Rmu_sc0013020.1_g000002

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013020.1
OG0000110
Physical Location & Seq
Reverse (-)
6504 .. 9266
2763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013020.1_g000002.1.cds

Sequence Viewer

Length: 2763 bp
atggccttgtctgcaacaatcctattaattggaaaacttggggcaattcttgagaacgaaggaacaaccatagctggtgttcgtgatgaagttgacaagattaagctggagctcctaagcatgaaagctttcctggaggatgcggaggccaacaaagcaaaaactgaaggagagaaaatgtgggttgcaagcatcagagacttagccgatggtgttgaagatatcattgatgaattcatgtaccacatgtatgagaagcaaagtggtagtagactatcaagggggctacacaaaaccatttgcattccaaaaactctttggtttagacgtaaaactgcgcagaggttaaaaaaaatcactgaaaagatcaaagacattcctgagaggaatcaaaggtacgatgttggccatgtaggaagaacaagtacttccgaagatattcacaaatgggtgcagaaccaagcggactcttcttttttcattatcgaagatgaactggttgggattgaaggcaagaagcaaatactaatgcggtggttgatggatgaagtgcaacaccaaactgttgtctctgtggttgggatgggaggttctggaaagacaactctggttgccaagaccttcaccaatgaaagggtcaagagacattttgattgttgtgcgtggattaccgtctcccaaacttatgatgtggtagacttgtttcgaagcttgattatggaactccacaaatcaagaaaggaaggtttccctgaaaatttgaatgcgatgagccacagagaattggtagagttactgacgaactacttgggatctaaaaaatacctagttgttctggatgacgtgtgggagataagagtttggagagaaataaaggtatcacttcaagatagacaacttggaagtcgaatagtaattacaactcgaaatgaagaagtagcatccaacttttttggagttgaaagctatgttcaccatattcaacccttgcaaaagaatgaggcttgggagctcttcagcaagaaggcattctcaactaatcagcacaaaacttgtccaactgagcttgagtcattagcttaccaacttgtggaaaagtgtgaaggccttcctttggctattgtgactttaggtggtcttatgtcttctaagaagtcactggatcaatggcaacaagtctgcaacagcttaaactggcatctagataacaattcattgctagagcctgtgaaaaagatcttgttgctgagtttcaatgatttgtcatctcgattgaaacattgcttcctcttttgttctcttttcccggaagatttttcaattaagagaaaaaggcttattagattgtggatagctgaaggatttgttgaaaatgtgacaggggtcacacccaaacaagttgcagatggctatctttggcaactctgcttctgtagcatgttacatgttgttgatagaaatggaacaggaaggccgaaacaagttaagatgcatgatcttatgcgagagcttgctctgtcgacatccgaaaaagaaaagtttggtcatgtgtatgacgggagagaagtaatggaagagatttcaacccgtcgcttgtcaatttacacaacgaataacagaggagaaattaaatcatgcacgggtatgtcaaacattcgttctcttcttgtctttggaactgacatgtcctcattgtctttctcaaatgcactggtttctcgattcaaattgttgaggactctagacttggagggtgtccaaattgataaactgccggacgcagttgtttacttgttcaacttgagatatttaaatttgaagggcactttaatcgaggaacttcccgagtccatagggcgtctccgcaaccttcaatttctgaacatcacggatactaagatactgtcccttccacaaggaattactaagttgctaaacctgcgccatctaattatgtatcgccacactagagattttctggacttcaaacttgcaagtgggacaaaagtgccatcaaatatttgtaacttgcagaatttgcagtgtttatcaattattgaatccaaaggagacactattagacttatcggcaacctgcttcaacttaggagcatcggcatatcaaatttgaaagaaagagataagattgacctttgggtctcaattgaaaagttgactctgcttcaagctctgggattaatggcaagtaatgaagaggaaattcttcctatgaaagcacaatgtccacctcttccgcaccttcaaaagctttctttgattggcaaactgcaaagcggaatacctttttggtttccttcactgcatagtctcaaaaccctgtctctgcattggtccagacttgaagaggatttactacctcaaattcaagcactgcccaatctgacaaggctttatctttgtaatgcatatgttggggaagagttgtgttttcgcaaaggctttgtaaagctgatgagattgcagttgttgaattttgccttggtgaaaaagataactatagaaaaaggggtgatgccaaatcttcgatatttatgggtttgcagctgcaaggaattgaagacagtgccactgggacttgaattcctttctaatctacaaactttgagtctggtagatgtttccatggaagttatacagcccattcggaaaggaggtgcggatcgctctaaagtacaacacatccctgagatcaaacatggtttccaacggtcatccaagagggtctacgaaaacttggcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

920

Amino Acids

105.31

Weight (kDa)

8.96

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2156
Acc16I TGCGCA 1 cut(s) 339
Acc36I ACCTGC 2 cut(s) 1947, 2103
AccB7I CCANNNNNTGG 1 cut(s) 1090
AccI GTMKAC 4 cut(s) 271, 696, 1520, 2745
AciI CCGC 7 cut(s) 143, 464, 532, 1864, 2255, 2295, 2678
AclWI GGATC 3 cut(s) 820, 1170, 2688
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 9 cut(s) 233, 757, 1813, 2035, 2125, 2220, 2382, 2491, 2600
AcuI CTGAAG 3 cut(s) 186, 1000, 1377
AcyI GRCGYC 1 cut(s) 1858
AfaI GTAC 4 cut(s) 242, 398, 427, 2694
AfiI CCNNNNNNNGG 3 cut(s) 633, 1090, 1114
AflIII ACRYGT 4 cut(s) 246, 843, 1444, 1683
AjiI CACGTC 1 cut(s) 844
AjnI CCWGG 1 cut(s) 132
AjuI GAANNNNNNNTTGG 4 cut(s) 2290, 2322, 2483, 2515
AloI GAACNNNNNNTCC 2 cut(s) 574, 606
Alw21I GWGCWC 2 cut(s) 114, 1014
Alw26I GTCTC 9 cut(s) 192, 574, 637, 679, 1865, 2064, 2164, 2333, 2346
AlwI GGATC 3 cut(s) 820, 1170, 2688
Ama87I CYCGRG 1 cut(s) 1844
AoxI GGCC 6 cut(s) 3, 147, 406, 1105, 1472, 2757
ApeKI GCWGC 2 cut(s) 2562, 2565
ApoI RAATTY 9 cut(s) 233, 757, 1813, 2035, 2125, 2220, 2382, 2491, 2600
ArsI GACNNNNNNTTYG 2 cut(s) 2611, 2643
AseI ATTAAT 2 cut(s) 26, 2198
Asp700I GAANNNNTTC 5 cut(s) 128, 438, 1028, 1107, 2223
AspLEI GCGC 2 cut(s) 340, 1944
AspS9I GGNCC 1 cut(s) 2352
AsuC2I CCSGG 1 cut(s) 1307
AsuHPI GGTGA 4 cut(s) 616, 965, 2515, 2542
AsuII TTCGAA 1 cut(s) 706
AvaI CYCGRG 1 cut(s) 1844
AvaII GGWCC 1 cut(s) 2352
BaeGI GKGCMC 1 cut(s) 1826
