AT3G07040

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000110
Physical Location & Seq
Reverse (-)
2225855 .. 2229555
3701 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07040.1

Sequence Viewer

Length: 2781 bp
ATGGCTTCGGCTACTGTTGATTTTGGGATCGGACGGATTCTTAGTGTCCTGGAAAACGAGACCTTGTTATTGTCAGGAGTCCATGGTGAGATTGATAAAATGAAGAAGGAGTTGCTGATCATGAAGTCCTTTCTTGAGGATACTCATAAACATGGTGGAAATGGATCCACAACAACAACAACTCAACTCTTCCAAACTTTTGTGGCAAACACGAGAGATTTGGCTTACCAAATCGAAGACATTCTCGACGAGTTTGGCTATCACATCCACGGTTATCGTAGCTGCGCCAAAATTTGGCGTGCGTTTCATTTCCCGAGGTATATGTGGGCGAGGCACTCGATAGCTCAAAAGCTAGGAATGGTTAATGTCATGATTCAATCCATTTCTGATTCCATGAAAAGGTACTATCATTCAGAAAACTACCAAGCAGCATTATTACCGCCTATTGATGATGGCGATGCAAAGTGGGTGAACAACATCAGTGAGTCATCTCTTTTCTTTAGTGAAAATAGTCTTGTAGGGATTGATGCACCCAAGGGAAAGCTCATCGGACGGCTTCTAAGTCCCGAACCTCAGCGGATTGTTGTCGCGGTGGTTGGGATGGGCGGTTCAGGGAAAACTACACTCTCAGCGAATATCTTCAAGTCTCAAAGTGTGCGGAGGCATTTTGAGTCTTACGCTTGGGTTACAATCTCGAAATCTTATGTGATTGAAGATGTGTTTAGGACCATGATCAAGGAGTTTTACAAAGAAGCAGATACACAGATTCCAGCTGAATTATACTCCTTAGGCTACAGAGAGTTGGTGGAAAAACTTGTGGAGTATTTGCAGTCGAAGAGGTACATTGTTGTGCTTGATGATGTATGGACCACTGGTCTATGGAGGGAGATAAGTATTGCTTTACCAGATGGTATTTATGGAAGTCGTGTTATGATGACTACTCGGGACATGAACGTGGCTTCTTTCCCATATGGAATTGGGAGCACAAAGCACGAGATTGAGCTCTTAAAAGAAGACGAAGCTTGGGTGCTTTTCTCCAACAAAGCTTTTCCGGCAAGTCTTGAGCAATGCAGAACGCAGAATTTGGAGCCGATAGCACGAAAATTAGTCGAGAGATGTCAGGGTTTGCCATTAGCTATTGCTTCTTTGGGAAGCATGATGTCAACCAAGAAGTTTGAATCAGAATGGAAGAAAGTCTACAGTACTTTAAACTGGGAACTGAACAACAATCATGAACTCAAGATTGTTCGAAGCATTATGTTCCTTAGCTTCAATGATTTGCCATACCCGCTTAAACGTTGTTTCTTATATTGTTCTCTTTTCCCTGTGAACTATCGGATGAAAAGAAAGAGGCTCATTAGGATGTGGATGGCACAAAGGTTTGTGGAACCGATCAGAGGAGTGAAAGCAGAAGAAGTGGCTGATAGTTACCTCAATGAACTTGTTTACAGAAATATGCTTCAAGTTATCTTGTGGAATCCTTTTGGACGACCCAAGGCGTTCAAGATGCATGACGTGATATGGGAGATTGCTCTATCTGTATCCAAACTTGAGAGGTTCTGTGATGTATATAATGATGACAGTGATGGTGATGATGCTGCAGAAACAATGGAGAATTACGGTAGTCGCCATTTATGCATTCAGAAAGAGATGACACCTGATAGTATACGTGCAACAAACCTTCACTCTCTTTTGGTTTGCTCTTCTGCTAAACACAAGATGGAATTACTTCCAAGTCTGAACCTTCTGAGAGCCTTAGACCTTGAAGACTCTTCCATCAGCAAGTTACCAGATTGTTTAGTAACTATGTTCAACTTAAAGTACTTGAATTTGTCCAAGACACAGGTGAAAGAACTGCCAAAAAACTTCCATAAACTCGTCAATTTGGAGACGTTGAACACAAAGCACTCCAAGATTGAGGAACTTCCTCTAGGGATGTGGAAATTGAAGAAGTTGCGATATCTCATTACTTTTCGCCGCAATGAAGGACATGATTCCAATTGGAATTATGTTTTAGGTACAAGGGTTGTTCCTAAAATCTGGCAGTTGAAGGATTTGCAAGTCATGGACTGCTTCAACGCAGAAGATGAGCTTATCAAAAATCTCGGGTGTATGACTCAGCTCACAAGAATAAGTCTTGTCATGGTTAGGAGAGAACATGGAAGAGACTTGTGCGATTCACTGAATAAGATTAAAAGAATTCGATTCTTATCTTTAACGTCGATTGATGAAGAGGAACCGTTAGAGATAGATGACCTGATCGCAACTGCAAGCATTGAGAAGCTCTTTCTTGCTGGGAAACTGGAGAGAGTACCAAGTTGGTTCAACACTCTTCAAAACCTTACCTATTTGGGTTTGCGTGGATCTCAGCTACAGGAAAACGCCATTCTCTCTATCCAAACGCTTCCTAGATTGGTATGGCTTTCATTTTACAATGCATACATGGGACCTAGGTTGCGTTTTGCACAAGGATTTCAGAATCTGAAGATTCTAGAGATAGTTCAGATGAAACATCTGACAGAAGTTGTTATAGAAGACGGTGCAATGTTTGAGCTTCAGAAGCTTTATGTCAGGGCTTGTAGAGGGTTAGAGTACGTACCAAGAGGAATTGAGAATCTTATAAATCTTCAAGAACTGCATTTGATTCATGTTTCTAATCAGTTAGTAGAACGCATTCGCGGAGAAGGGAGTGTGGACCGGTCAAGGGTTAAACACATTCCTGCGATTAAGCATTATTTCAGAACTGATAATGGCTCTTTCTATGTGAGCCTCTCATCTTAG

Protein Analysis

926

Amino Acids

106.88

Weight (kDa)

8.58

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 93 7.6e-15 Rx N-terminal domain
NB-ARC PF00931 177 - 354 7.2e-57 NB-ARC domain
WHD_DRP PF23559 440 - 511 3.6e-19 Disease resistance protein Winged helix domain
LRR_14 PF23598 561 - 881 1.2e-38 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2621
AccB7I CCANNNNNTGG 1 cut(s) 294
AccI GTMKAC 2 cut(s) 1197, 1666
AccII CGCG 2 cut(s) 590, 2679
AciI CCGC 8 cut(s) 440, 577, 590, 606, 658, 1289, 1978, 2679
AclI AACGTT 1 cut(s) 1297
AclWI GGATC 4 cut(s) 35, 159, 172, 2371
AcsI RAATTY 4 cut(s) 291, 1081, 1828, 2199
AcuI CTGAAG 2 cut(s) 2504, 2540
AfaI GTAC 8 cut(s) 404, 842, 1204, 1823, 2020, 2313, 2594, 2598
AfiI CCNNNNNNNGG 4 cut(s) 294, 399, 1397, 2704
AgeI ACCGGT 1 cut(s) 2697
AhdI GACNNNNNGTC 1 cut(s) 873
AjiI CACGTC 1 cut(s) 1516
AjnI CCWGG 1 cut(s) 48
AloI GAACNNNNNNTCC 2 cut(s) 592, 624
Alw21I GWGCWC 2 cut(s) 986, 1005
Alw26I GTCTC 4 cut(s) 53, 651, 1883, 2160
AlwI GGATC 4 cut(s) 35, 159, 172, 2371
AlwNI CAGNNNCTG 1 cut(s) 2482
Ama87I CYCGRG 3 cut(s) 313, 942, 2105
ApeKI GCWGC 3 cut(s) 282, 428, 1598
ApoI RAATTY 4 cut(s) 291, 1081, 1828, 2199
AsiGI ACCGGT 1 cut(s) 2697
Asp700I GAANNNNTTC 4 cut(s) 240, 638, 1728, 2673
AspA2I CCTAGG 1 cut(s) 2450
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 4 cut(s) 726, 867, 2447, 2695
AsuHPI GGTGA 4 cut(s) 98, 481, 1601, 1858
AsuII TTCGAA 1 cut(s) 1249
AvaI CYCGRG 3 cut(s) 313, 942, 2105
AvaII GGWCC 4 cut(s) 726, 867, 2447, 2695
AvrII CCTAGG 1 cut(s) 2450
AxyI CCTNAGG 1 cut(s) 787
BaeI ACNNNNGTAYC 2 cut(s) 2010, 2043
BamHI GGATCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 1005
