Rw5G032450

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
54915746 .. 54920179
4434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032450.1

Sequence Viewer

Length: 2778 bp
ATGGCCTTGTCTGTTACGGACCTCTTAATTGGAAAACTTGCGACAATTCTTGAGAACGAAGGAACAACCATAGCAGGTGTTCGCCATGAAGTTGATAAGATTAAGGAGGAGTTTCTAAGCATGAAAGCTTTCCTACTGGATGCGGAGGCCAACAAACCAAAAACTGAAGGACAGAAATTGTGGGTTGCAAGAATCAGAGACTTGGCCTATGATGTTGAAGATATCATTGATGAATTCATGTATCACATGTATGAGAAGCAAACTGGGGGTCGACTTTCAAGGGGGCTACACAAAACCATTCGCGCTCCATGCAATCTTTGGTTCAGGCATAAAATTGCAAAGAAGTTGCGGAAAATTACTGACATGATCAAAGCCATTCCAGAGAGGAATAAAAGATACGGTGTTGGCCTTGTAGGAGGAGCAACTACATCCGAACATATTCAGAAATTGGTGCAGAACCAAGCGGAGTCTTCGTTTTTCATTATGGAAGACGAACTGGTTGGGATTGAAGGCAAGAAGCAAATACTAATGGGATGGCTAATGGATGACGAGCAACACCAAACTGTTATATCTGTGGTGGGCATGGGAGGTTCTGGAAAGACAACTCTAGTTGCCAAGACCTTCACCAATGAACTGGTAAAGAGACATTTTGATTGTTATGCATGGATTACTGTTTCCCAAACTTATGATGTGGTACACTTGTTTCGAAGCTTGATCAGGGAACTCTACAAATCAAGGAAGGAAAATTTCCCTGCAATTCTGAATGCCATGAGCCGCATAGAATTGCTAGAGTTACTAGTTAACTACTTGGAGTCCAAAAAATACCTAGTTGTTCTAGATGACGTGTGGGATATAAAAGTATGGAGAGAAATAAAGGTATCACTTCAAGATAGACAACTTGGAAGTCGAGTCGTACTTACAACTCGAAATGAAGAAGTAGCATCCAACTCTTTTGGAGTTGAAAGCTATGTTTACCATATTCAGCCCCTGCAAAAGAATGAGGCTTGGGAACTCATCAGCAGGAAAGCATTCTCAACTAAGCAACACAAAACTTGTCCGACTGAGCTGAAGTCATTAGCTTGCCAACTTGTGGAGAAGTGTGGAGGCCTTCCTCTCGGTATTGTGGCTTTAGGTGGTCTTATGTCTTCTAAGAAGTCGCTGGATCAATGGCAACAAGTCTACAACAACTTGAATTGGTATCTACATAACAATTCATCGCTAGACCCTGTGAGAAACATTTTGTTGCTGAGTTTCAATGATTTGCCATCTCAACTGAAGCAGTGCTTCCTCTATTGTTCCCTTTTTCCTGAAGATTATCTATTTAAAAGAAAAAGGCTGACTAGATTGTGGATAGCGGAAGGATTTGTTGAAAATGTGAAAGGGGTCACGCTCGAAGAAGTTGCTGATGGGTATCTTCGGGAACTCTGCTTCCGTAGCATGTTACAGGTTGCTGATGGCTTTGTTTCCATAACATCTTTGGGAAGGCCGAAAAAATTTAAGATGCATGATTTGATGCGAGAGCTTGCTTTGTCAACAGCCGAAAAAGAAAAGTTTGGTTATGTATATGACGGGAGAGAAGTAATGGAAGAGATCTCAACCCGTCGCTTGTCAATTCACAGAATGGGAGGAGGACTTAAATCATGGCGAGGTATGTCAAAGATTCGTTCTCTTCTTGTATTTTCCACTGACAGGTCCTCATTGTCTTTCTTAAATACACTGGTTTCTCGATTAAAATTGTTGAGGACTCTAGACTTGGAGGATGTCCAAATTGATAAACTGCCCGGTGCAGTTGTTTACTTGTTCAACTTGAGATACTTAAATTTGAAGGGCACTTTAATTGAGGAACTTCCAGAGTCCATAAGGCATCTCTGCAACCTTCAATTTCTGAACATTAGGGATTCTAAGATAGAGTCACTTCCACAAGGAATTACGAGGTTGCTGAATCTGCGCAATCTAATTATGTATCGCTACACTGGGAACCTGGACTTCAAAGGTGGGATTGGGACAAAAGCGCCATCAAATATTTGTAAGTTGCAGAAATTGCAAAGTATATCAATAATTGAATCAGACGGGGACACTTGTAGACTTGTTGGAAACATGACTCAACTTAAGAGCATCGGCATATCGAATGTGAATGAAAGAGATGAGATTGACCTTTGGGTCTCAATTAAGAAGTTCACTCTGCTTCAATCTCTAGGTTTAATGGCAAGTAATGATGAGGAAATCCTTCCGGTGAAAGCACAGTGTCCACCTCTTCCGCACCTTCGAAAGCTTATTTTGGTTGGCAGACTGCAAAATGGAATACCTTGGTTTTCTTCACTGCATAGCCTCACAACTCTGGTTCTGCATTGGTCAAGACTTGAAGAGGATTTACTACCTCAAATTGAAGCACTGCTCAATCTGACAAGGCTTTATCTTTGTAATGCATATGTTGGGGAAGAGTTGTGTTTCCGCAGAGGCTTTGTAAAGTTGATGAGGTTGGAGTTGTTGAATTTTGCCTCGGTGAAAAAGATAACTATAGAAAATGGGGTGATGCCAAATCTCCGGTACTTATGCATTAACAGTTTCATGGAGTTAAAGATGGTGCCACTGGGCTTTGAATACCTTTCTACTCTACAATATTTGGGCCTGAAAGATGTTCCCATGGAAGTTATTAGGCCCATTCGGAAAGGAGGTGTGGATCACTCTAAAGTACAACACATTCCTGAGATCATACATCAATCATATTGTCTTAGATGTTTCTTCCTAGAACAAATGCACTTTGAGTACAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

925

Amino Acids

106.3

Weight (kDa)

9.02

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 92 2.6e-23 Rx N-terminal domain
NB-ARC PF00931 172 - 347 3.7e-46 NB-ARC domain
WHD_DRP PF23559 434 - 509 3.4e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 553 - 874 4.2e-35 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
AasI GACNNNNNNGTC 1 cut(s) 2159
Acc16I TGCGCA 1 cut(s) 1949
Acc36I ACCTGC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 2584
AccB7I CCANNNNNTGG 1 cut(s) 1090
AccI GTMKAC 3 cut(s) 271, 1179, 2083
AccII CGCG 1 cut(s) 303
AciI CCGC 7 cut(s) 143, 349, 464, 775, 1355, 2258, 2452
AclWI GGATC 2 cut(s) 1170, 2688
AcsI RAATTY 5 cut(s) 233, 745, 1493, 1819, 2491
AcuI CTGAAG 4 cut(s) 186, 1088, 1295, 1329
AfaI GTAC 5 cut(s) 696, 915, 2549, 2694, 2768
AfiI CCNNNNNNNGG 2 cut(s) 1090, 1689
AflII CTTAAG 1 cut(s) 2108
AflIII ACRYGT 2 cut(s) 246, 843
AhlI ACTAGT 1 cut(s) 796
AjiI CACGTC 1 cut(s) 844
AjnI CCWGG 1 cut(s) 1980
AloI GAACNNNNNNTCC 2 cut(s) 1413, 1445
AluBI AGCT 7 cut(s) 128, 711, 966, 1066, 1079, 1522, 2272
AluI AGCT 7 cut(s) 128, 711, 966, 1066, 1079, 1522, 2272
Alw26I GTCTC 3 cut(s) 192, 637, 2167
AlwI GGATC 2 cut(s) 1170, 2688
AlwNI CAGNNNCTG 1 cut(s) 988
AoxI GGCC 8 cut(s) 3, 147, 204, 406, 1105, 1484, 2626, 2657
ApoI RAATTY 5 cut(s) 233, 745, 1493, 1819, 2491
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 4 cut(s) 128, 438, 1028, 2226
AspLEI GCGC 3 cut(s) 305, 1950, 2014
AspS9I GGNCC 4 cut(s) 19, 1692, 2626, 2658
AsuC2I CCSGG 1 cut(s) 1782
AsuHPI GGTGA 4 cut(s) 616, 2245, 2515, 2542
AsuII TTCGAA 2 cut(s) 706, 2266
AvaII GGWCC 2 cut(s) 19, 1692
BaeGI GKGCMC 1 cut(s) 1832
BaeI ACNNNNGTAYC 2 cut(s) 686, 719
BanI GGYRCC 1 cut(s) 2584
BarI GAAGNNNNNNTAC 2 cut(s) 2355, 2387
BbsI GAAGAC 3 cut(s) 462, 495, 1137
BccI CCATC 6 cut(s) 528, 1273, 1400, 1448, 2023, 2575
BcgI CGANNNNNNTGC 2 cut(s) 1382, 1416
BciT130I CCWGG 1 cut(s) 1982
