Rh2CG153800

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000110
Physical Location & Seq
Reverse (-)
13378846 .. 13379684
839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG153800.1

Sequence Viewer

Length: 768 bp
ATGGCCTCAGCTCCAACAGACCTCTTGATTGGCAAAATTGTGAGCATTCTAGAGAGCGAAGCATCCTCCATAGCCGGTGTTCGTGATGAAGTTGATGAGATTAAGCTGGAGCTTGAGAGCATGAAGTCTTTCCTAGAGGATACAGAGCGGAAGAAAGCAAGTACACAAGGAGAGAAAACGTGGATTGCAAACGTGAGAAACTTGGCCTGCGATGTTGAAGATATCATTGATGAATTCATGTATCGCATGTATGAGAAAGAAAGTGGCGGTCGATTTGCAAGGTTTCTCCAGAAAACCATTCATGTCCCAAAAAACCTCTGGTATAAGCGTCGAATTGCTAACAAGTTACAGAAAATTATTGCAGCAATCAAAGCCATTCCAGAGAGAAAACAGAGGTATGGTCTAATTGGTCAAGAAGGAACATCTTCTGATGATGTTCACAAGAGGGTAAAAACCAAAGCCGAGTCCTCGCTTTTTGAGAAGGAAGATGAACTCGTGGGAATTGAAGGGAAGAAGCAAATGTTAATGGGATGGTTGATCAATGGAGAGAAAAAACAAACTATTGTCTCTGTGGTCGGCATGGGAGGATCAGGGAAGACAACTCTCGTTGCCAACACCTTCACTCAGGAGACAAAGCTTGATAAAGGAATTCCACCAATCAATAAAACAGGAAGTCCCTGGGAATTTGCATGCAATGAGCTACAGGGAATTGCTGGACATGTTGACAAACTTTTTGGTGTCCAAAAGATATCTAGTTGTATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

255

Amino Acids

28.41

Weight (kDa)

