Prupe.6G200600_v2.0.a1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000110
Physical Location & Seq
Forward (+)
20827842 .. 20831412
3571 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G200600.1

Sequence Viewer

Length: 1137 bp
ATGCTTACAACTCGAAGAGAAGACATAGAATCCTTTTCTTTTGGAGTTCAAAGCCATGTTCACAAGATTCAACCGTTGGAAGGGGGTGATGCATGGGAGCTTTTCAGCATGAAAGCATTCTCAAGTGATCTGAAAAAATCTTGTTCACCTGAACTTCTGCCTTCAGCTCGGGAACTTGTGGAAAAGTGTGAAGGCCTACCACTCGCGATCGTAGCCTTAAGTGGTCTCATGTCTTCTAAGAAGTCACTTAAAGAGTGGAGCATAGTCTACAACAGCTTAAATTGGCATCTAACAAACAATTCTTTGTTACAACCTATGAAGATGCACATCTTGTTGTTTAGTTTTAATGATTTTCCATACCGATTGAGGCAATGCTTTCTGTATTGTTCCCTTTTTCCAGAAGGTCATGTGATCATAATGTCAAACAAAGTAGGAGCAAACCCTAAAAAATTAGGGCACATAGCAGAACATAGAAACCCTGTGAGCACGGCAATAGGTAAGGCAAAACACAGAAACCTTGTAAGCACAGCAATAGATAAGGCAGAACACATAAACCCTGTGAGCACGACAGTAGATAAGGCAGAATACAGAAATTCTGTGAGCACGGCAATAGGTAAGGCAGAACACAGAAACCCTATGAGCACGGTAGCAGATAAGGCAGAACACAGAAACCCTGGGTTAATTTCCAGAAAGGCAATTGGGGTAAGAATACCATCAAGTATTAGTAAGATGAAGAAATTGCAAACTTTGGCATATATTGAATCAGAAGGAAACATTATTAGACTTATTGGAAATATGACCCAGCTTACGTTTCTTGGCATTTTAAATGTGAAAGAAATAGACGAGGAGAACCTATGTCCTTTCCCGCTTTCTCTCACAAATTTGAATCTGCACGAGTCCAGACTTGAAGAAGATTTACTAAGTCATATTGAAGCATTGCCCTCTCTACATTCTCTTTGCCTCGATAATGCCTCGGTTAGGAAAGAGTTATGTTTCAACAGAGGCTTTGTGAAGCTTCGGCATTTGTGGTTTTGGGATCTCGCATTATTAAATAAGATAACTATAGAAAAAGGGGCGATGCCAAATCTCGAGTTCTTAGGCATTCGTAGTTGCTTGACATTAGAAACATTGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

379

Amino Acids

42.52

Weight (kDa)

