Rmu_sc0001382.1_g000019

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001382.1
OG0000110
Physical Location & Seq
Forward (+)
55474 .. 61086
5613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001382.1_g000019.1.cds

Sequence Viewer

Length: 3351 bp
atggcctcagctgcaacagatctgttggttattcgccaaattgttggcattcttgagaacgaagcatccttcattgccggggttggagatcaagttgatgagattaagcgggagctgattagcatgaaatccttcttgtatgatgctgagggcaagggagcacgcacacaaggagaggagacgtgggtagcaagcgtaagagatttggcctatgatgttgaagacgttattgatgaattcatgtatcatatgtatgagcagaaaattggaggtcgattttcgaggtggctctacaaaaccattaacattccaaagaatatctggtatagacgtcaaattgcaaacaagttacagaaaatcactacaatgattaaggccattccagagagaaatcaaagatatggtttcgctgttatagaagggacaaacacttctcttgatatgcgcaaatgggtgcaaaaccaagcggattcttctcttttcatcaaggaggaagaacttgttggaattgaagacaaaaagcaaatgttattgggatggttgatgaatgaagaacagcaccaaattgttgtctccgtggttggcatgggaggatcaggaaagacaactctagttgccaagaccttcaccaatgaagttgtcaagaaacatttcgactgttatgcatgggttactgtctcccaaagttatgtgattgaagacttacttagaagcttgatcaaggaattctacagaacaatgaaggatgagaaccctgaaaatttgaatgtcatgagctatagagagttgctagagatgctggtaaacttcttggagtctaaaaggtacctaattgtattggatgacgtgtgggatgtcaacctgtgggaagaaattaagtttgcatttccagatgcacaatgtggaagtcgaatcatgctcacaactcgaaaagaacacatagcatcatattcttttggggttgaaagccattttcacagtgtccaacccttgaaaaagaattatgcatgggagcttttcagcaagaaagcattctccacttgtcataacaaaatttgtccaccggagcttgagccgttagcttgggaactagtagaaaagtgtgaaggtcttcctctggctattgtcgctttaggtggtgttatgtcttctaagaagtcgttggatcaatggagagaagtctacaacagcttaaattggcatttgagtaacaattcattgctaaaacctgttaaaagtattttgctgcttagttttaatgatttgccataccgattgaagcattgtttcctctattgttcacttttcccggaagactatttgatcatcaataaaaaagtcataagattgtggattgctgaaggatttgtcgaacaagtcaaagggctcacactagaagaagttgcagcgggctatcttatggaacttgtttctcgtagtatgctacaagaaaggtacactagttggactccagcatgtaagatgcatgatcttatacgtgagcttgctctgtcaataggagaaaaagaaaaattctgtgctgtatatgatgggagcgaaagaatggaagaaactggagcacgccgtctgtcaattcaaacagttgaaggagaaattgaatgttgcaaaggtctgtcacaacttcgttctttccttgtgtttgtcactgatgcactttcagtgtctttctcaaaaaaattggcttctgaattgaaacttttgagggttctagacttggagaatgccccaattgttaaaattccagatgaactaatgtacttattcaacttgaaatatctcaatttgagaggaactctagttaaggaacttccagaagccataggaaagcttcgaaaccttcaaacattggacttcagattcacaaatgtagaggtacttccaagaggaatttccaagttgatcaacttgcgccatctactgggttaccgttccttgagggattttatgcttctcaaaaaccgtattggggttaaagcaccatcagatattagtaagttgaaaaagttgcaaaatctttcatgtattgaatcagaagggaacttcattacacttctaagaggcatgacccaacttttaacccttggcattgcaaatgtgatagaaagagatgcaagagacctatgtgttgcacttgaagagatgaagattcttcgcagcctagacatatgggtaacaaatcaagaggaatatcttcgagttgacacattatcttcacctcctcgccacctggggcatatttgtttggcaggcaaactggaaaagatacctgtttggttttattcactccacagcctcacatccttgcatctacattggtccagactcaaagaagatttgctacctcacattgaaggactggcctgtctggagagtgttacccttgttaatgcctatgttgggaaagagttaagcttcactagaggctttttaaagcttacacggctaagcttgcaaaattttccattattggaaaagataacaatagaaaaaggggtgatgtcaaatctccagttcttagaacttcaaagatgcatgggactaacgacattgccacaaggttttgagtatcttactaaactagaagggtacttatttgagactgttccagagcaacttaaggagtccatacaaggagctgtggattattatcaaaaggcagaacgtttcaagatgataagaggtgatgccaaatctgcagaagtgaaaagacagacctccatgtctcgatcactccaaaacatgacgcttctttgcatcttttatataatagcacctgatgaaggggaatctcttgcagtcaatgcaatgttttcagctctttctgctcttcaaaagctgtatttgactgtcaagcaggaaaggttgcagtggggtggtgcccagttcttatcctgggatagctgcaaggaattaaagacattgccacatggtcttgagtaccacactcaactagaaacactgagattgaactctgttcctgtgaaacttatagagtccatacgagatggagaaagattgacattcgaagattgtatccagctcatggaaagagcaagtgtaaagctggaaagaccaataacctttccatctgatgaagggaggttcctacgagcttcgaacgccttggaagaagacttcgttgcagaatttgtgcctttggagggagctgaagaaggagtaggtagcttcttgggcagcatctgttcccagcggtccttaggcactgctcttgatgcttctgatgatgatgatgatgatgagagaagaatgagagcaacaagagtgaagagcaagcacttgttcctccaagaacctaacattgttgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1116

Amino Acids

127.98

Weight (kDa)

6.0

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 2382, 2740
AatII GACGTC 1 cut(s) 334
Acc16I TGCGCA 1 cut(s) 446
Acc65I GGTACC 1 cut(s) 825
AccB1I GGYRCC 2 cut(s) 825, 2897
AccB7I CCANNNNNTGG 2 cut(s) 1939, 3064
AccI GTMKAC 1 cut(s) 1182
AciI CCGC 4 cut(s) 109, 467, 1409, 3232
AclI AACGTT 1 cut(s) 2683
AclWI GGATC 2 cut(s) 601, 1173
AcsI RAATTY 9 cut(s) 236, 725, 760, 1053, 1532, 1758, 1908, 2476, 3167
AcuI CTGAAG 3 cut(s) 1380, 1858, 3210
AcyI GRCGYC 1 cut(s) 331
AdeI CACNNNGTG 1 cut(s) 902
AfaI GTAC 6 cut(s) 827, 1457, 1778, 1896, 2609, 2960
AfiI CCNNNNNNNGG 6 cut(s) 1939, 1987, 2418, 2801, 3064, 3182
AflII CTTAAG 1 cut(s) 2636
AflIII ACRYGT 1 cut(s) 846
AhlI ACTAGT 2 cut(s) 1090, 1460
AjiI CACGTC 2 cut(s) 183, 847
AjnI CCWGG 2 cut(s) 2247, 2912
AjuI GAANNNNNNNTTGG 4 cut(s) 486, 518, 1894, 1926
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
Alw21I GWGCWC 2 cut(s) 163, 1582
Alw26I GTCTC 6 cut(s) 173, 577, 682, 2130, 2612, 2748
AlwI GGATC 2 cut(s) 601, 1173
AlwNI CAGNNNCTG 1 cut(s) 3222
AoxI GGCC 4 cut(s) 3, 207, 375, 2379
ApeKI GCWGC 6 cut(s) 11, 1246, 1406, 2175, 2922, 3216
ApoI RAATTY 9 cut(s) 236, 725, 760, 1053, 1532, 1758, 1908, 2476, 3167