8.59

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 90 3e-23 Rx N-terminal domain
NB-ARC PF00931 170 - 212 7.4e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 148
AciI CCGC 2 cut(s) 148, 267
AclWI GGATC 1 cut(s) 595
AcsI RAATTY 3 cut(s) 233, 648, 683
AfaI GTAC 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 2 cut(s) 218, 506
AjnI CCWGG 1 cut(s) 677
AluBI AGCT 5 cut(s) 11, 106, 112, 637, 700
AluI AGCT 5 cut(s) 11, 106, 112, 637, 700
Alw26I GTCTC 2 cut(s) 571, 623
AlwI GGATC 1 cut(s) 595
AoxI GGCC 2 cut(s) 3, 204
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 3 cut(s) 233, 648, 683
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
Asp700I GAANNNNTTC 2 cut(s) 128, 424
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 602
BbvCI CCTCAGC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 374
BccI CCATC 1 cut(s) 525
BciT130I CCWGG 1 cut(s) 679
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 537
BcoDI GTCTC 2 cut(s) 571, 623
BfaI CTAG 3 cut(s) 50, 134, 753
BfmI CTRYAG 1 cut(s) 701
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 679
BmrFI CCNGG 1 cut(s) 679
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 602
BpmI CTGGAG 2 cut(s) 128, 272
Bpu10I CCTNAGC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 677, 678
Bse118I RCCGGY 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 700
BseBI CCWGG 1 cut(s) 679
BseDI CCNNGG 2 cut(s) 677, 678
BseGI GGATG 2 cut(s) 62, 536
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 2 cut(s) 21, 638
BseXI GCAGC 1 cut(s) 374
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 5, 206
BsiEI CGRYCG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 2 cut(s) 290, 660
BsmAI GTCTC 2 cut(s) 571, 623
BsmFI GGGAC 2 cut(s) 290, 660
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 2 cut(s) 5, 206
Bsp143I GATC 2 cut(s) 537, 587
BspACI CCGC 2 cut(s) 148, 267
BspANI GGCC 2 cut(s) 5, 206
BspCNI CTCAG 2 cut(s) 20, 637
BspPI GGATC 1 cut(s) 595
BsrBI CCGCTC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 677, 678
BssMI GATC 2 cut(s) 537, 587
BssSI CACGAG 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 679
BstC8I GCNNGC 2 cut(s) 208, 691
BstDEI CTNAG 2 cut(s) 7, 624
BstF5I GGATG 2 cut(s) 62, 536
BstKTI GATC 2 cut(s) 540, 590
BstMAI GTCTC 2 cut(s) 571, 623
BstMBI GATC 2 cut(s) 537, 587
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 679
BstNSI RCATGY 3 cut(s) 250, 693, 722
BstSCI CCNGG 1 cut(s) 677
BstSFI CTRYAG 1 cut(s) 701
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 602
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 5, 206
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 2 cut(s) 62, 536
Cac8I GCNNGC 2 cut(s) 208, 691
Cfr10I RCCGGY 1 cut(s) 74
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 162
CviAII CATG 7 cut(s) 121, 238, 247, 302, 580, 690, 719
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 2 cut(s) 7, 624
DpnI GATC 2 cut(s) 539, 589
DpnII GATC 2 cut(s) 537, 587
Eco32I GATATC 2 cut(s) 223, 750
EcoRI GAATTC 2 cut(s) 233, 648
EcoRII CCWGG 1 cut(s) 677
EcoRV GATATC 2 cut(s) 223, 750
FaeI CATG 7 cut(s) 124, 241, 250, 305, 583, 693, 722
FaqI GGGAC 2 cut(s) 290, 660
FatI CATG 7 cut(s) 120, 237, 246, 301, 579, 689, 718
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 2 cut(s) 49, 543
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 3 cut(s) 50, 134, 753
GluI GCNGC 1 cut(s) 363
GsuI CTGGAG 2 cut(s) 128, 272
HaeIII GGCC 2 cut(s) 5, 206
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 317
Hin1II CATG 7 cut(s) 124, 241, 250, 305, 583, 693, 722
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 1 cut(s) 464
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 3 cut(s) 164, 439, 724
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 7 cut(s) 25, 50, 83, 289, 380, 413, 626
Hpy8I GTNNAC 3 cut(s) 164, 439, 724
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 4 cut(s) 410, 475, 500, 628
HpyCH4IV ACGT 2 cut(s) 179, 192
HpyCH4V TGCA 5 cut(s) 188, 278, 362, 689, 693
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 2 cut(s) 7, 624
HpySE526I ACGT 2 cut(s) 179, 192
Hsp92II CATG 7 cut(s) 124, 241, 250, 305, 583, 693, 722
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 2 cut(s) 537, 587
LmnI GCTCC 2 cut(s) 16, 109
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 71
MaeI CTAG 3 cut(s) 50, 134, 753
MaeII ACGT 2 cut(s) 179, 192
MaeIII GTNAC 1 cut(s) 345
MalI GATC 2 cut(s) 539, 589
MbiI CCGCTC 1 cut(s) 148
MboI GATC 2 cut(s) 537, 587
MboII GAAGA 6 cut(s) 163, 230, 417, 497, 523, 607
MluCI AATT 9 cut(s) 36, 233, 333, 354, 405, 501, 648, 683, 708
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 9 cut(s) 16, 32, 76, 130, 326, 387, 438, 478, 578
MroXI GAANNNNTTC 2 cut(s) 128, 424
MseI TTAA 2 cut(s) 102, 524
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 679
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 1 cut(s) 679
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 2 cut(s) 537, 587
NlaIII CATG 7 cut(s) 124, 241, 250, 305, 583, 693, 722
NmeAIII GCCGAG 1 cut(s) 487
NspI RCATGY 3 cut(s) 250, 693, 722
PaeI GCATGC 1 cut(s) 693
PasI CCCWGGG 1 cut(s) 678
PciI ACATGT 1 cut(s) 718
PctI GAATGC 1 cut(s) 45
PdmI GAANNNNTTC 2 cut(s) 128, 424
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PscI ACATGT 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 677
PspGI CCWGG 1 cut(s) 677
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 102, 524
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 2 cut(s) 537, 587
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 1 cut(s) 679
SfaNI GCATC 1 cut(s) 71
SfcI CTRYAG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SphI GCATGC 1 cut(s) 693
Sse9I AATT 9 cut(s) 36, 233, 333, 354, 405, 501, 648, 683, 708
SsiI CCGC 2 cut(s) 148, 267
SspMI CTAG 3 cut(s) 50, 134, 753
StyD4I CCNGG 1 cut(s) 677
TaiI ACGT 2 cut(s) 182, 195
TaqI TCGA 2 cut(s) 271, 331
TasI AATT 9 cut(s) 36, 233, 333, 354, 405, 501, 648, 683, 708
TatI WGTACW 1 cut(s) 161
Tru1I TTAA 2 cut(s) 102, 524
Tru9I TTAA 2 cut(s) 102, 524
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 6 cut(s) 102, 137, 226, 246, 290, 504
XapI RAATTY 3 cut(s) 233, 648, 683
XbaI TCTAGA 1 cut(s) 49
XceI RCATGY 3 cut(s) 250, 693, 722
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmnI GAANNNNTTC 2 cut(s) 128, 424
XspI CTAG 3 cut(s) 50, 134, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.