8.8

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 866
AclWI GGATC 1 cut(s) 1044
AcsI RAATTY 2 cut(s) 592, 880
AcuI CTGAAG 1 cut(s) 147
AfiI CCNNNNNNNGG 2 cut(s) 80, 978
AflII CTTAAG 1 cut(s) 217
AgsI TTSAA 7 cut(s) 50, 71, 761, 886, 908, 932, 997
AjnI CCWGG 1 cut(s) 673
AluBI AGCT 5 cut(s) 100, 167, 276, 805, 1015
AluI AGCT 5 cut(s) 100, 167, 276, 805, 1015
Alw21I GWGCWC 4 cut(s) 488, 566, 605, 644
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 1044
Ama87I CYCGRG 2 cut(s) 168, 1088
AoxI GGCC 1 cut(s) 193
ApoI RAATTY 2 cut(s) 592, 880
Asp700I GAANNNNTTC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 98, 138
AvaI CYCGRG 2 cut(s) 168, 1088
BaeGI GKGCMC 1 cut(s) 459
BarI GAAGNNNNNNTAC 2 cut(s) 900, 932
BauI CACGAG 1 cut(s) 893
BbsI GAAGAC 2 cut(s) 27, 225
Bbv12I GWGCWC 4 cut(s) 488, 566, 605, 644
BccI CCATC 1 cut(s) 721
BceAI ACGGC 2 cut(s) 504, 621
BciT130I CCWGG 1 cut(s) 675
BclI TGATCA 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 1062
BfrI CTTAAG 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 675
BmeT110I CYCGRG 2 cut(s) 168, 1088
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 4 cut(s) 79, 295, 312, 1068
BpiI GAAGAC 2 cut(s) 27, 225
BpuEI CTTGAG 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 673, 674, 972
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 978
Bse3DI GCAATG 3 cut(s) 377, 935, 1127
Bse8I GATNNNNATC 1 cut(s) 326
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 3 cut(s) 673, 674, 972
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 2 cut(s) 80, 978
BseMI GCAATG 3 cut(s) 377, 935, 1127
BseRI GAGGAG 1 cut(s) 860
BseSI GKGCMC 1 cut(s) 459
BseYI CCCAGC 1 cut(s) 801
BsgI GTGCAG 1 cut(s) 875
Bsh1236I CGCG 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 4 cut(s) 488, 566, 605, 644
BsiHKCI CYCGRG 2 cut(s) 168, 1088
BslI CCNNNNNNNGG 2 cut(s) 80, 978
BsmAI GTCTC 1 cut(s) 230
BsmI GAATGC 2 cut(s) 116, 1101
BsnI GGCC 1 cut(s) 195
Bso31I GGTCTC 1 cut(s) 230
BsoBI CYCGRG 2 cut(s) 168, 1088
Bsp1286I GDGCHC 5 cut(s) 459, 488, 566, 605, 644
Bsp143I GATC 4 cut(s) 127, 207, 411, 1036
Bsp68I TCGCGA 1 cut(s) 206
BspACI CCGC 1 cut(s) 866
BspANI GGCC 1 cut(s) 195
BspFNI CGCG 1 cut(s) 206
BspPI GGATC 1 cut(s) 1044
BspTI CTTAAG 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 230
BsrDI GCAATG 3 cut(s) 377, 935, 1127
BssECI CCNNGG 3 cut(s) 673, 674, 972
BssMI GATC 4 cut(s) 127, 207, 411, 1036
BssSI CACGAG 1 cut(s) 893
Bst2BI CACGAG 1 cut(s) 893
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 3 cut(s) 75, 571, 646
Bst6I CTCTTC 1 cut(s) 10
BstAFI CTTAAG 1 cut(s) 217
BstDEI CTNAG 3 cut(s) 237, 920, 1096
BstENI CCTNNNNNAGG 1 cut(s) 976
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 4 cut(s) 130, 210, 414, 1039
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 4 cut(s) 127, 207, 411, 1036
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 2 cut(s) 212, 656
BstNI CCWGG 1 cut(s) 675
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 1 cut(s) 1062
BstSLI GKGCMC 1 cut(s) 459
BstUI CGCG 1 cut(s) 206
BstV2I GAAGAC 2 cut(s) 27, 225
BstX2I RGATCY 1 cut(s) 1036
BstYI RGATCY 1 cut(s) 1036
BsuRI GGCC 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 1091
BtuMI TCGCGA 1 cut(s) 206
CviAII CATG 5 cut(s) 56, 93, 109, 229, 407
CviJI RGCY 9 cut(s) 54, 100, 167, 195, 215, 276, 805, 1005, 1015
CviKI_1 RGCY 9 cut(s) 54, 100, 167, 195, 215, 276, 805, 1005, 1015
DdeI CTNAG 3 cut(s) 237, 920, 1096
DpnI GATC 4 cut(s) 129, 209, 413, 1038
DpnII GATC 4 cut(s) 127, 207, 411, 1036
DraI TTTAAA 1 cut(s) 825
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
Eco147I AGGCCT 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 2 cut(s) 168, 1088