BalI TGGCCA 1 cut(s) 408
BanII GRGCYC 2 cut(s) 114, 1014
BarI GAAGNNNNNNTAC 4 cut(s) 409, 441, 2355, 2387
BbsI GAAGAC 2 cut(s) 1137, 2585
Bbv12I GWGCWC 2 cut(s) 114, 1014
BbvI GCAGC 2 cut(s) 2552, 2574
BccI CCATC 6 cut(s) 203, 535, 577, 1400, 1953, 2020
BcgI CGANNNNNNTGC 2 cut(s) 1813, 1847
BciT130I CCWGG 1 cut(s) 134
BciVI GTATCC 1 cut(s) 1885
BcnI CCSGG 1 cut(s) 1307
BcoDI GTCTC 9 cut(s) 192, 574, 637, 679, 1865, 2064, 2164, 2333, 2346
BfaI CTAG 5 cut(s) 827, 1202, 1220, 1742, 1968
BfmI CTRYAG 2 cut(s) 1432, 2517
BfuAI ACCTGC 2 cut(s) 1947, 2103
BfuI GTATCC 1 cut(s) 1885
BglII AGATCT 1 cut(s) 1236
BisI GCNGC 2 cut(s) 2563, 2566
BlsI GCNGC 2 cut(s) 2564, 2567
BmcAI AGTACT 1 cut(s) 427
Bme1390I CCNGG 2 cut(s) 134, 1307
Bme18I GGWCC 1 cut(s) 2352
BmeT110I CYCGRG 1 cut(s) 1844
BmgBI CACGTC 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 2352
BmrFI CCNGG 2 cut(s) 134, 1307
BmrI ACTGGG 1 cut(s) 2600
BmsI GCATC 7 cut(s) 130, 201, 950, 1207, 1479, 2121, 2523
BmuI ACTGGG 1 cut(s) 2600
BoxI GACNNNNGTC 1 cut(s) 1382
BpiI GAAGAC 2 cut(s) 1137, 2585
BpmI CTGGAG 2 cut(s) 128, 155
Bpu10I CCTNAGC 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 706
BpuEI CTTGAG 3 cut(s) 71, 1088, 1822
BpuMI CCSGG 1 cut(s) 1307
BsaBI GATNNNNATC 1 cut(s) 1410
BsaHI GRCGYC 1 cut(s) 1858
BsaI GGTCTC 1 cut(s) 2164
BsaJI CCNNGG 2 cut(s) 2499, 2643
Bsc4I CCNNNNNNNGG 3 cut(s) 633, 1090, 1114
Bse1I ACTGG 5 cut(s) 501, 1164, 1199, 1716, 2595
Bse3DI GCAATG 2 cut(s) 1214, 1279
Bse8I GATNNNNATC 1 cut(s) 1410
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 2499, 2643
BseGI GGATG 8 cut(s) 145, 550, 588, 844, 941, 1523, 2700, 2732
BseJI GATNNNNATC 1 cut(s) 1410
BseLI CCNNNNNNNGG 3 cut(s) 633, 1090, 1114
BseMI GCAATG 2 cut(s) 1214, 1279
BseMII CTCAG 4 cut(s) 372, 1053, 1238, 2697
BseNI ACTGG 5 cut(s) 501, 1164, 1199, 1716, 2595
BseRI GAGGAG 1 cut(s) 1635
BseSI GKGCMC 1 cut(s) 1826
BseXI GCAGC 2 cut(s) 2552, 2574
BsgI GTGCAG 1 cut(s) 473
BshFI GGCC 6 cut(s) 5, 149, 408, 1107, 1474, 2759
BsiHKAI GWGCWC 2 cut(s) 114, 1014
BsiHKCI CYCGRG 1 cut(s) 1844
BsiSI CCGG 2 cut(s) 1307, 1775
BslFI GGGAC 3 cut(s) 1891, 2014, 2607
BslI CCNNNNNNNGG 3 cut(s) 633, 1090, 1114
BsmAI GTCTC 9 cut(s) 192, 574, 637, 679, 1865, 2064, 2164, 2333, 2346
BsmBI CGTCTC 2 cut(s) 679, 1865