BarI GAAGNNNNNNTAC 2 cut(s) 1181, 1213
BauI CACGAG 2 cut(s) 211, 992
BbsI GAAGAC 4 cut(s) 243, 1020, 1773, 2541
Bbv12I GWGCWC 2 cut(s) 986, 1005
BbvCI CCTCAGC 1 cut(s) 573
BbvI GCAGC 3 cut(s) 269, 440, 1585
BccI CCATC 7 cut(s) 446, 595, 902, 1363, 1580, 1714, 1784
BceAI ACGGC 1 cut(s) 569
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 2 cut(s) 133, 1552
BclI TGATCA 2 cut(s) 117, 732
BcoDI GTCTC 4 cut(s) 53, 651, 1883, 2160
BfaI CTAG 5 cut(s) 353, 1931, 2409, 2451, 2492
BfmI CTRYAG 4 cut(s) 793, 1198, 1599, 2372
BfuI GTATCC 2 cut(s) 133, 1552
BisI GCNGC 4 cut(s) 283, 429, 1599, 1978
BlnI CCTAGG 1 cut(s) 2450
BlsI GCNGC 4 cut(s) 284, 430, 1600, 1979
BmcAI AGTACT 2 cut(s) 1204, 1823
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 4 cut(s) 726, 867, 2447, 2695
BmeRI GACNNNNNGTC 1 cut(s) 873
BmeT110I CYCGRG 3 cut(s) 313, 942, 2105
BmgBI CACGTC 1 cut(s) 1516
BmgT120I GGNCC 4 cut(s) 726, 867, 2447, 2695
BmiI GGNNCC 5 cut(s) 166, 1089, 1389, 2238, 2448
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 1222
BmsI GCATC 4 cut(s) 448, 517, 1497, 1585
BmuI ACTGGG 1 cut(s) 1222
BpiI GAAGAC 4 cut(s) 243, 1020, 1773, 2541
BpmI CTGGAG 1 cut(s) 2324
Bpu10I CCTNAGC 2 cut(s) 573, 1265
Bpu14I TTCGAA 1 cut(s) 1249
BpuEI CTTGAG 4 cut(s) 155, 1082, 1223, 1571
BsaAI YACGTR 2 cut(s) 1670, 2596
BsaBI GATNNNNATC 1 cut(s) 2209
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 6 cut(s) 82, 268, 314, 534, 1494, 2450
BsaWI WCCGGW 1 cut(s) 2697
Bsc4I CCNNNNNNNGG 4 cut(s) 294, 399, 1397, 2704
Bse118I RCCGGY 1 cut(s) 2697
Bse1I ACTGG 3 cut(s) 877, 1217, 2307
Bse21I CCTNAGG 1 cut(s) 787
Bse3DI GCAATG 3 cut(s) 1073, 1987, 2550
Bse8I GATNNNNATC 1 cut(s) 2209
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 6 cut(s) 82, 268, 314, 534, 1494, 2450
BseGI GGATG 6 cut(s) 264, 606, 1344, 1368, 1374, 1941
BseJI GATNNNNATC 1 cut(s) 2209
BseLI CCNNNNNNNGG 4 cut(s) 294, 399, 1397, 2704
BseMI GCAATG 3 cut(s) 1073, 1987, 2550
BseMII CTCAG 5 cut(s) 587, 642, 1739, 2132, 2381
BseNI ACTGG 3 cut(s) 877, 1217, 2307
BseRI GAGGAG 1 cut(s) 1413
BseXI GCAGC 3 cut(s) 269, 440, 1585
BseYI CCCAGC 1 cut(s) 2294
Bsh1236I CGCG 2 cut(s) 590, 2679
BshTI ACCGGT 1 cut(s) 2697
BsiHKAI GWGCWC 2 cut(s) 986, 1005
BsiHKCI CYCGRG 3 cut(s) 313, 942, 2105
BsiSI CCGG 2 cut(s) 1052, 2698
BslFI GGGAC 3 cut(s) 549, 959, 2460
BslI CCNNNNNNNGG 4 cut(s) 294, 399, 1397, 2704
