Rh5AG343500

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
56226402 .. 56227363
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG343500.1

Sequence Viewer

Length: 927 bp
ATGTATGAGAAGCAAAGTGGGGGTCGACTTTCAAGGGGGCTACACAATTCCATTCGCGCTCCATGCAATCTTTGGTTCAGGCATAAAATTGCAAAGAAGTTGCGGGAAATTACTGACATGATCAAAGCCATTCCAGAGAGGAATAAAAGATACGGTGTTGGCCTTGTAGGAGGAGCAACTACATCCGAAGATATTCAGAAATTGGTGCAGAACCAAGCGGAGTCTTCGTTTTTCATTATGGAAGACGAACTGGTTGGGATTGAAGGCAAGAAGCAAATACTAATGGGATGGCTAATGGATGATGAGCAACACCAAACTGTTATATCTGTGGTGGGCATGGGAGGTTCTGGAAAGACAACTCTAGTTGCCAAGACCTTCACCAATGAACTGGTAAAGAGACATTTTGATTGTTATGCATGGATTACTGTTTCCCAAACTTATGATGTGGTACACTTGTTTCGAAGCTTGATCAGGGAACTCTACAAATCAAGGAAGGAAAATTTCCCTGCAATTCTGAATGCCATGAGCCGCATAGAATTGCTAGAGTTACTAGTTAACTACTTGGAGTCCAAAAAATACCTAGTTGTTCTAGATGACGTGTGGGATATAAAAGTATGGAGAGAAATAAAGGTATCACTTCAAGATAGACAACTTGGAAGTCGAGTCGTACTTACAACTCGAAATGAAGAAGTAGCATCCAACTCTTTTGGAGTTGAAAGCTATATTTACCGTATTCAGCCCCTGCAAAAGAAGGAGGCTTGGGAACTCTTCAGCAGGAAAGCATTCTCAACTAAGCAACACAAAACTTGTCCAACTGAGCTGAAGTCTTTAGCTTGCCAACTTGTGGAGAGGTGTGAAGGCCTTCCTCTCGAAGTCGCTGGATCAATGGGAACAAGTCTGCAACAACTTGAATTGGTATCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

308

Amino Acids

35.27

Weight (kDa)