BsmFI GGGAC 3 cut(s) 1891, 2014, 2607
BsmI GAATGC 3 cut(s) 303, 769, 1028
BsnI GGCC 6 cut(s) 5, 149, 408, 1107, 1474, 2759
Bso31I GGTCTC 1 cut(s) 2164
BsoBI CYCGRG 1 cut(s) 1844
Bsp119I TTCGAA 1 cut(s) 706
Bsp1286I GDGCHC 3 cut(s) 114, 1014, 1826
Bsp143I GATC 7 cut(s) 366, 812, 1162, 1236, 1495, 2680, 2709
Bsp19I CCATGG 1 cut(s) 2643
BspACI CCGC 7 cut(s) 143, 464, 532, 1864, 2255, 2295, 2678
BspANI GGCC 6 cut(s) 5, 149, 408, 1107, 1474, 2759
BspCNI CTCAG 4 cut(s) 373, 1054, 1239, 2698
BspMI ACCTGC 2 cut(s) 1947, 2103
BspPI GGATC 3 cut(s) 820, 1170, 2688
BspQI GCTCTTC 1 cut(s) 1019
BspT104I TTCGAA 1 cut(s) 706
BspTNI GGTCTC 1 cut(s) 2164
BsrDI GCAATG 2 cut(s) 1214, 1279
BsrI ACTGG 5 cut(s) 501, 1164, 1199, 1716, 2595
BssECI CCNNGG 2 cut(s) 2499, 2643
BssMI GATC 7 cut(s) 366, 812, 1162, 1236, 1495, 2680, 2709
BssNI GRCGYC 1 cut(s) 1858
BssT1I CCWWGG 2 cut(s) 2499, 2643
Bst2UI CCWGG 1 cut(s) 134
Bst4CI ACNGT 5 cut(s) 565, 673, 1905, 2584, 2730
Bst6I CTCTTC 8 cut(s) 475, 1019, 1569, 1668, 2208, 2256, 2358, 2433
BstACI GRCGYC 1 cut(s) 1858
BstAPI GCANNNNNTGC 1 cut(s) 2038
BstBI TTCGAA 1 cut(s) 706
BstC8I GCNNGC 2 cut(s) 190, 1512
BstDSI CCRYGG 1 cut(s) 2643
BstF5I GGATG 8 cut(s) 145, 550, 588, 844, 941, 1523, 2700, 2732
BstHHI GCGC 2 cut(s) 340, 1944
BstKTI GATC 7 cut(s) 369, 815, 1165, 1239, 1498, 2683, 2712
BstMAI GTCTC 9 cut(s) 192, 574, 637, 679, 1865, 2064, 2164, 2333, 2346
BstMBI GATC 7 cut(s) 366, 812, 1162, 1236, 1495, 2680, 2709
BstMWI GCNNNNNNNGC 5 cut(s) 11, 155, 1434, 1939, 2038
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 4 cut(s) 250, 1441, 1448, 1687
BstPAI GACNNNNGTC 1 cut(s) 1382
BstSCI CCNGG 2 cut(s) 132, 1305
BstSFI CTRYAG 2 cut(s) 1432, 2517
BstSLI GKGCMC 1 cut(s) 1826
BstV1I GCAGC 2 cut(s) 2552, 2574
BstV2I GAAGAC 2 cut(s) 1137, 2585
BstX2I RGATCY 2 cut(s) 812, 1236
BstYI RGATCY 2 cut(s) 812, 1236
BsuI GTATCC 1 cut(s) 1885
BsuRI GGCC 6 cut(s) 5, 149, 408, 1107, 1474, 2759
BtgI CCRYGG 1 cut(s) 2643
BtgZI GCGATG 1 cut(s) 782
BtrI CACGTC 1 cut(s) 844
BtsCI GGATG 8 cut(s) 145, 550, 588, 844, 941, 1523, 2700, 2732
BtsI GCAGTG 3 cut(s) 2048, 2318, 2390
BtsIMutI CAGTG 8 cut(s) 357, 1157, 1709, 2048, 2318, 2390, 2588, 2589
BveI ACCTGC 2 cut(s) 1947, 2103
Cac8I GCNNGC 2 cut(s) 190, 1512
CfoI GCGC 2 cut(s) 340, 1944