Asp700I GAANNNNTTC 5 cut(s) 131, 650, 1031, 1110, 2211
Asp718I GGTACC 1 cut(s) 825
AspLEI GCGC 2 cut(s) 447, 1932
AspS9I GGNCC 2 cut(s) 2337, 3234
AsuC2I CCSGG 2 cut(s) 79, 1310
AsuHPI GGTGA 4 cut(s) 619, 2226, 2527, 2714
AsuII TTCGAA 3 cut(s) 1852, 3045, 3137
AvaII GGWCC 2 cut(s) 2337, 3234
AxyI CCTNAGG 1 cut(s) 3238
BaeGI GKGCMC 1 cut(s) 2902
BaeI ACNNNNGTAYC 2 cut(s) 1447, 1480
BanI GGYRCC 2 cut(s) 825, 2897
BanII GRGCYC 1 cut(s) 1389
BarI GAAGNNNNNNTAC 4 cut(s) 1881, 1913, 2343, 2375
BbsI GAAGAC 7 cut(s) 228, 519, 705, 1103, 1140, 1320, 3159
Bbv12I GWGCWC 2 cut(s) 163, 1582
BbvCI CCTCAGC 2 cut(s) 7, 147
BbvI GCAGC 5 cut(s) 1233, 1418, 2187, 2909, 3228
BccI CCATC 6 cut(s) 531, 1544, 1941, 2008, 3020, 3115
BceAI ACGGC 3 cut(s) 1060, 1569, 2477
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 2 cut(s) 2249, 2914
BciVI GTATCC 1 cut(s) 3065
BclI TGATCA 3 cut(s) 717, 1323, 1920
BcnI CCSGG 2 cut(s) 79, 1310
BcoDI GTCTC 6 cut(s) 173, 577, 682, 2130, 2612, 2748
BcuI ACTAGT 2 cut(s) 1090, 1460
BfmI CTRYAG 3 cut(s) 730, 778, 2715
BfrI CTTAAG 1 cut(s) 2636
BfuI GTATCC 1 cut(s) 3065
BglII AGATCT 1 cut(s) 19
BisI GCNGC 6 cut(s) 12, 1247, 1407, 2176, 2923, 3217
BlpI GCTNAGC 1 cut(s) 2465
BlsI GCNGC 6 cut(s) 13, 1248, 1408, 2177, 2924, 3218
Bme1390I CCNGG 4 cut(s) 79, 1310, 2249, 2914
Bme18I GGWCC 2 cut(s) 2337, 3234
BmgBI CACGTC 2 cut(s) 183, 847
BmgT120I GGNCC 2 cut(s) 2337, 3234
BmiI GGNNCC 3 cut(s) 827, 2899, 3125
BmrFI CCNGG 4 cut(s) 79, 1310, 2249, 2914
BmrI ACTGGG 2 cut(s) 1949, 2896
BmuI ACTGGG 2 cut(s) 1949, 2896
BpiI GAAGAC 7 cut(s) 228, 519, 705, 1103, 1140, 1320, 3159
BplI GAGNNNNNCTC 2 cut(s) 1798, 1830
BpmI CTGGAG 4 cut(s) 1455, 1596, 2408, 2513
Bpu10I CCTNAGC 2 cut(s) 7, 147
Bpu1102I GCTNAGC 1 cut(s) 2465
Bpu14I TTCGAA 3 cut(s) 1852, 3045, 3137
BpuEI CTTGAG 4 cut(s) 74, 1091, 1975, 2975
BpuMI CCSGG 2 cut(s) 79, 1310
BsaAI YACGTR 1 cut(s) 1499
BsaBI GATNNNNATC 1 cut(s) 2667
BsaHI GRCGYC 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 2130
BsaJI CCNNGG 6 cut(s) 78, 576, 2101, 2248, 2913, 3144
BsaWI WCCGGW 1 cut(s) 1063
BsaXI ACNNNNNCTCC 2 cut(s) 78, 108
Bsc4I CCNNNNNNNGG 6 cut(s) 1939, 1987, 2418, 2801, 3064, 3182
Bse1I ACTGG 6 cut(s) 1579, 1944, 2280, 2382, 2530, 2902
Bse21I CCTNAGG 1 cut(s) 3238
Bse3DI GCAATG 6 cut(s) 72, 1217, 2106, 2567, 2832, 2939
Bse8I GATNNNNATC 1 cut(s) 2667
BseBI CCWGG 2 cut(s) 2249, 2914
BseDI CCNNGG 6 cut(s) 78, 576, 2101, 2248, 2913, 3144
BseGI GGATG 6 cut(s) 65, 542, 751, 847, 859, 2318