BclI TGATCA 2 cut(s) 366, 714
BcnI CCSGG 1 cut(s) 1782
BcoDI GTCTC 3 cut(s) 192, 637, 2167
BcuI ACTAGT 1 cut(s) 796
BfmI CTRYAG 1 cut(s) 2517
BfoI RGCGCY 1 cut(s) 2015
BfrI CTTAAG 1 cut(s) 2108
BfuAI ACCTGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 1590
BisI GCNGC 1 cut(s) 775
BlsI GCNGC 1 cut(s) 776
Bme1390I CCNGG 2 cut(s) 1782, 1982
Bme18I GGWCC 2 cut(s) 19, 1692
BmgBI CACGTC 1 cut(s) 844
BmgT120I GGNCC 4 cut(s) 19, 1692, 2626, 2658
BmiI GGNNCC 2 cut(s) 1979, 2586
BmrFI CCNGG 2 cut(s) 1782, 1982
BmrI ACTGGG 3 cut(s) 273, 1983, 2600
BmsI GCATC 7 cut(s) 130, 950, 1491, 1503, 1873, 2124, 2523
BmuI ACTGGG 3 cut(s) 273, 1983, 2600
BpiI GAAGAC 3 cut(s) 462, 495, 1137
Bpu14I TTCGAA 2 cut(s) 706, 2266
BpuEI CTTGAG 2 cut(s) 71, 1828
BpuMI CCSGG 1 cut(s) 1782
BsaBI GATNNNNATC 1 cut(s) 1410
BsaI GGTCTC 1 cut(s) 2167
BsaJI CCNNGG 3 cut(s) 2306, 2499, 2643
BsaWI WCCGGW 2 cut(s) 2230, 2544
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 1090, 1689
Bse1I ACTGG 7 cut(s) 141, 268, 501, 639, 1722, 1978, 2595
Bse8I GATNNNNATC 1 cut(s) 1410
BseBI CCWGG 1 cut(s) 1982
BseDI CCNNGG 3 cut(s) 2306, 2499, 2643
BseGI GGATG 6 cut(s) 145, 428, 539, 550, 941, 1765
BseJI GATNNNNATC 1 cut(s) 1410
BseLI CCNNNNNNNGG 2 cut(s) 1090, 1689
BseMII CTCAG 3 cut(s) 1053, 1238, 2697
BseNI ACTGG 7 cut(s) 141, 268, 501, 639, 1722, 1978, 2595
BseRI GAGGAG 3 cut(s) 122, 432, 1641
BseSI GKGCMC 1 cut(s) 1832
BsgI GTGCAG 2 cut(s) 473, 1806
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 8 cut(s) 5, 149, 206, 408, 1107, 1486, 2628, 2659
BshNI GGYRCC 1 cut(s) 2584
BsiSI CCGG 3 cut(s) 1782, 2231, 2545
BslFI GGGAC 2 cut(s) 2017, 2087
BslI CCNNNNNNNGG 2 cut(s) 1090, 1689
BsmAI GTCTC 3 cut(s) 192, 637, 2167
BsmFI GGGAC 2 cut(s) 2017, 2087
BsmI GAATGC 2 cut(s) 769, 1028
BsnI GGCC 8 cut(s) 5, 149, 206, 408, 1107, 1486, 2628, 2659
Bso31I GGTCTC 1 cut(s) 2167
Bsp119I TTCGAA 2 cut(s) 706, 2266
Bsp1286I GDGCHC 1 cut(s) 1832
Bsp143I GATC 6 cut(s) 366, 714, 1162, 1590, 2680, 2709
Bsp19I CCATGG 1 cut(s) 2643
BspACI CCGC 7 cut(s) 143, 349, 464, 775, 1355, 2258, 2452
BspANI GGCC 8 cut(s) 5, 149, 206, 408, 1107, 1486, 2628, 2659
BspCNI CTCAG 3 cut(s) 1054, 1239, 2698
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 1979, 2586
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 1170, 2688
BspT104I TTCGAA 2 cut(s) 706, 2266
BspT107I GGYRCC 1 cut(s) 2584
BspTI CTTAAG 1 cut(s) 2108
BspTNI GGTCTC 1 cut(s) 2167
BsrI ACTGG 7 cut(s) 141, 268, 501, 639, 1722, 1978, 2595
