Rh5CG146300

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
13150778 .. 13156180
5403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG146300.1

Sequence Viewer

Length: 657 bp
ATGGCCTCATTTGTAATGGACCTCTTAATCGGAAAACTTGTGACGATTCTTGAGAACGAAGGAACAACCATAGCTGGTGTTCGTGACGAAGTTGATAAGGTTAAGGAGGAGTTTCTAAGCATGAAAGCTTTCCTAGTGGATACAGAGGCTAACAAAGCAAAAACTGAAGGAGAGAAATTGTGGGTTGCAAGAATCAGAGACTTAACCCATGATGTTGAAGATATCATTGATGAATTCTTGTATCACATGTACGAGAAGCGAAGTGGGGGTCGACTTTCAAGGGGGCTACACAAAACCATTCGCGCTCCAAGTAATCTTTGGTTCAGGCATAAACTTGCAAACAAGTTGCAGAAAATTACTGAAATGATCAAAGCCATTCCAGAGAGGAATCAAAGGTACAGTGTTGGCCTTGTTGGAGGAGCAACTACATCTGAAGATATTCACAAATTGGTGCAGAACCAAGCTGAGTCTTCGTTTTTCATTATGGAAGACGAACTGGTTGGGATTAAAGGTAAGAAGCAAATACTAATGGGATGGCTCATGGATGAAGAGCAACACCAAACTACTATATCTGGGGTTGGCATGGGAGGCAATGGCTGCATAGAAATTGACACCCGAAACAGGCAGCTCCGGAAGGCTCTTCATGGCGGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

218

Amino Acids

24.67

Weight (kDa)