BseJI GATNNNNATC 1 cut(s) 2667
BseLI CCNNNNNNNGG 6 cut(s) 1939, 1987, 2418, 2801, 3064, 3182
BseMI GCAATG 6 cut(s) 72, 1217, 2106, 2567, 2832, 2939
BseMII CTCAG 3 cut(s) 21, 138, 2972
BseNI ACTGG 6 cut(s) 1579, 1944, 2280, 2382, 2530, 2902
BseRI GAGGAG 2 cut(s) 191, 2229
BseSI GKGCMC 1 cut(s) 2902
BseXI GCAGC 5 cut(s) 1233, 1418, 2187, 2909, 3228
BseYI CCCAGC 1 cut(s) 3228
BshFI GGCC 4 cut(s) 5, 209, 377, 2381
BshNI GGYRCC 2 cut(s) 825, 2897
BsiHKAI GWGCWC 2 cut(s) 163, 1582
BsiSI CCGG 3 cut(s) 78, 1064, 1310
BslFI GGGAC 2 cut(s) 436, 2571
BslI CCNNNNNNNGG 6 cut(s) 1939, 1987, 2418, 2801, 3064, 3182
BsmAI GTCTC 6 cut(s) 173, 577, 682, 2130, 2612, 2748
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 2 cut(s) 436, 2571
BsmI GAATGC 3 cut(s) 48, 1031, 1747
BsnI GGCC 4 cut(s) 5, 209, 377, 2381
Bso31I GGTCTC 1 cut(s) 2130
Bsp119I TTCGAA 3 cut(s) 1852, 3045, 3137
Bsp1286I GDGCHC 4 cut(s) 163, 1389, 1582, 2902
Bsp143I GATC 9 cut(s) 19, 88, 593, 717, 1165, 1323, 1489, 1920, 2747
Bsp1720I GCTNAGC 1 cut(s) 2465
BspACI CCGC 4 cut(s) 109, 467, 1409, 3232
BspANI GGCC 4 cut(s) 5, 209, 377, 2381
BspCNI CTCAG 3 cut(s) 20, 139, 2973
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 3 cut(s) 827, 2899, 3125
BspMAI CTGCAG 1 cut(s) 2719
BspPI GGATC 2 cut(s) 601, 1173
BspQI GCTCTTC 2 cut(s) 2853, 3302
BspT104I TTCGAA 3 cut(s) 1852, 3045, 3137
BspT107I GGYRCC 2 cut(s) 825, 2897
BspTI CTTAAG 1 cut(s) 2636
BspTNI GGTCTC 1 cut(s) 2130
BsrDI GCAATG 6 cut(s) 72, 1217, 2106, 2567, 2832, 2939
BsrI ACTGG 6 cut(s) 1579, 1944, 2280, 2382, 2530, 2902
BssECI CCNNGG 6 cut(s) 78, 576, 2101, 2248, 2913, 3144
BssMI GATC 9 cut(s) 19, 88, 593, 717, 1165, 1323, 1489, 1920, 2747
BssNI GRCGYC 1 cut(s) 331
BssT1I CCWWGG 2 cut(s) 2101, 3144
Bst2UI CCWGG 2 cut(s) 2249, 2914
Bst4CI ACNGT 8 cut(s) 659, 676, 980, 1603, 1949, 1982, 2623, 2869
Bst6I CTCTTC 3 cut(s) 2151, 2853, 3302
BstACI GRCGYC 1 cut(s) 331
BstAFI CTTAAG 1 cut(s) 2636
BstAPI GCANNNNNTGC 1 cut(s) 2822
BstBAI YACGTR 1 cut(s) 1499
BstBI TTCGAA 3 cut(s) 1852, 3045, 3137
BstC8I GCNNGC 8 cut(s) 163, 193, 1411, 1506, 1582, 2269, 2471, 3314
BstDSI CCRYGG 1 cut(s) 576
BstEII GGTNACC 1 cut(s) 1943
BstENI CCTNNNNNAGG 1 cut(s) 2799
BstF5I GGATG 6 cut(s) 65, 542, 751, 847, 859, 2318
BstHHI GCGC 2 cut(s) 447, 1932
BstKTI GATC 9 cut(s) 22, 91, 596, 720, 1168, 1326, 1492, 1923, 2750
BstMAI GTCTC 6 cut(s) 173, 577, 682, 2130, 2612, 2748
BstMBI GATC 9 cut(s) 19, 88, 593, 717, 1165, 1323, 1489, 1920, 2747