BssECI CCNNGG 3 cut(s) 2306, 2499, 2643
BssMI GATC 6 cut(s) 366, 714, 1162, 1590, 2680, 2709
BssT1I CCWWGG 2 cut(s) 2306, 2643
Bst2UI CCWGG 1 cut(s) 1982
Bst4CI ACNGT 5 cut(s) 401, 565, 673, 2244, 2564
Bst6I CTCTTC 5 cut(s) 1581, 1674, 2259, 2358, 2433
BstAFI CTTAAG 1 cut(s) 2108
BstAPI GCANNNNNTGC 1 cut(s) 2041
BstBI TTCGAA 2 cut(s) 706, 2266
BstC8I GCNNGC 2 cut(s) 1081, 1524
BstDEI CTNAG 8 cut(s) 116, 1038, 1062, 1149, 1247, 1902, 2706, 2732
BstDSI CCRYGG 1 cut(s) 2643
BstF5I GGATG 6 cut(s) 145, 428, 539, 550, 941, 1765
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 2015
BstHHI GCGC 3 cut(s) 305, 1950, 2014
BstKTI GATC 6 cut(s) 369, 717, 1165, 1593, 2683, 2712
BstMAI GTCTC 3 cut(s) 192, 637, 2167
BstMBI GATC 6 cut(s) 366, 714, 1162, 1590, 2680, 2709
BstMWI GCNNNNNNNGC 4 cut(s) 309, 1434, 1945, 2041
BstNI CCWGG 1 cut(s) 1982
BstNSI RCATGY 2 cut(s) 250, 1441
BstSCI CCNGG 2 cut(s) 1780, 1980
BstSFI CTRYAG 1 cut(s) 2517
BstSLI GKGCMC 1 cut(s) 1832
BstUI CGCG 1 cut(s) 303
BstV2I GAAGAC 3 cut(s) 462, 495, 1137
BstX2I RGATCY 1 cut(s) 1590
BstXI CCANNNNNNTGG 1 cut(s) 634
BstYI RGATCY 1 cut(s) 1590
BsuRI GGCC 8 cut(s) 5, 149, 206, 408, 1107, 1486, 2628, 2659
BtgI CCRYGG 1 cut(s) 2643
BtgZI GCGATG 1 cut(s) 1200
BtrI CACGTC 1 cut(s) 844
BtsCI GGATG 6 cut(s) 145, 428, 539, 550, 941, 1765
BtsI GCAGTG 3 cut(s) 1286, 2318, 2390
BtsIMutI CAGTG 8 cut(s) 1286, 1683, 1715, 1971, 2249, 2318, 2390, 2588
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 2 cut(s) 1081, 1524
CaiI CAGNNNCTG 1 cut(s) 988
CfoI GCGC 3 cut(s) 305, 1950, 2014
Cfr13I GGNCC 4 cut(s) 19, 1692, 2626, 2658
Csp6I GTAC 5 cut(s) 695, 914, 2548, 2693, 2767
CviQI GTAC 5 cut(s) 695, 914, 2548, 2693, 2767
DdeI CTNAG 8 cut(s) 116, 1038, 1062, 1149, 1247, 1902, 2706, 2732
DpnI GATC 6 cut(s) 368, 716, 1164, 1592, 2682, 2711
DpnII GATC 6 cut(s) 366, 714, 1162, 1590, 2680, 2709
DraI TTTAAA 1 cut(s) 1324
DrdI GACNNNNNNGTC 1 cut(s) 2159
DseDI GACNNNNNNGTC 1 cut(s) 2159
Eam1104I CTCTTC 5 cut(s) 1581, 1674, 2259, 2358, 2433
EarI CTCTTC 5 cut(s) 1581, 1674, 2259, 2358, 2433
Eco130I CCWWGG 2 cut(s) 2306, 2643
Eco147I AGGCCT 1 cut(s) 1107
Eco31I GGTCTC 1 cut(s) 2167
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 19, 1692
Eco57I CTGAAG 4 cut(s) 186, 1088, 1295, 1329
EcoO109I RGGNCCY 1 cut(s) 1692
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 1980
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 2306, 2643