8.94

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 90 - 265 1.4e-47 NB-ARC domain
AAA_16 PF13191 104 - 200 8.9e-06 AAA ATPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 844
AccI GTMKAC 1 cut(s) 25
AccII CGCG 1 cut(s) 57
AciI CCGC 3 cut(s) 103, 218, 529
AclWI GGATC 1 cut(s) 889
AcsI RAATTY 1 cut(s) 499
AcuI CTGAAG 2 cut(s) 754, 842
AfaI GTAC 2 cut(s) 450, 669
AfiI CCNNNNNNNGG 1 cut(s) 844
AflIII ACRYGT 1 cut(s) 597
AgsI TTSAA 5 cut(s) 33, 263, 641, 716, 911
AhlI ACTAGT 1 cut(s) 550
AjiI CACGTC 1 cut(s) 598
AluBI AGCT 4 cut(s) 465, 720, 820, 833
AluI AGCT 4 cut(s) 465, 720, 820, 833
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 1 cut(s) 889
AlwNI CAGNNNCTG 1 cut(s) 742
AoxI GGCC 2 cut(s) 160, 859
ApoI RAATTY 1 cut(s) 499
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
Asp700I GAANNNNTTC 3 cut(s) 192, 782, 861
AspLEI GCGC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 370
AsuII TTCGAA 1 cut(s) 460
BaeI ACNNNNGTAYC 2 cut(s) 440, 473
BbsI GAAGAC 2 cut(s) 216, 249
BccI CCATC 1 cut(s) 282
BclI TGATCA 2 cut(s) 120, 468
BcoDI GTCTC 1 cut(s) 391
BcuI ACTAGT 1 cut(s) 550
BfaI CTAG 5 cut(s) 362, 542, 551, 581, 590
BisI GCNGC 1 cut(s) 529
BlsI GCNGC 1 cut(s) 530
BmgBI CACGTC 1 cut(s) 598
BmsI GCATC 1 cut(s) 704
BpiI GAAGAC 2 cut(s) 216, 249
Bpu14I TTCGAA 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 844
Bse1I ACTGG 2 cut(s) 255, 393
BseGI GGATG 4 cut(s) 182, 293, 304, 695
BseLI CCNNNNNNNGG 1 cut(s) 844
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 2 cut(s) 255, 393
BseRI GAGGAG 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 162, 861
BslI CCNNNNNNNGG 1 cut(s) 844
BsmAI GTCTC 1 cut(s) 391
BsmI GAATGC 2 cut(s) 523, 782
BsnI GGCC 2 cut(s) 162, 861
Bsp119I TTCGAA 1 cut(s) 460
Bsp143I GATC 3 cut(s) 120, 468, 881
BspACI CCGC 3 cut(s) 103, 218, 529
BspANI GGCC 2 cut(s) 162, 861
BspCNI CTCAG 1 cut(s) 808
BspFNI CGCG 1 cut(s) 57
BspPI GGATC 1 cut(s) 889
BspT104I TTCGAA 1 cut(s) 460
BsrI ACTGG 2 cut(s) 255, 393
BssMI GATC 3 cut(s) 120, 468, 881
Bst4CI ACNGT 4 cut(s) 155, 319, 427, 731
Bst6I CTCTTC 1 cut(s) 773
BstBI TTCGAA 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 835
BstDEI CTNAG 2 cut(s) 792, 816
BstF5I GGATG 4 cut(s) 182, 293, 304, 695
BstFNI CGCG 1 cut(s) 57
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 3 cut(s) 123, 471, 884
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 3 cut(s) 120, 468, 881
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstUI CGCG 1 cut(s) 57
BstV2I GAAGAC 2 cut(s) 216, 249
BstXI CCANNNNNNTGG 1 cut(s) 388
BsuRI GGCC 2 cut(s) 162, 861
BtrI CACGTC 1 cut(s) 598
BtsCI GGATG 4 cut(s) 182, 293, 304, 695
Cac8I GCNNGC 1 cut(s) 835
CaiI CAGNNNCTG 1 cut(s) 742
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 449, 668
CviAII CATG 5 cut(s) 63, 118, 337, 417, 523
CviQI GTAC 2 cut(s) 449, 668
DdeI CTNAG 2 cut(s) 792, 816
DpnI GATC 3 cut(s) 122, 470, 883
DpnII GATC 3 cut(s) 120, 468, 881
Eam1104I CTCTTC 1 cut(s) 773
EarI CTCTTC 1 cut(s) 773
Eco147I AGGCCT 1 cut(s) 861
Eco57I CTGAAG 2 cut(s) 754, 842
EcoT22I ATGCAT 1 cut(s) 418
FaeI CATG 5 cut(s) 66, 121, 340, 420, 526
FatI CATG 5 cut(s) 62, 117, 336, 416, 522
FauI CCCGC 1 cut(s) 96
FbaI TGATCA 2 cut(s) 120, 468