7.07

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 89 1.7e-21 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 271
AccII CGCG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 630
AciI CCGC 1 cut(s) 648
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 2 cut(s) 186, 453
AfaI GTAC 2 cut(s) 251, 398
AfiI CCNNNNNNNGG 1 cut(s) 621
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 2 cut(s) 218, 279
AluBI AGCT 4 cut(s) 74, 128, 464, 628
AluI AGCT 4 cut(s) 74, 128, 464, 628
Alw26I GTCTC 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 630
AoxI GGCC 2 cut(s) 3, 406
ApeKI GCWGC 2 cut(s) 597, 625
ApoI RAATTY 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 2 cut(s) 128, 438
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 19
AvaII GGWCC 1 cut(s) 19
BbsI GAAGAC 2 cut(s) 462, 495
BbvI GCAGC 2 cut(s) 584, 637
BccI CCATC 1 cut(s) 528
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 134
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 2 cut(s) 598, 626
BlsI GCNGC 2 cut(s) 599, 627
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BpiI GAAGAC 2 cut(s) 462, 495
BpuEI CTTGAG 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 630
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse1I ACTGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 598
BseAI TCCGGA 1 cut(s) 630
BseGI GGATG 2 cut(s) 539, 550
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMI GCAATG 1 cut(s) 598
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 2 cut(s) 122, 432
BseXI GCAGC 2 cut(s) 584, 637
BsgI GTGCAG 1 cut(s) 473
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 5, 408
BsiSI CCGG 1 cut(s) 631
BslI CCNNNNNNNGG 1 cut(s) 621
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 2 cut(s) 5, 408
Bsp13I TCCGGA 1 cut(s) 630
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 1 cut(s) 648
BspANI GGCC 2 cut(s) 5, 408
BspCNI CTCAG 1 cut(s) 457
BspEI TCCGGA 1 cut(s) 630
BspFNI CGCG 1 cut(s) 303
BspQI GCTCTTC 2 cut(s) 543, 645
BsrDI GCAATG 1 cut(s) 598
BsrI ACTGG 1 cut(s) 501
BssMI GATC 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 2 cut(s) 543, 645
BstAPI GCANNNNNTGC 1 cut(s) 597
BstDEI CTNAG 2 cut(s) 116, 465
BstF5I GGATG 2 cut(s) 539, 550
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 3 cut(s) 155, 588, 597
BstNSI RCATGY 1 cut(s) 250
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 584, 637
BstV2I GAAGAC 2 cut(s) 462, 495
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 5, 408
BtsCI GGATG 2 cut(s) 539, 550
BtsIMutI CAGTG 1 cut(s) 406
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 2 cut(s) 250, 397
CviAII CATG 6 cut(s) 121, 209, 247, 541, 583, 644
CviQI GTAC 2 cut(s) 250, 397
DdeI CTNAG 2 cut(s) 116, 465
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
Eam1104I CTCTTC 2 cut(s) 543, 645
EarI CTCTTC 2 cut(s) 543, 645
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 186, 453
EcoRI GAATTC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 223
FaeI CATG 6 cut(s) 124, 212, 250, 544, 586, 647
FatI CATG 6 cut(s) 120, 208, 246, 540, 582, 643
FauI CCCGC 1 cut(s) 641
FbaI TGATCA 1 cut(s) 366
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 598, 626
FokI GGATG 2 cut(s) 546, 557
Fsp4HI GCNGC 2 cut(s) 598, 626
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 304
GluI GCNGC 2 cut(s) 598, 626
HaeIII GGCC 2 cut(s) 5, 408
HapII CCGG 1 cut(s) 631
HhaI GCGC 1 cut(s) 305
Hin1II CATG 6 cut(s) 124, 212, 250, 544, 586, 647
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 4 cut(s) 46, 192, 388, 467
HpaII CCGG 1 cut(s) 631
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 3 cut(s) 32, 197, 433
Hpy188III TCNNGA 4 cut(s) 50, 83, 380, 631
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 3 cut(s) 53, 161, 628
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 5 cut(s) 188, 338, 349, 454, 600
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 588, 597
HpyF3I CTNAG 2 cut(s) 116, 465
Hsp92II CATG 6 cut(s) 124, 212, 250, 544, 586, 647
HspAI GCGC 1 cut(s) 303
Kpn2I TCCGGA 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 1 cut(s) 366
LguI GCTCTTC 2 cut(s) 543, 645
LmnI GCTCC 3 cut(s) 310, 419, 633
LpnPI CCDG 7 cut(s) 60, 310, 393, 482, 558, 607, 644
Lsp1109I GCAGC 2 cut(s) 584, 637
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 2 cut(s) 40, 83
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 6 cut(s) 230, 446, 462, 500, 560, 632
MluCI AATT 5 cut(s) 176, 233, 354, 446, 606
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 7 cut(s) 16, 32, 100, 139, 378, 410, 581
MroI TCCGGA 1 cut(s) 630
MroXI GAANNNNTTC 2 cut(s) 128, 438
MseI TTAA 4 cut(s) 26, 102, 203, 507
MspI CCGG 1 cut(s) 631
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 155, 588, 597
NdeII GATC 1 cut(s) 366
NlaIII CATG 6 cut(s) 124, 212, 250, 544, 586, 647
NmuCI GTSAC 2 cut(s) 40, 83
NspI RCATGY 1 cut(s) 250
PciI ACATGT 1 cut(s) 246
PciSI GCTCTTC 2 cut(s) 543, 645
PdmI GAANNNNTTC 2 cut(s) 128, 438
PfeI GAWTC 3 cut(s) 46, 192, 388
PkrI GCNGC 2 cut(s) 599, 627
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PscI ACATGT 1 cut(s) 246
PspPI GGNCC 1 cut(s) 19
RsaI GTAC 2 cut(s) 251, 398
RsaNI GTAC 2 cut(s) 250, 397
SalI GTCGAC 1 cut(s) 270
SapI GCTCTTC 2 cut(s) 543, 645
SaqAI TTAA 4 cut(s) 26, 102, 203, 507
SatI GCNGC 2 cut(s) 598, 626
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 476
SetI ASST 8 cut(s) 24, 76, 102, 130, 398, 466, 514, 630
SinI GGWCC 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 5 cut(s) 176, 233, 354, 446, 606
SsiI CCGC 1 cut(s) 648
SspMI CTAG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 1 cut(s) 271
TasI AATT 5 cut(s) 176, 233, 354, 446, 606
TfiI GAWTC 3 cut(s) 46, 192, 388
Tru1I TTAA 4 cut(s) 26, 102, 203, 507
Tru9I TTAA 4 cut(s) 26, 102, 203, 507
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 2 cut(s) 40, 83
TseI GCWGC 2 cut(s) 597, 625
Tsp45I GTSAC 2 cut(s) 40, 83
TspDTI ATGAA 5 cut(s) 137, 246, 469, 561, 632
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 2 cut(s) 128, 438
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.