BsmAI GTCTC 4 cut(s) 53, 651, 1883, 2160
BsmBI CGTCTC 1 cut(s) 1883
BsmFI GGGAC 3 cut(s) 549, 959, 2460
BsmI GAATGC 2 cut(s) 1638, 2673
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 3 cut(s) 313, 942, 2105
Bsp119I TTCGAA 1 cut(s) 1249
Bsp1286I GDGCHC 2 cut(s) 986, 1005
Bsp143I GATC 7 cut(s) 27, 117, 164, 732, 1392, 2259, 2363
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 8 cut(s) 440, 577, 590, 606, 658, 1289, 1978, 2679
BspCNI CTCAG 5 cut(s) 586, 641, 1740, 2131, 2380
BspFNI CGCG 2 cut(s) 590, 2679
BspHI TCATGA 3 cut(s) 120, 369, 1231
BspLI GGNNCC 5 cut(s) 166, 1089, 1389, 2238, 2448
BspMAI CTGCAG 1 cut(s) 1603
BspPI GGATC 4 cut(s) 35, 159, 172, 2371
BspQI GCTCTTC 1 cut(s) 1708
BspT104I TTCGAA 1 cut(s) 1249
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 3 cut(s) 1073, 1987, 2550
BsrFI RCCGGY 1 cut(s) 2697
BsrI ACTGG 3 cut(s) 877, 1217, 2307
BssAI RCCGGY 1 cut(s) 2697
BssECI CCNNGG 6 cut(s) 82, 268, 314, 534, 1494, 2450
BssMI GATC 7 cut(s) 27, 117, 164, 732, 1392, 2259, 2363
BssNAI GTATAC 1 cut(s) 1667
BssSI CACGAG 2 cut(s) 211, 992
BssT1I CCWWGG 4 cut(s) 82, 534, 1494, 2450
Bst1107I GTATAC 1 cut(s) 1667
Bst2BI CACGAG 2 cut(s) 211, 992
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 7 cut(s) 16, 272, 1202, 1583, 1622, 2241, 2540
Bst6I CTCTTC 7 cut(s) 194, 830, 1708, 1777, 2158, 2226, 2337
BstBAI YACGTR 2 cut(s) 1670, 2596
BstBI TTCGAA 1 cut(s) 1249
BstC8I GCNNGC 2 cut(s) 300, 2272
BstDSI CCRYGG 2 cut(s) 82, 268
BstF5I GGATG 6 cut(s) 264, 606, 1344, 1368, 1374, 1941
BstFNI CGCG 2 cut(s) 590, 2679
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 7 cut(s) 30, 120, 167, 735, 1395, 2262, 2366
BstMAI GTCTC 4 cut(s) 53, 651, 1883, 2160
BstMBI GATC 7 cut(s) 27, 117, 164, 732, 1392, 2259, 2363
BstMWI GCNNNNNNNGC 4 cut(s) 1052, 1288, 1635, 2560
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 4 cut(s) 793, 1198, 1599, 2372
BstSNI TACGTA 1 cut(s) 2596
BstUI CGCG 2 cut(s) 590, 2679
BstV1I GCAGC 3 cut(s) 269, 440, 1585
BstV2I GAAGAC 4 cut(s) 243, 1020, 1773, 2541
BstX2I RGATCY 2 cut(s) 164, 2363
BstYI RGATCY 2 cut(s) 164, 2363
BstZ17I GTATAC 1 cut(s) 1667
Bsu36I CCTNAGG 1 cut(s) 787
BsuI GTATCC 2 cut(s) 133, 1552
BtgI CCRYGG 2 cut(s) 82, 268
BtgZI GCGATG 1 cut(s) 471
BtrI CACGTC 1 cut(s) 1516
BtsCI GGATG 6 cut(s) 264, 606, 1344, 1368, 1374, 1941