Cfr13I GGNCC 1 cut(s) 2352
CseI GACGC 2 cut(s) 1787, 1847
Csp6I GTAC 4 cut(s) 241, 397, 426, 2693
CviQI GTAC 4 cut(s) 241, 397, 426, 2693
DpnI GATC 7 cut(s) 368, 814, 1164, 1238, 1497, 2682, 2711
DpnII GATC 7 cut(s) 366, 812, 1162, 1236, 1495, 2680, 2709
DraI TTTAAA 1 cut(s) 1812
DrdI GACNNNNNNGTC 1 cut(s) 2156
DseDI GACNNNNNNGTC 1 cut(s) 2156
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 8 cut(s) 475, 1019, 1569, 1668, 2208, 2256, 2358, 2433
EarI CTCTTC 8 cut(s) 475, 1019, 1569, 1668, 2208, 2256, 2358, 2433
Ecl136II GAGCTC 2 cut(s) 112, 1012
Eco130I CCWWGG 2 cut(s) 2499, 2643
Eco147I AGGCCT 1 cut(s) 1107
Eco24I GRGCYC 2 cut(s) 114, 1014
Eco31I GGTCTC 1 cut(s) 2164
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 2352
Eco53kI GAGCTC 2 cut(s) 112, 1012
Eco57I CTGAAG 3 cut(s) 186, 1000, 1377
Eco88I CYCGRG 1 cut(s) 1844
EcoICRI GAGCTC 2 cut(s) 112, 1012
EcoRI GAATTC 2 cut(s) 233, 2600
EcoRII CCWGG 1 cut(s) 132
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 2499, 2643
EcoT22I ATGCAT 2 cut(s) 1494, 2428
EcoT38I GRGCYC 2 cut(s) 114, 1014
ErhI CCWWGG 2 cut(s) 2499, 2643
Esp3I CGTCTC 2 cut(s) 679, 1865
FaqI GGGAC 3 cut(s) 1891, 2014, 2607
FauNDI CATATG 1 cut(s) 2428
FblI GTMKAC 4 cut(s) 271, 696, 1520, 2745
Fnu4HI GCNGC 2 cut(s) 2563, 2566
FokI GGATG 8 cut(s) 152, 557, 595, 851, 928, 1510, 2687, 2719
FriOI GRGCYC 2 cut(s) 114, 1014
Fsp4HI GCNGC 2 cut(s) 2563, 2566
FspBI CTAG 5 cut(s) 827, 1202, 1220, 1742, 1968
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 2 cut(s) 339, 1943
GluI GCNGC 2 cut(s) 2563, 2566
GsuI CTGGAG 2 cut(s) 128, 155
HaeIII GGCC 6 cut(s) 5, 149, 408, 1107, 1474, 2759
HapII CCGG 2 cut(s) 1307, 1775
HgaI GACGC 2 cut(s) 1787, 1847
HhaI GCGC 2 cut(s) 340, 1944
Hin1I GRCGYC 1 cut(s) 1858
Hin6I GCGC 2 cut(s) 338, 1942
HinP1I GCGC 2 cut(s) 338, 1942
HincII GTYRAC 3 cut(s) 94, 1521, 2175
HindII GTYRAC 3 cut(s) 94, 1521, 2175
HindIII AAGCTT 3 cut(s) 126, 709, 2267
HinfI GANTC 9 cut(s) 388, 467, 1070, 1722, 1738, 1847, 2060, 2176, 2626
HpaII CCGG 2 cut(s) 1307, 1775
HphI GGTGA 4 cut(s) 616, 965, 2515, 2542
Hpy166II GTNNAC 9 cut(s) 94, 272, 697, 973, 1521, 1789, 2175, 2246, 2746
Hpy188I TCNGA 6 cut(s) 197, 433, 1528, 1881, 2403, 2667
Hpy8I GTNNAC 9 cut(s) 94, 272, 697, 973, 1521, 1789, 2175, 2246, 2746
