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 796
Sse9I AATT 9 cut(s) 27, 36, 45, 176, 233, 446, 722, 757, 782
SsiI CCGC 3 cut(s) 156, 692, 775
SspMI CTAG 6 cut(s) 134, 608, 788, 797, 836, 907
StyD4I CCNGG 1 cut(s) 825
TaaI ACNGT 2 cut(s) 401, 565
TaiI ACGT 3 cut(s) 331, 686, 846
TaqI TCGA 4 cut(s) 115, 271, 651, 706
TasI AATT 9 cut(s) 27, 36, 45, 176, 233, 446, 722, 757, 782
TauI GCSGC 1 cut(s) 777
TfiI GAWTC 2 cut(s) 388, 703
Tru1I TTAA 3 cut(s) 26, 102, 801
Tru9I TTAA 3 cut(s) 26, 102, 801
TseI GCWGC 2 cut(s) 286, 689
TspDTI ATGAA 7 cut(s) 102, 137, 226, 246, 469, 561, 645
XapI RAATTY 3 cut(s) 233, 722, 757
XbaI TCTAGA 1 cut(s) 835
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 2 cut(s) 315, 823
XmiI GTMKAC 2 cut(s) 271, 696
XmnI GAANNNNTTC 2 cut(s) 128, 438
XspI CTAG 6 cut(s) 134, 608, 788, 797, 836, 907
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.