BtsIMutI CAGTG 4 cut(s) 487, 870, 1588, 2180
Cac8I GCNNGC 2 cut(s) 300, 2272
CaiI CAGNNNCTG 1 cut(s) 2482
CciI TCATGA 3 cut(s) 120, 369, 1231
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 2697
Cfr13I GGNCC 4 cut(s) 726, 867, 2447, 2695
Csp6I GTAC 8 cut(s) 403, 841, 1203, 1822, 2019, 2312, 2593, 2597
CspAI ACCGGT 1 cut(s) 2697
CviQI GTAC 8 cut(s) 403, 841, 1203, 1822, 2019, 2312, 2593, 2597
DpnI GATC 7 cut(s) 29, 119, 166, 734, 1394, 2261, 2365
DpnII GATC 7 cut(s) 27, 117, 164, 732, 1392, 2259, 2363
DraI TTTAAA 1 cut(s) 1209
DriI GACNNNNNGTC 1 cut(s) 873
Eam1104I CTCTTC 7 cut(s) 194, 830, 1708, 1777, 2158, 2226, 2337
Eam1105I GACNNNNNGTC 1 cut(s) 873
EarI CTCTTC 7 cut(s) 194, 830, 1708, 1777, 2158, 2226, 2337
Ecl136II GAGCTC 1 cut(s) 1003
Eco105I TACGTA 1 cut(s) 2596
Eco130I CCWWGG 4 cut(s) 82, 534, 1494, 2450
Eco24I GRGCYC 1 cut(s) 1005
Eco31I GGTCTC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 1961
Eco47I GGWCC 4 cut(s) 726, 867, 2447, 2695
Eco53kI GAGCTC 1 cut(s) 1003
Eco57I CTGAAG 2 cut(s) 2504, 2540
Eco81I CCTNAGG 1 cut(s) 787
Eco88I CYCGRG 3 cut(s) 313, 942, 2105
EcoICRI GAGCTC 1 cut(s) 1003
EcoO109I RGGNCCY 1 cut(s) 2447
EcoRI GAATTC 1 cut(s) 2199
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 1961
EcoT14I CCWWGG 4 cut(s) 82, 534, 1494, 2450
EcoT22I ATGCAT 3 cut(s) 1512, 1640, 2440
EcoT38I GRGCYC 1 cut(s) 1005
ErhI CCWWGG 4 cut(s) 82, 534, 1494, 2450
Esp3I CGTCTC 1 cut(s) 1883
FalI AAGNNNNNCTT 4 cut(s) 883, 915, 2076, 2108
FaqI GGGAC 3 cut(s) 549, 959, 2460
FauI CCCGC 1 cut(s) 1296
FauNDI CATATG 1 cut(s) 970
FbaI TGATCA 2 cut(s) 117, 732
FblI GTMKAC 2 cut(s) 1197, 1666
Fnu4HI GCNGC 4 cut(s) 283, 429, 1599, 1978
FokI GGATG 6 cut(s) 251, 613, 1351, 1375, 1381, 1948
FriOI GRGCYC 1 cut(s) 1005
Fsp4HI GCNGC 4 cut(s) 283, 429, 1599, 1978
FspBI CTAG 5 cut(s) 353, 1931, 2409, 2451, 2492
GlaI GCGC 1 cut(s) 286
GluI GCNGC 4 cut(s) 283, 429, 1599, 1978
GsaI CCCAGC 1 cut(s) 2298
GsuI CTGGAG 1 cut(s) 2324
HapII CCGG 2 cut(s) 1052, 2698
HhaI GCGC 1 cut(s) 287
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HincII GTYRAC 1 cut(s) 1164
HindII GTYRAC 1 cut(s) 1164
HindIII AAGCTT 3 cut(s) 1020, 1044, 2561
HpaII CCGG 2 cut(s) 1052, 2698
HphI GGTGA 4 cut(s) 98, 481, 1601, 1858
Hpy166II GTNNAC 7 cut(s) 472, 1164, 1198, 1330, 1447, 1667, 2695
Hpy8I GTNNAC 7 cut(s) 472, 1164, 1198, 1330, 1447, 1667, 2695