Hpy99I CGWCG 1 cut(s) 1593
HpyCH4III ACNGT 5 cut(s) 565, 673, 1905, 2584, 2730
HpyCH4IV ACGT 2 cut(s) 328, 843
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 155, 1434, 1939, 2038
HpySE526I ACGT 2 cut(s) 328, 843
Hsp92I GRCGYC 1 cut(s) 1858
HspAI GCGC 2 cut(s) 338, 1942
Kzo9I GATC 7 cut(s) 366, 812, 1162, 1236, 1495, 2680, 2709
LguI GCTCTTC 1 cut(s) 1019
LmnI GCTCC 4 cut(s) 109, 117, 1009, 2109
Lsp1109I GCAGC 2 cut(s) 2552, 2574
LweI GCATC 7 cut(s) 130, 201, 950, 1207, 1479, 2121, 2523
MaeI CTAG 5 cut(s) 827, 1202, 1220, 1742, 1968
MaeII ACGT 2 cut(s) 328, 843
MaeIII GTNAC 7 cut(s) 792, 1123, 1155, 1375, 1384, 1440, 2024
MalI GATC 7 cut(s) 368, 814, 1164, 1238, 1497, 2682, 2711
MboI GATC 7 cut(s) 366, 812, 1162, 1236, 1495, 2680, 2709
MfeI CAATTG 1 cut(s) 2163
MflI RGATCY 2 cut(s) 812, 1236
MhlI GDGCHC 3 cut(s) 114, 1014, 1826
MlsI TGGCCA 1 cut(s) 408
MluNI TGGCCA 1 cut(s) 408
MlyI GAGTC 6 cut(s) 461, 1079, 1732, 1856, 2170, 2635
MmeI TCCRAC 3 cut(s) 969, 1082, 2749
Mox20I TGGCCA 1 cut(s) 408
Mph1103I ATGCAT 2 cut(s) 1494, 2428
MroXI GAANNNNTTC 5 cut(s) 128, 438, 1028, 1107, 2223
MscI TGGCCA 1 cut(s) 408
MslI CAYNNNNRTG 3 cut(s) 249, 1551, 1643
Msp20I TGGCCA 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 2565
MspI CCGG 2 cut(s) 1307, 1775
MspR9I CCNGG 2 cut(s) 134, 1307
MunI CAATTG 1 cut(s) 2163
Mva1269I GAATGC 3 cut(s) 303, 769, 1028
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 5 cut(s) 11, 155, 1434, 1939, 2038
NciI CCSGG 1 cut(s) 1307
NcoI CCATGG 1 cut(s) 2643
NdeI CATATG 1 cut(s) 2428
NdeII GATC 7 cut(s) 366, 812, 1162, 1236, 1495, 2680, 2709
NmuCI GTSAC 4 cut(s) 1123, 1155, 1375, 1384
NsbI TGCGCA 1 cut(s) 339
NsiI ATGCAT 2 cut(s) 1494, 2428
NspI RCATGY 4 cut(s) 250, 1441, 1448, 1687
NspV TTCGAA 1 cut(s) 706
PceI AGGCCT 1 cut(s) 1107
PciI ACATGT 3 cut(s) 246, 1444, 1683
PciSI GCTCTTC 1 cut(s) 1019
PctI GAATGC 3 cut(s) 303, 769, 1028
PdmI GAANNNNTTC 5 cut(s) 128, 438, 1028, 1107, 2223
PfeI GAWTC 3 cut(s) 388, 1722, 2060
PflMI CCANNNNNTGG 1 cut(s) 1090
PfoI TCCNGGA 2 cut(s) 132, 1305
PkrI GCNGC 2 cut(s) 2564, 2567
PleI GAGTC 6 cut(s) 461, 1078, 1732, 1855, 2170, 2634
PpsI GAGTC 6 cut(s) 461, 1078, 1732, 1855, 2170, 2634
PscI ACATGT 3 cut(s) 246, 1444, 1683
PshAI GACNNNNGTC 1 cut(s) 1382
PshBI ATTAAT 2 cut(s) 26, 2198