BstNI CCWGG 2 cut(s) 2249, 2914
BstNSI RCATGY 1 cut(s) 1479
BstPI GGTNACC 1 cut(s) 1943
BstSCI CCNGG 4 cut(s) 77, 1308, 2247, 2912
BstSFI CTRYAG 3 cut(s) 730, 778, 2715
BstSLI GKGCMC 1 cut(s) 2902
BstV1I GCAGC 5 cut(s) 1233, 1418, 2187, 2909, 3228
BstV2I GAAGAC 7 cut(s) 228, 519, 705, 1103, 1140, 1320, 3159
BstX2I RGATCY 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 44
BstYI RGATCY 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 3238
BsuI GTATCC 1 cut(s) 3065
BsuRI GGCC 4 cut(s) 5, 209, 377, 2381
BtgI CCRYGG 1 cut(s) 576
BtrI CACGTC 2 cut(s) 183, 847
BtsCI GGATG 6 cut(s) 65, 542, 751, 847, 859, 2318
BtsI GCAGTG 2 cut(s) 2894, 3243
BtsIMutI CAGTG 6 cut(s) 985, 1665, 1686, 2894, 2978, 3243
Cac8I GCNNGC 8 cut(s) 163, 193, 1411, 1506, 1582, 2269, 2471, 3314
CaiI CAGNNNCTG 1 cut(s) 3222
CciI TCATGA 1 cut(s) 771
CfoI GCGC 2 cut(s) 447, 1932
Cfr13I GGNCC 2 cut(s) 2337, 3234
CseI GACGC 1 cut(s) 2773
Csp6I GTAC 6 cut(s) 826, 1456, 1777, 1895, 2608, 2959
CviQI GTAC 6 cut(s) 826, 1456, 1777, 1895, 2608, 2959
DpnI GATC 9 cut(s) 21, 90, 595, 719, 1167, 1325, 1491, 1922, 2749
DpnII GATC 9 cut(s) 19, 88, 593, 717, 1165, 1323, 1489, 1920, 2747
DraI TTTAAA 1 cut(s) 2451
DraIII CACNNNGTG 1 cut(s) 902
DrdI GACNNNNNNGTC 2 cut(s) 2382, 2740
DseDI GACNNNNNNGTC 2 cut(s) 2382, 2740
Eam1104I CTCTTC 3 cut(s) 2151, 2853, 3302
EarI CTCTTC 3 cut(s) 2151, 2853, 3302
Eco130I CCWWGG 2 cut(s) 2101, 3144
Eco24I GRGCYC 1 cut(s) 1389
Eco31I GGTCTC 1 cut(s) 2130
Eco47I GGWCC 2 cut(s) 2337, 3234
Eco57I CTGAAG 3 cut(s) 1380, 1858, 3210
Eco81I CCTNAGG 1 cut(s) 3238
Eco91I GGTNACC 1 cut(s) 1943
EcoNI CCTNNNNNAGG 1 cut(s) 2799
EcoO65I GGTNACC 1 cut(s) 1943
EcoRI GAATTC 2 cut(s) 236, 725
EcoRII CCWGG 2 cut(s) 2247, 2912
EcoT14I CCWWGG 2 cut(s) 2101, 3144
EcoT22I ATGCAT 4 cut(s) 667, 1009, 1488, 2555
EcoT38I GRGCYC 1 cut(s) 1389
ErhI CCWWGG 2 cut(s) 2101, 3144
Esp3I CGTCTC 1 cut(s) 173
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FaqI GGGAC 2 cut(s) 436, 2571
FauI CCCGC 2 cut(s) 102, 1402
FauNDI CATATG 2 cut(s) 249, 2186
FbaI TGATCA 3 cut(s) 717, 1323, 1920
FblI GTMKAC 1 cut(s) 1182
Fnu4HI GCNGC 6 cut(s) 12, 1247, 1407, 2176, 2923, 3217
FokI GGATG 6 cut(s) 52, 549, 758, 854, 866, 2305
FriOI GRGCYC 1 cut(s) 1389
Fsp4HI GCNGC 6 cut(s) 12, 1247, 1407, 2176, 2923, 3217
FspI TGCGCA 1 cut(s) 446
GlaI GCGC 2 cut(s) 446, 1931
GluI GCNGC 6 cut(s) 12, 1247, 1407, 2176, 2923, 3217
GsaI CCCAGC 1 cut(s) 3232