Hpy99I CGWCG 2 cut(s) 251, 2224
HpyAV CCTTC 6 cut(s) 100, 1691, 1754, 1979, 2044, 2678
HpyCH4III ACNGT 7 cut(s) 16, 272, 1202, 1583, 1622, 2241, 2540
HpyCH4IV ACGT 7 cut(s) 954, 1297, 1515, 1669, 1892, 2219, 2595
HpyF10VI GCNNNNNNNGC 4 cut(s) 1052, 1288, 1635, 2560
HpySE526I ACGT 7 cut(s) 954, 1297, 1515, 1669, 1892, 2219, 2595
HspAI GCGC 1 cut(s) 285
Ksp22I TGATCA 2 cut(s) 117, 732
Kzo9I GATC 7 cut(s) 27, 117, 164, 732, 1392, 2259, 2363
LguI GCTCTTC 1 cut(s) 1708
LmnI GCTCC 2 cut(s) 981, 1087
Lsp1109I GCAGC 3 cut(s) 269, 440, 1585
LweI GCATC 4 cut(s) 448, 517, 1497, 1585
MaeI CTAG 5 cut(s) 353, 1931, 2409, 2451, 2492
MaeII ACGT 7 cut(s) 954, 1297, 1515, 1669, 1892, 2219, 2595
MaeIII GTNAC 4 cut(s) 685, 1427, 1785, 1801
MalI GATC 7 cut(s) 29, 119, 166, 734, 1394, 2261, 2365
MboI GATC 7 cut(s) 27, 117, 164, 732, 1392, 2259, 2363
MfeI CAATTG 1 cut(s) 1999
MflI RGATCY 2 cut(s) 164, 2363
MhlI GDGCHC 2 cut(s) 986, 1005
MlyI GAGTC 5 cut(s) 87, 494, 680, 1763, 2110
MmeI TCCRAC 1 cut(s) 1062
Mph1103I ATGCAT 3 cut(s) 1512, 1640, 2440
MroXI GAANNNNTTC 4 cut(s) 240, 638, 1728, 2673
MseI TTAA 9 cut(s) 363, 1007, 1208, 1293, 1817, 2193, 2216, 2709, 2727
MslI CAYNNNNRTG 4 cut(s) 150, 848, 953, 1361
MspA1I CMGCKG 2 cut(s) 577, 773
MspI CCGG 2 cut(s) 1052, 2698
MspR9I CCNGG 1 cut(s) 50
MunI CAATTG 1 cut(s) 1999
Mva1269I GAATGC 2 cut(s) 1638, 2673
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 2 cut(s) 590, 2679
MwoI GCNNNNNNNGC 4 cut(s) 1052, 1288, 1635, 2560
NcoI CCATGG 1 cut(s) 82
NdeI CATATG 1 cut(s) 970
NdeII GATC 7 cut(s) 27, 117, 164, 732, 1392, 2259, 2363
NlaIV GGNNCC 5 cut(s) 166, 1089, 1389, 2238, 2448
NsiI ATGCAT 3 cut(s) 1512, 1640, 2440
NspV TTCGAA 1 cut(s) 1249
PagI TCATGA 3 cut(s) 120, 369, 1231
PciSI GCTCTTC 1 cut(s) 1708
PctI GAATGC 2 cut(s) 1638, 2673
PdmI GAANNNNTTC 4 cut(s) 240, 638, 1728, 2673
PflMI CCANNNNNTGG 1 cut(s) 294
PfoI TCCNGGA 1 cut(s) 48
PinAI ACCGGT 1 cut(s) 2697
PkrI GCNGC 4 cut(s) 284, 430, 1600, 1979
PleI GAGTC 5 cut(s) 86, 493, 679, 1763, 2110
PpsI GAGTC 5 cut(s) 86, 493, 679, 1763, 2110
Ppu21I YACGTR 2 cut(s) 1670, 2596
PpuMI RGGWCCY 1 cut(s) 2447
PsiI TTATAA 1 cut(s) 2621
Psp124BI GAGCTC 1 cut(s) 1005
Psp1406I AACGTT 1 cut(s) 1297
Psp5II RGGWCCY 1 cut(s) 2447
Psp6I CCWGG 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 2294