Psp124BI GAGCTC 2 cut(s) 114, 1014
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
PspPI GGNCC 1 cut(s) 2352
PsuI RGATCY 2 cut(s) 812, 1236
PvuII CAGCTG 1 cut(s) 2565
RsaI GTAC 4 cut(s) 242, 398, 427, 2694
RsaNI GTAC 4 cut(s) 241, 397, 426, 2693
RseI CAYNNNNRTG 3 cut(s) 249, 1551, 1643
SacI GAGCTC 2 cut(s) 114, 1014
SalI GTCGAC 1 cut(s) 1519
SapI GCTCTTC 1 cut(s) 1019
SatI GCNGC 2 cut(s) 2563, 2566
Sau3AI GATC 7 cut(s) 366, 812, 1162, 1236, 1495, 2680, 2709
Sau96I GGNCC 1 cut(s) 2352
ScaI AGTACT 1 cut(s) 427
SchI GAGTC 6 cut(s) 461, 1079, 1732, 1856, 2170, 2635
ScrFI CCNGG 2 cut(s) 134, 1307
SduI GDGCHC 3 cut(s) 114, 1014, 1826
SfaNI GCATC 7 cut(s) 130, 201, 950, 1207, 1479, 2121, 2523
SfcI CTRYAG 2 cut(s) 1432, 2517
SfuI TTCGAA 1 cut(s) 706
SinI GGWCC 1 cut(s) 2352
SmiI ATTTAAAT 1 cut(s) 1812
SmiMI CAYNNNNRTG 3 cut(s) 249, 1551, 1643
SmlI CTYRAG 3 cut(s) 50, 1067, 1801
SmoI CTYRAG 3 cut(s) 50, 1067, 1801
SseBI AGGCCT 1 cut(s) 1107
SsiI CCGC 7 cut(s) 143, 464, 532, 1864, 2255, 2295, 2678
SspI AATATT 1 cut(s) 2020
SspMI CTAG 5 cut(s) 827, 1202, 1220, 1742, 1968
SstI GAGCTC 2 cut(s) 114, 1014
StuI AGGCCT 1 cut(s) 1107
StyD4I CCNGG 2 cut(s) 132, 1305
StyI CCWWGG 2 cut(s) 2499, 2643
SwaI ATTTAAAT 1 cut(s) 1812
TaaI ACNGT 5 cut(s) 565, 673, 1905, 2584, 2730
TaiI ACGT 2 cut(s) 331, 846
TaqI TCGA 9 cut(s) 486, 706, 907, 925, 1270, 1520, 1720, 1833, 2545
TatI WGTACW 2 cut(s) 425, 2692
TfiI GAWTC 3 cut(s) 388, 1722, 2060
TscAI CASTG 8 cut(s) 364, 1164, 1716, 2048, 2325, 2397, 2589, 2595
TseFI GTSAC 4 cut(s) 1123, 1155, 1375, 1384
TseI GCWGC 2 cut(s) 2562, 2565
Tsp45I GTSAC 4 cut(s) 1123, 1155, 1375, 1384
TspGWI ACGGA 1 cut(s) 1904
TspRI CASTG 8 cut(s) 364, 1164, 1716, 2048, 2325, 2397, 2589, 2595
Van91I CCANNNNNTGG 1 cut(s) 1090
VpaK11BI GGWCC 1 cut(s) 2352
VspI ATTAAT 2 cut(s) 26, 2198
XapI RAATTY 9 cut(s) 233, 757, 1813, 2035, 2125, 2220, 2382, 2491, 2600
XbaI TCTAGA 2 cut(s) 1201, 1741
XceI RCATGY 4 cut(s) 250, 1441, 1448, 1687
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmiI GTMKAC 4 cut(s) 271, 696, 1520, 2745
XmnI GAANNNNTTC 5 cut(s) 128, 438, 1028, 1107, 2223
XspI CTAG 5 cut(s) 827, 1202, 1220, 1742, 1968
ZrmI AGTACT 1 cut(s) 427
Zsp2I ATGCAT 2 cut(s) 1494, 2428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.