EcoT22I ATGCAT 4 cut(s) 664, 1506, 2428, 2558
ErhI CCWWGG 2 cut(s) 2306, 2643
FalI AAGNNNNNCTT 2 cut(s) 1268, 1300
FaqI GGGAC 2 cut(s) 2017, 2087
FauNDI CATATG 1 cut(s) 2428
FbaI TGATCA 2 cut(s) 366, 714
FblI GTMKAC 3 cut(s) 271, 1179, 2083
Fnu4HI GCNGC 1 cut(s) 775
FokI GGATG 6 cut(s) 152, 415, 546, 557, 928, 1772
Fsp4HI GCNGC 1 cut(s) 775
FspI TGCGCA 1 cut(s) 1949
GlaI GCGC 3 cut(s) 304, 1949, 2013
GluI GCNGC 1 cut(s) 775
HaeII RGCGCY 1 cut(s) 2015
HaeIII GGCC 8 cut(s) 5, 149, 206, 408, 1107, 1486, 2628, 2659
HapII CCGG 3 cut(s) 1782, 2231, 2545
HhaI GCGC 3 cut(s) 305, 1950, 2014
Hin6I GCGC 3 cut(s) 303, 1948, 2012
HinP1I GCGC 3 cut(s) 303, 1948, 2012
HincII GTYRAC 3 cut(s) 272, 802, 1533
HindII GTYRAC 3 cut(s) 272, 802, 1533
HindIII AAGCTT 3 cut(s) 126, 709, 2270
HpaI GTTAAC 1 cut(s) 802
HpaII CCGG 3 cut(s) 1782, 2231, 2545
HphI GGTGA 4 cut(s) 616, 2245, 2515, 2542
Hpy188I TCNGA 9 cut(s) 197, 433, 444, 762, 1059, 1887, 2068, 2403, 2667
Hpy99I CGWCG 1 cut(s) 1605
HpyCH4III ACNGT 5 cut(s) 401, 565, 673, 2244, 2564
HpyCH4IV ACGT 1 cut(s) 843
HpyF10VI GCNNNNNNNGC 4 cut(s) 309, 1434, 1945, 2041
HpyF3I CTNAG 8 cut(s) 116, 1038, 1062, 1149, 1247, 1902, 2706, 2732
HpySE526I ACGT 1 cut(s) 843
HspAI GCGC 3 cut(s) 303, 1948, 2012
Ksp22I TGATCA 2 cut(s) 366, 714
KspAI GTTAAC 1 cut(s) 802
Kzo9I GATC 6 cut(s) 366, 714, 1162, 1590, 2680, 2709
LmnI GCTCC 2 cut(s) 310, 419
LweI GCATC 7 cut(s) 130, 950, 1491, 1503, 1873, 2124, 2523
MaeII ACGT 1 cut(s) 843
MaeIII GTNAC 5 cut(s) 13, 792, 1384, 1440, 1911
MalI GATC 6 cut(s) 368, 716, 1164, 1592, 2682, 2711
MboI GATC 6 cut(s) 366, 714, 1162, 1590, 2680, 2709
MflI RGATCY 1 cut(s) 1590
MhlI GDGCHC 1 cut(s) 1832
MlyI GAGTC 7 cut(s) 476, 821, 918, 1738, 1862, 1919, 2095
MmeI TCCRAC 4 cut(s) 969, 1082, 2071, 2460
Mph1103I ATGCAT 4 cut(s) 664, 1506, 2428, 2558
MroXI GAANNNNTTC 4 cut(s) 128, 438, 1028, 2226
MslI CAYNNNNRTG 1 cut(s) 249
MspCI CTTAAG 1 cut(s) 2108
MspI CCGG 3 cut(s) 1782, 2231, 2545
MspR9I CCNGG 2 cut(s) 1782, 1982
Mva1269I GAATGC 2 cut(s) 769, 1028
MvaI CCWGG 1 cut(s) 1982
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 4 cut(s) 309, 1434, 1945, 2041
NciI CCSGG 1 cut(s) 1782
NcoI CCATGG 1 cut(s) 2643
NdeI CATATG 1 cut(s) 2428
NdeII GATC 6 cut(s) 366, 714, 1162, 1590, 2680, 2709
NlaIV GGNNCC 2 cut(s) 1979, 2586
NmuCI GTSAC 2 cut(s) 1384, 1911
NsbI TGCGCA 1 cut(s) 1949
NsiI ATGCAT 4 cut(s) 664, 1506, 2428, 2558
NspI RCATGY 2 cut(s) 250, 1441
NspV TTCGAA 2 cut(s) 706, 2266
