RchiOBHm_Chr2g0135381

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000110
Physical Location & Seq
Forward (+)
52428019 .. 52428750
732 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50629

Sequence Viewer

Length: 732 bp
ATGAATAAATTGCAAGTTTTGTCATGTGTTGTGGCAGAAGGAGACACTATTAGGTGGGTCGGTTGTATGACCCAACTTGTATGGATTGGAATTACTAATGTTAAAGAAAGTGATGAGATGCACCTGTGTGACAGCATTCAGAAGCTGCAGCTCCTTCACTACTTGTTTCTAATGGCAAGTGATGAAGAGGAGATTCTTCAAACAAATGCACTATGTTCATCTCCTCCCCTACTTCGAGTGGTTATTTTGGTTGGCCGATTGGAGAATGTACCACTTTGGTTTCATTCACTCTGCAGCCTCACACATCTGTATCTGCATTGGTCTAAACTTGAAGAAAATTTGGTACCTCACATTGAAGCACTGCCCAATCTGGGATATCTTACCTTTGTTAATGCATATGTTGGGAAACAGCTGTATTTTTGCAGAGACTTTTTAAAGCTAAAGAAGCTGGAATTGTATAATCTTCCCTTGTTGACAGAAATAACTATAGAAAATGGGGTAATGCCAAATCTCCATGACTTGCATGTTGAGAGCTGCATGTCATTAAAGACATTGCCACTGGGTCTTGAATTCCTTACTAATCTTCAAAAGTTGACATTAGAGACAGTTCCAAAAAAAATTATCCTGCCCATTCGGAAAGGAGCTGTGGATCGTCCAAAGGTTCAACACATCCCTGAAATCCTCTATTTCTATGAAGAGTCATCTATGAGGTTCTATGAAAGATTGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

243

Amino Acids

28.11

Weight (kDa)