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 5 cut(s) 166, 1089, 1389, 2238, 2448
PspPI GGNCC 4 cut(s) 726, 867, 2447, 2695
PspPPI RGGWCCY 1 cut(s) 2447
PstI CTGCAG 1 cut(s) 1603
PstNI CAGNNNCTG 1 cut(s) 2482
PsuI RGATCY 2 cut(s) 164, 2363
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 8 cut(s) 404, 842, 1204, 1823, 2020, 2313, 2594, 2598
RsaNI GTAC 8 cut(s) 403, 841, 1203, 1822, 2019, 2312, 2593, 2597
RseI CAYNNNNRTG 4 cut(s) 150, 848, 953, 1361
SacI GAGCTC 1 cut(s) 1005
SapI GCTCTTC 1 cut(s) 1708
SaqAI TTAA 9 cut(s) 363, 1007, 1208, 1293, 1817, 2193, 2216, 2709, 2727
SatI GCNGC 4 cut(s) 283, 429, 1599, 1978
Sau3AI GATC 7 cut(s) 27, 117, 164, 732, 1392, 2259, 2363
Sau96I GGNCC 4 cut(s) 726, 867, 2447, 2695
ScaI AGTACT 2 cut(s) 1204, 1823
SchI GAGTC 5 cut(s) 87, 494, 680, 1763, 2110
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 2 cut(s) 986, 1005
SfaNI GCATC 4 cut(s) 448, 517, 1497, 1585
SfcI CTRYAG 4 cut(s) 793, 1198, 1599, 2372
SfuI TTCGAA 1 cut(s) 1249
SinI GGWCC 4 cut(s) 726, 867, 2447, 2695
SmiMI CAYNNNNRTG 4 cut(s) 150, 848, 953, 1361
SmlI CTYRAG 4 cut(s) 134, 1061, 1238, 1550
SmoI CTYRAG 4 cut(s) 134, 1061, 1238, 1550
SnaBI TACGTA 1 cut(s) 2596
SsiI CCGC 8 cut(s) 440, 577, 590, 606, 658, 1289, 1978, 2679
SspMI CTAG 5 cut(s) 353, 1931, 2409, 2451, 2492
SstI GAGCTC 1 cut(s) 1005
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 4 cut(s) 82, 534, 1494, 2450
TaaI ACNGT 7 cut(s) 16, 272, 1202, 1583, 1622, 2241, 2540
TaiI ACGT 7 cut(s) 957, 1300, 1518, 1672, 1895, 2222, 2598
TaqI TCGA 9 cut(s) 234, 246, 338, 695, 833, 1110, 1249, 2203, 2222
TatI WGTACW 2 cut(s) 1202, 1821
TauI GCSGC 1 cut(s) 1980
Tru1I TTAA 9 cut(s) 363, 1007, 1208, 1293, 1817, 2193, 2216, 2709, 2727
Tru9I TTAA 9 cut(s) 363, 1007, 1208, 1293, 1817, 2193, 2216, 2709, 2727
TscAI CASTG 4 cut(s) 487, 877, 1588, 2187
TseI GCWGC 3 cut(s) 282, 428, 1598
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 4 cut(s) 487, 877, 1588, 2187
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 4 cut(s) 726, 867, 2447, 2695
XapI RAATTY 4 cut(s) 291, 1081, 1828, 2199
XbaI TCTAGA 1 cut(s) 2491
XmaJI CCTAGG 1 cut(s) 2450
XmiI GTMKAC 2 cut(s) 1197, 1666
XmnI GAANNNNTTC 4 cut(s) 240, 638, 1728, 2673
XspI CTAG 5 cut(s) 353, 1931, 2409, 2451, 2492
ZrmI AGTACT 2 cut(s) 1204, 1823
Zsp2I ATGCAT 3 cut(s) 1512, 1640, 2440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.