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 529
FokI GGATG 4 cut(s) 169, 300, 311, 682
Fsp4HI GCNGC 1 cut(s) 529
FspBI CTAG 5 cut(s) 362, 542, 551, 581, 590
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 529
HaeIII GGCC 2 cut(s) 162, 861
HhaI GCGC 1 cut(s) 59
Hin1II CATG 5 cut(s) 66, 121, 340, 420, 526
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 2 cut(s) 26, 556
HindII GTYRAC 2 cut(s) 26, 556
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 3 cut(s) 221, 566, 663
HpaI GTTAAC 1 cut(s) 556
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 3 cut(s) 26, 451, 556
Hpy188I TCNGA 3 cut(s) 187, 198, 516
Hpy188III TCNNGA 5 cut(s) 134, 348, 590, 641, 869
Hpy8I GTNNAC 3 cut(s) 26, 451, 556
HpyAV CCTTC 6 cut(s) 257, 385, 487, 745, 851, 872
HpyCH4III ACNGT 4 cut(s) 155, 319, 427, 731
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 7 cut(s) 66, 92, 208, 416, 509, 745, 901
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 2 cut(s) 792, 816
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 5 cut(s) 66, 121, 340, 420, 526
HspAI GCGC 1 cut(s) 57
Ksp22I TGATCA 2 cut(s) 120, 468
KspAI GTTAAC 1 cut(s) 556
Kzo9I GATC 3 cut(s) 120, 468, 881
LmnI GCTCC 2 cut(s) 64, 173
LweI GCATC 1 cut(s) 704
MaeI CTAG 5 cut(s) 362, 542, 551, 581, 590
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 1 cut(s) 546
MalI GATC 3 cut(s) 122, 470, 883
MboI GATC 3 cut(s) 120, 468, 881
MboII GAAGA 5 cut(s) 200, 216, 254, 698, 760
MluCI AATT 8 cut(s) 46, 87, 108, 200, 499, 510, 536, 911
MlyI GAGTC 3 cut(s) 230, 575, 672
MmeI TCCRAC 2 cut(s) 723, 836
MnlI CCTC 6 cut(s) 132, 164, 335, 748, 843, 876
Mph1103I ATGCAT 1 cut(s) 418
MroXI GAANNNNTTC 3 cut(s) 192, 782, 861
MseI TTAA 1 cut(s) 555
Mva1269I GAATGC 2 cut(s) 523, 782
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 3 cut(s) 120, 468, 881
NlaIII CATG 5 cut(s) 66, 121, 340, 420, 526
NsiI ATGCAT 1 cut(s) 418
NspV TTCGAA 1 cut(s) 460
PceI AGGCCT 1 cut(s) 861
PctI GAATGC 2 cut(s) 523, 782
PdmI GAANNNNTTC 3 cut(s) 192, 782, 861
PflMI CCANNNNNTGG 1 cut(s) 844
PkrI GCNGC 1 cut(s) 530
PleI GAGTC 3 cut(s) 229, 574, 671
PpsI GAGTC 3 cut(s) 229, 574, 671
PstNI CAGNNNCTG 1 cut(s) 742
RsaI GTAC 2 cut(s) 450, 669
RsaNI GTAC 2 cut(s) 449, 668
SalI GTCGAC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 1 cut(s) 529
Sau3AI GATC 3 cut(s) 120, 468, 881
SchI GAGTC 3 cut(s) 230, 575, 672
SfaNI GCATC 1 cut(s) 704
SfuI TTCGAA 1 cut(s) 460
SpeI ACTAGT 1 cut(s) 550
Sse9I AATT 8 cut(s) 46, 87, 108, 200, 499, 510, 536, 911
SseBI AGGCCT 1 cut(s) 861
SsiI CCGC 3 cut(s) 103, 218, 529
SspMI CTAG 5 cut(s) 362, 542, 551, 581, 590
StuI AGGCCT 1 cut(s) 861
TaaI ACNGT 4 cut(s) 155, 319, 427, 731
TaiI ACGT 1 cut(s) 600
TaqI TCGA 5 cut(s) 25, 460, 661, 679, 870
TasI AATT 8 cut(s) 46, 87, 108, 200, 499, 510, 536, 911
TauI GCSGC 1 cut(s) 531
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TspDTI ATGAA 3 cut(s) 223, 399, 699
Van91I CCANNNNNTGG 1 cut(s) 844
XapI RAATTY 1 cut(s) 499
XbaI TCTAGA 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XmiI GTMKAC 1 cut(s) 25
XmnI GAANNNNTTC 3 cut(s) 192, 782, 861
XspI CTAG 5 cut(s) 362, 542, 551, 581, 590
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.