EcoNI CCTNNNNNAGG 1 cut(s) 976
EcoRII CCWGG 1 cut(s) 673
EcoT22I ATGCAT 1 cut(s) 94
FaeI CATG 5 cut(s) 59, 96, 112, 232, 410
FatI CATG 5 cut(s) 55, 92, 108, 228, 406
FauI CCCGC 1 cut(s) 873
FbaI TGATCA 1 cut(s) 411
FblI GTMKAC 1 cut(s) 267
GsaI CCCAGC 1 cut(s) 805
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 5 cut(s) 59, 96, 112, 232, 410
HindIII AAGCTT 1 cut(s) 1013
HinfI GANTC 5 cut(s) 29, 67, 761, 886, 896
HphI GGTGA 2 cut(s) 98, 138
Hpy166II GTNNAC 3 cut(s) 61, 146, 268
Hpy188I TCNGA 2 cut(s) 132, 766
Hpy188III TCNNGA 6 cut(s) 170, 205, 398, 687, 900, 1088
Hpy8I GTNNAC 3 cut(s) 61, 146, 268
HpyAV CCTTC 5 cut(s) 74, 171, 185, 395, 761
HpyCH4III ACNGT 3 cut(s) 75, 571, 646
HpyCH4IV ACGT 1 cut(s) 809
HpyCH4V TGCA 4 cut(s) 92, 325, 742, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 656
HpyF3I CTNAG 3 cut(s) 237, 920, 1096
HpySE526I ACGT 1 cut(s) 809
Hsp92II CATG 5 cut(s) 59, 96, 112, 232, 410
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 4 cut(s) 127, 207, 411, 1036
LmnI GCTCC 3 cut(s) 97, 258, 434
LpnPI CCDG 9 cut(s) 162, 411, 492, 570, 660, 687, 700, 815, 913
LweI GCATC 4 cut(s) 79, 295, 312, 1068
MaeII ACGT 1 cut(s) 809
MaeIII GTNAC 2 cut(s) 243, 306
MalI GATC 4 cut(s) 129, 209, 413, 1038
MboI GATC 4 cut(s) 127, 207, 411, 1036
MboII GAAGA 7 cut(s) 27, 32, 225, 331, 745, 920, 923
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 1 cut(s) 1036
MhlI GDGCHC 5 cut(s) 459, 488, 566, 605, 644
MluCI AATT 8 cut(s) 280, 298, 449, 592, 681, 696, 737, 880
MlyI GAGTC 1 cut(s) 905
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 6 cut(s) 360, 838, 952, 971, 982, 995
Mph1103I ATGCAT 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 7 cut(s) 218, 249, 278, 345, 680, 824, 1049
MspCI CTTAAG 1 cut(s) 217
MspR9I CCNGG 1 cut(s) 675
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 2 cut(s) 116, 1101
MvaI CCWGG 1 cut(s) 675
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 212, 656
NdeII GATC 4 cut(s) 127, 207, 411, 1036
NlaIII CATG 5 cut(s) 59, 96, 112, 232, 410
NmuCI GTSAC 1 cut(s) 243
NruI TCGCGA 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 94
PaeR7I CTCGAG 1 cut(s) 1088
PasI CCCWGGG 1 cut(s) 674
PceI AGGCCT 1 cut(s) 195
PctI GAATGC 2 cut(s) 116, 1101
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 4 cut(s) 29, 67, 761, 886
Ple19I CGATCG 1 cut(s) 210
PleI GAGTC 1 cut(s) 904
PpsI GAGTC 1 cut(s) 904
Psp6I CCWGG 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 801
PspGI CCWGG 1 cut(s) 673
PsuI RGATCY 1 cut(s) 1036
PvuI CGATCG 1 cut(s) 210
RruI TCGCGA 1 cut(s) 206
SaqAI TTAA 7 cut(s) 218, 249, 278, 345, 680, 824, 1049
Sau3AI GATC 4 cut(s) 127, 207, 411, 1036
SchI GAGTC 1 cut(s) 905
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 5 cut(s) 459, 488, 566, 605, 644
SfaNI GCATC 4 cut(s) 79, 295, 312, 1068
SfcI CTRYAG 1 cut(s) 1062
Sfr274I CTCGAG 1 cut(s) 1088
SlaI CTCGAG 1 cut(s) 1088
SmlI CTYRAG 3 cut(s) 121, 217, 1088
SmoI CTYRAG 3 cut(s) 121, 217, 1088
Sse9I AATT 8 cut(s) 280, 298, 449, 592, 681, 696, 737, 880
SseBI AGGCCT 1 cut(s) 195
SsiI CCGC 1 cut(s) 866
StuI AGGCCT 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 673
TaaI ACNGT 3 cut(s) 75, 571, 646
TaiI ACGT 1 cut(s) 812
TaqI TCGA 3 cut(s) 13, 963, 1089
TasI AATT 8 cut(s) 280, 298, 449, 592, 681, 696, 737, 880
TfiI GAWTC 4 cut(s) 29, 67, 761, 886
Tru1I TTAA 7 cut(s) 218, 249, 278, 345, 680, 824, 1049
Tru9I TTAA 7 cut(s) 218, 249, 278, 345, 680, 824, 1049
TseFI GTSAC 1 cut(s) 243
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 3 cut(s) 125, 332, 746
Vha464I CTTAAG 1 cut(s) 217
XagI CCTNNNNNAGG 1 cut(s) 976
XapI RAATTY 2 cut(s) 592, 880
XhoI CTCGAG 1 cut(s) 1088
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.