GsuI CTGGAG 4 cut(s) 1455, 1596, 2408, 2513
HaeIII GGCC 4 cut(s) 5, 209, 377, 2381
HapII CCGG 3 cut(s) 78, 1064, 1310
HgaI GACGC 1 cut(s) 2773
HhaI GCGC 2 cut(s) 447, 1932
Hin1I GRCGYC 1 cut(s) 331
Hin6I GCGC 2 cut(s) 445, 1930
HinP1I GCGC 2 cut(s) 445, 1930
HincII GTYRAC 2 cut(s) 859, 2221
HindII GTYRAC 2 cut(s) 859, 2221
HindIII AAGCTT 5 cut(s) 712, 1847, 2431, 2453, 2467
HpaII CCGG 3 cut(s) 78, 1064, 1310
HphI GGTGA 4 cut(s) 619, 2226, 2527, 2714
Hpy166II GTNNAC 7 cut(s) 805, 859, 1061, 1183, 1301, 1458, 2221
Hpy188I TCNGA 6 cut(s) 1708, 1877, 2005, 2053, 3112, 3262
Hpy8I GTNNAC 7 cut(s) 805, 859, 1061, 1183, 1301, 1458, 2221
HpyCH4III ACNGT 8 cut(s) 659, 676, 980, 1603, 1949, 1982, 2623, 2869
HpyCH4IV ACGT 6 cut(s) 182, 225, 331, 846, 1498, 2683
HpySE526I ACGT 6 cut(s) 182, 225, 331, 846, 1498, 2683
Hsp92I GRCGYC 1 cut(s) 331
HspAI GCGC 2 cut(s) 445, 1930
KpnI GGTACC 1 cut(s) 829
Ksp22I TGATCA 3 cut(s) 717, 1323, 1920
Kzo9I GATC 9 cut(s) 19, 88, 593, 717, 1165, 1323, 1489, 1920, 2747
LguI GCTCTTC 2 cut(s) 2853, 3302
LmnI GCTCC 8 cut(s) 112, 158, 1012, 1066, 1554, 1577, 2654, 3185
Lsp1109I GCAGC 5 cut(s) 1233, 1418, 2187, 2909, 3228
MaeII ACGT 6 cut(s) 182, 225, 331, 846, 1498, 2683
MaeIII GTNAC 8 cut(s) 348, 670, 1208, 1635, 1663, 1943, 2191, 2395
MalI GATC 9 cut(s) 21, 90, 595, 719, 1167, 1325, 1491, 1922, 2749
MboI GATC 9 cut(s) 19, 88, 593, 717, 1165, 1323, 1489, 1920, 2747
MfeI CAATTG 1 cut(s) 1749
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 4 cut(s) 163, 1389, 1582, 2902
MlyI GAGTC 5 cut(s) 824, 1462, 2337, 2651, 3023
MmeI TCCRAC 5 cut(s) 64, 484, 1009, 1143, 1445
Mph1103I ATGCAT 4 cut(s) 667, 1009, 1488, 2555
MroXI GAANNNNTTC 5 cut(s) 131, 650, 1031, 1110, 2211
MslI CAYNNNNRTG 2 cut(s) 252, 365
MspA1I CMGCKG 3 cut(s) 11, 1409, 3232
MspCI CTTAAG 1 cut(s) 2636
MspI CCGG 3 cut(s) 78, 1064, 1310
MspR9I CCNGG 4 cut(s) 79, 1310, 2249, 2914
MunI CAATTG 1 cut(s) 1749
Mva1269I GAATGC 3 cut(s) 48, 1031, 1747
MvaI CCWGG 2 cut(s) 2249, 2914
NciI CCSGG 2 cut(s) 79, 1310
NdeI CATATG 2 cut(s) 249, 2186
NdeII GATC 9 cut(s) 19, 88, 593, 717, 1165, 1323, 1489, 1920, 2747
NlaIV GGNNCC 3 cut(s) 827, 2899, 3125
NmuCI GTSAC 2 cut(s) 1635, 1663
NsbI TGCGCA 1 cut(s) 446
NsiI ATGCAT 4 cut(s) 667, 1009, 1488, 2555
NspI RCATGY 1 cut(s) 1479
NspV TTCGAA 3 cut(s) 1852, 3045, 3137
PagI TCATGA 1 cut(s) 771
PciSI GCTCTTC 2 cut(s) 2853, 3302
PctI GAATGC 3 cut(s) 48, 1031, 1747
PdmI GAANNNNTTC 5 cut(s) 131, 650, 1031, 1110, 2211