PaqCI CACCTGC 1 cut(s) 65
PceI AGGCCT 1 cut(s) 1107
PciI ACATGT 1 cut(s) 246
PctI GAATGC 2 cut(s) 769, 1028
PdmI GAANNNNTTC 4 cut(s) 128, 438, 1028, 2226
PfeI GAWTC 5 cut(s) 192, 1660, 1898, 1942, 2063
PflMI CCANNNNNTGG 1 cut(s) 1090
PkrI GCNGC 1 cut(s) 776
PleI GAGTC 7 cut(s) 475, 820, 917, 1738, 1861, 1918, 2095
PpsI GAGTC 7 cut(s) 475, 820, 917, 1738, 1861, 1918, 2095
PpuMI RGGWCCY 1 cut(s) 1692
PscI ACATGT 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 1692
Psp6I CCWGG 1 cut(s) 1980
PspGI CCWGG 1 cut(s) 1980
PspN4I GGNNCC 2 cut(s) 1979, 2586
PspPI GGNCC 4 cut(s) 19, 1692, 2626, 2658
PspPPI RGGWCCY 1 cut(s) 1692
PstNI CAGNNNCTG 1 cut(s) 988
PsuI RGATCY 1 cut(s) 1590
RsaI GTAC 5 cut(s) 696, 915, 2549, 2694, 2768
RsaNI GTAC 5 cut(s) 695, 914, 2548, 2693, 2767
RseI CAYNNNNRTG 1 cut(s) 249
SalI GTCGAC 1 cut(s) 270
SatI GCNGC 1 cut(s) 775
Sau3AI GATC 6 cut(s) 366, 714, 1162, 1590, 2680, 2709
Sau96I GGNCC 4 cut(s) 19, 1692, 2626, 2658
SchI GAGTC 7 cut(s) 476, 821, 918, 1738, 1862, 1919, 2095
ScrFI CCNGG 2 cut(s) 1782, 1982
SduI GDGCHC 1 cut(s) 1832
SfaNI GCATC 7 cut(s) 130, 950, 1491, 1503, 1873, 2124, 2523
SfcI CTRYAG 1 cut(s) 2517
SfuI TTCGAA 2 cut(s) 706, 2266
SinI GGWCC 2 cut(s) 19, 1692
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 3 cut(s) 50, 1807, 2108
SmoI CTYRAG 3 cut(s) 50, 1807, 2108
SpeI ACTAGT 1 cut(s) 796
SseBI AGGCCT 1 cut(s) 1107
SsiI CCGC 7 cut(s) 143, 349, 464, 775, 1355, 2258, 2452
SspI AATATT 2 cut(s) 2023, 2621
StuI AGGCCT 1 cut(s) 1107
StyD4I CCNGG 2 cut(s) 1780, 1980
StyI CCWWGG 2 cut(s) 2306, 2643
TaaI ACNGT 5 cut(s) 401, 565, 673, 2244, 2564
TaiI ACGT 1 cut(s) 846
TaqI TCGA 8 cut(s) 271, 706, 907, 925, 1392, 1726, 2126, 2266
TatI WGTACW 2 cut(s) 2692, 2766
TauI GCSGC 1 cut(s) 777
TfiI GAWTC 5 cut(s) 192, 1660, 1898, 1942, 2063
TscAI CASTG 8 cut(s) 1286, 1690, 1722, 1978, 2249, 2325, 2397, 2595
TseFI GTSAC 2 cut(s) 1384, 1911
Tsp45I GTSAC 2 cut(s) 1384, 1911
TspGWI ACGGA 2 cut(s) 32, 1421
TspRI CASTG 8 cut(s) 1286, 1690, 1722, 1978, 2249, 2325, 2397, 2595
Van91I CCANNNNNTGG 1 cut(s) 1090
Vha464I CTTAAG 1 cut(s) 2108
VpaK11BI GGWCC 2 cut(s) 19, 1692
XapI RAATTY 5 cut(s) 233, 745, 1493, 1819, 2491
XbaI TCTAGA 2 cut(s) 835, 1747
XceI RCATGY 2 cut(s) 250, 1441
XcmI CCANNNNNNNNNTGG 2 cut(s) 315, 1474
XmiI GTMKAC 3 cut(s) 271, 1179, 2083
XmnI GAANNNNTTC 4 cut(s) 128, 438, 1028, 2226
Zsp2I ATGCAT 4 cut(s) 664, 1506, 2428, 2558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.