5.99

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 1 - 201 1.2e-15 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 343
AclWI GGATC 1 cut(s) 657
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 2 cut(s) 337, 569
AfaI GTAC 2 cut(s) 270, 345
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 6 cut(s) 200, 332, 356, 569, 587, 665
AleI CACNNNNGTG 1 cut(s) 126
AluBI AGCT 7 cut(s) 145, 151, 412, 439, 448, 534, 644
AluI AGCT 7 cut(s) 145, 151, 412, 439, 448, 534, 644
Alw26I GTCTC 3 cut(s) 36, 420, 596
AlwI GGATC 1 cut(s) 657
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 4 cut(s) 145, 148, 294, 534
ApoI RAATTY 2 cut(s) 337, 569
Asp718I GGTACC 1 cut(s) 343
BaeI ACNNNNGTAYC 2 cut(s) 293, 326
BanI GGYRCC 1 cut(s) 343
BbvI GCAGC 4 cut(s) 132, 160, 306, 521
BcoDI GTCTC 3 cut(s) 36, 420, 596
BfaI CTAG 1 cut(s) 730
BfmI CTRYAG 3 cut(s) 146, 292, 486
BisI GCNGC 4 cut(s) 146, 149, 295, 535
BlsI GCNGC 4 cut(s) 147, 150, 296, 536
BmiI GGNNCC 1 cut(s) 345
BmrI ACTGGG 1 cut(s) 569
BmsI GCATC 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 569
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 564
Bse3DI GCAATG 1 cut(s) 551
BseGI GGATG 1 cut(s) 669
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 551
BseNI ACTGG 1 cut(s) 564
BseRI GAGGAG 2 cut(s) 203, 213
BseXI GCAGC 4 cut(s) 132, 160, 306, 521
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 3 cut(s) 36, 420, 596
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 649
BspANI GGCC 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 345
BspMAI CTGCAG 2 cut(s) 150, 296
BspPI GGATC 1 cut(s) 657
BspT107I GGYRCC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 551
BsrI ACTGG 1 cut(s) 564
BssMI GATC 1 cut(s) 649
Bst4CI ACNGT 1 cut(s) 607
Bst6I CTCTTC 2 cut(s) 180, 690
BstF5I GGATG 1 cut(s) 669
BstKTI GATC 1 cut(s) 652
BstMAI GTCTC 3 cut(s) 36, 420, 596
BstMBI GATC 1 cut(s) 649
BstMWI GCNNNNNNNGC 1 cut(s) 445
BstNSI RCATGY 2 cut(s) 527, 541
BstSFI CTRYAG 3 cut(s) 146, 292, 486
BstV1I GCAGC 4 cut(s) 132, 160, 306, 521
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 669
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 2 cut(s) 359, 557
CaiI CAGNNNCTG 1 cut(s) 145
Csp6I GTAC 2 cut(s) 269, 344
CviAII CATG 4 cut(s) 24, 515, 524, 538
CviJI RGCY 9 cut(s) 145, 151, 255, 297, 412, 439, 448, 534, 644
CviKI_1 RGCY 9 cut(s) 145, 151, 255, 297, 412, 439, 448, 534, 644
CviQI GTAC 2 cut(s) 269, 344
DpnI GATC 1 cut(s) 651
DpnII GATC 1 cut(s) 649
DraI TTTAAA 1 cut(s) 435
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 180, 690
EarI CTCTTC 2 cut(s) 180, 690
Eco32I GATATC 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 569
EcoRV GATATC 1 cut(s) 377
EcoT22I ATGCAT 1 cut(s) 397
FaeI CATG 4 cut(s) 27, 518, 527, 541
FatI CATG 4 cut(s) 23, 514, 523, 537
FauNDI CATATG 1 cut(s) 397
Fnu4HI GCNGC 4 cut(s) 146, 149, 295, 535
FokI GGATG 1 cut(s) 656
Fsp4HI GCNGC 4 cut(s) 146, 149, 295, 535
FspBI CTAG 1 cut(s) 730
GluI GCNGC 4 cut(s) 146, 149, 295, 535
HaeIII GGCC 1 cut(s) 255
Hin1II CATG 4 cut(s) 27, 518, 527, 541
HincII GTYRAC 2 cut(s) 474, 594
HindII GTYRAC 2 cut(s) 474, 594
HinfI GANTC 2 cut(s) 193, 698
Hpy166II GTNNAC 2 cut(s) 474, 594
Hpy188I TCNGA 2 cut(s) 141, 636
Hpy188III TCNNGA 1 cut(s) 566
Hpy8I GTNNAC 2 cut(s) 474, 594
HpyAV CCTTC 2 cut(s) 32, 164
HpyCH4III ACNGT 1 cut(s) 607
HpyF10VI GCNNNNNNNGC 1 cut(s) 445
Hsp92II CATG 4 cut(s) 27, 518, 527, 541
KpnI GGTACC 1 cut(s) 347
Kzo9I GATC 1 cut(s) 649
LmnI GCTCC 2 cut(s) 156, 641
LpnPI CCDG 6 cut(s) 137, 356, 434, 545, 638, 687
Lsp1109I GCAGC 4 cut(s) 132, 160, 306, 521
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 730
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 651
MboI GATC 1 cut(s) 649
MboII GAAGA 6 cut(s) 188, 197, 344, 455, 575, 707
MluCI AATT 6 cut(s) 8, 90, 337, 452, 569, 618
MlyI GAGTC 1 cut(s) 707
MnlI CCTC 6 cut(s) 181, 234, 308, 357, 692, 702
Mph1103I ATGCAT 1 cut(s) 397
MseI TTAA 4 cut(s) 102, 390, 434, 545
MslI CAYNNNNRTG 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 445
NdeI CATATG 1 cut(s) 397
NdeII GATC 1 cut(s) 649
NlaIII CATG 4 cut(s) 27, 518, 527, 541
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 2 cut(s) 527, 541
OliI CACNNNNGTG 1 cut(s) 126
PctI GAATGC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 4 cut(s) 147, 150, 296, 536
PleI GAGTC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 706
PspN4I GGNNCC 1 cut(s) 345
PstI CTGCAG 2 cut(s) 150, 296
PstNI CAGNNNCTG 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 412
RsaI GTAC 2 cut(s) 270, 345
RsaNI GTAC 2 cut(s) 269, 344
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 4 cut(s) 102, 390, 434, 545
SatI GCNGC 4 cut(s) 146, 149, 295, 535
Sau3AI GATC 1 cut(s) 649
SchI GAGTC 1 cut(s) 707
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 3 cut(s) 146, 292, 486
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 6 cut(s) 8, 90, 337, 452, 569, 618
SspMI CTAG 1 cut(s) 730
TaaI ACNGT 1 cut(s) 607
TaqI TCGA 1 cut(s) 235
TasI AATT 6 cut(s) 8, 90, 337, 452, 569, 618
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 4 cut(s) 102, 390, 434, 545
Tru9I TTAA 4 cut(s) 102, 390, 434, 545
TscAI CASTG 2 cut(s) 366, 564
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 4 cut(s) 145, 148, 294, 534
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 6 cut(s) 17, 198, 207, 272, 708, 732
TspRI CASTG 2 cut(s) 366, 564
XapI RAATTY 2 cut(s) 337, 569
XceI RCATGY 2 cut(s) 527, 541
XspI CTAG 1 cut(s) 730
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.