PfeI GAWTC 6 cut(s) 470, 912, 1878, 2048, 2167, 2807
PflMI CCANNNNNTGG 2 cut(s) 1939, 3064
PfoI TCCNGGA 1 cut(s) 1308
PkrI GCNGC 6 cut(s) 13, 1248, 1408, 2177, 2924, 3218
PleI GAGTC 5 cut(s) 823, 1462, 2337, 2650, 3022
PpsI GAGTC 5 cut(s) 823, 1462, 2337, 2650, 3022
Ppu21I YACGTR 1 cut(s) 1499
Psp1406I AACGTT 1 cut(s) 2683
Psp6I CCWGG 2 cut(s) 2247, 2912
PspEI GGTNACC 1 cut(s) 1943
PspFI CCCAGC 1 cut(s) 3228
PspGI CCWGG 2 cut(s) 2247, 2912
PspN4I GGNNCC 3 cut(s) 827, 2899, 3125
PspPI GGNCC 2 cut(s) 2337, 3234
PstI CTGCAG 1 cut(s) 2719
PstNI CAGNNNCTG 1 cut(s) 3222
PsuI RGATCY 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 6 cut(s) 827, 1457, 1778, 1896, 2609, 2960
RsaNI GTAC 6 cut(s) 826, 1456, 1777, 1895, 2608, 2959
RseI CAYNNNNRTG 2 cut(s) 252, 365
SapI GCTCTTC 2 cut(s) 2853, 3302
SatI GCNGC 6 cut(s) 12, 1247, 1407, 2176, 2923, 3217
Sau3AI GATC 9 cut(s) 19, 88, 593, 717, 1165, 1323, 1489, 1920, 2747
Sau96I GGNCC 2 cut(s) 2337, 3234
SchI GAGTC 5 cut(s) 824, 1462, 2337, 2651, 3023
ScrFI CCNGG 4 cut(s) 79, 1310, 2249, 2914
SduI GDGCHC 4 cut(s) 163, 1389, 1582, 2902
SfcI CTRYAG 3 cut(s) 730, 778, 2715
SfuI TTCGAA 3 cut(s) 1852, 3045, 3137
SinI GGWCC 2 cut(s) 2337, 3234
SmiMI CAYNNNNRTG 2 cut(s) 252, 365
SmlI CTYRAG 5 cut(s) 53, 1070, 1954, 2636, 2954
SmoI CTYRAG 5 cut(s) 53, 1070, 1954, 2636, 2954
SpeI ACTAGT 2 cut(s) 1090, 1460
SsiI CCGC 4 cut(s) 109, 467, 1409, 3232
StyD4I CCNGG 4 cut(s) 77, 1308, 2247, 2912
StyI CCWWGG 2 cut(s) 2101, 3144
TaaI ACNGT 8 cut(s) 659, 676, 980, 1603, 1949, 1982, 2623, 2869
TaiI ACGT 6 cut(s) 185, 228, 334, 849, 1501, 2686
TatI WGTACW 1 cut(s) 1776
TfiI GAWTC 6 cut(s) 470, 912, 1878, 2048, 2167, 2807
TscAI CASTG 6 cut(s) 985, 1672, 1686, 2894, 2985, 3250
TseFI GTSAC 2 cut(s) 1635, 1663
TseI GCWGC 6 cut(s) 11, 1246, 1406, 2175, 2922, 3216
Tsp45I GTSAC 2 cut(s) 1635, 1663
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 6 cut(s) 985, 1672, 1686, 2894, 2985, 3250
Van91I CCANNNNNTGG 2 cut(s) 1939, 3064
Vha464I CTTAAG 1 cut(s) 2636
VpaK11BI GGWCC 2 cut(s) 2337, 3234
XagI CCTNNNNNAGG 1 cut(s) 2799
XapI RAATTY 9 cut(s) 236, 725, 760, 1053, 1532, 1758, 1908, 2476, 3167
XbaI TCTAGA 1 cut(s) 1729
XceI RCATGY 1 cut(s) 1479
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 1182
XmnI GAANNNNTTC 5 cut(s) 131, 650, 1031, 1110, 2211
ZraI GACGTC 1 cut(s) 332
Zsp2I ATGCAT 4 cut(s) 667, 1009, 1488, 2555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.