Rorug05G0043900

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000110
Physical Location & Seq
Reverse (-)
3879396 .. 3880569
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0043900.1

Sequence Viewer

Length: 849 bp
ATGGAACAAACTGCGAGTCATGTATGGGATTTGAGTTCTGTTTCGGATTTGGTTTTCGCTGAAACAATGAAGTACTTTTGGGCTTCGATTTCCTCAAGTCCTCTGTTTTCAAGCATTGTCACTCTCTACTCTCTGATCCTCCTTTACTTCCCGTACCATTTTTTAAGCATTGTTTTCTCGCCGGTGCTGATCATAACCGGAATAATCTTGATCAGCCTTCTCCGACTCGGTGCAAGTCAGAGTTTTGAAGACGATGATCTCAAAGAAAAGGAAAAACCTTCTGATTCCATACTCGAAACAGAGCACTCTGAAACCAATGATAGTCTTGAAGTCGTTCATGAACAAATTGCAAGTGTTGTACAAGAAGAAGATCACAGCTTTGTCACGTATCGATTCGAAACAGACGAAAGCGAGATGGGTTTCAATCAGTACCCCTGTTTCGATGATTACTTTGTTGAGTGGAATGTGAAGGCGCCATTAGAGGTCATCTATGAAGAATATGAAGGTGAAGAAGATGAGAAGGATAATCGTGAAGAACATGAAAACCAAGTTTTGGGTCTTGGAAGGCAGCCTTCGTTGTCTCTATATTACCCGGAGTCGGATTCGGATACATCATCGGAAGGTGACTTTTCGGTGACCGGAGCGTGGGACTCGCCGGAAAACATGTGCTACAAGTGGGAAGAGGATGACCGAGAAGGGTTGATTGAGATTGCTTTGGATGGCAATAAGAGTTCAGGCTTAGAATTTCAAGTTGAGGAAGAGAATTTGATAGAGATTGATATATCTCCGACGCGCAATGACTTTGGCGGCGAGAAGTGGATGTTTTCCGGTGAGGTTAGATTCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

282

Amino Acids

32.4

Weight (kDa)

4.05

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AccB7I CCANNNNNTGG 1 cut(s) 553
AccII CGCG 1 cut(s) 793
AciI CCGC 1 cut(s) 807
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 2 cut(s) 743, 763
AcyI GRCGYC 1 cut(s) 473
AfaI GTAC 4 cut(s) 74, 155, 360, 431
AfiI CCNNNNNNNGG 3 cut(s) 553, 598, 645
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 5 cut(s) 111, 248, 329, 424, 749
AluBI AGCT 2 cut(s) 378, 846
AluI AGCT 2 cut(s) 378, 846
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 585
AlwI GGATC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 2 cut(s) 743, 763
ArsI GACNNNNNNTTYG 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 333
AspLEI GCGC 2 cut(s) 475, 795
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 4 cut(s) 518, 635, 646, 842
AsuII TTCGAA 1 cut(s) 396
BanI GGYRCC 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 580
BccI CCATC 2 cut(s) 409, 713
BciVI GTATCC 1 cut(s) 601
BclI TGATCA 2 cut(s) 189, 210
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 476
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 2 cut(s) 569, 808
BlsI GCNGC 2 cut(s) 570, 809
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 593
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 593
Bsa29I ATCGAT 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 473
BsaWI WCCGGW 3 cut(s) 197, 638, 827
Bsc4I CCNNNNNNNGG 3 cut(s) 553, 598, 645
Bse118I RCCGGY 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 802
BseCI ATCGAT 1 cut(s) 391
BseGI GGATG 3 cut(s) 691, 724, 825
BseLI CCNNNNNNNGG 3 cut(s) 553, 598, 645
BseMI GCAATG 1 cut(s) 802
BseXI GCAGC 1 cut(s) 580
Bsh1236I CGCG 1 cut(s) 793
BshNI GGYRCC 1 cut(s) 472
BshVI ATCGAT 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 6 cut(s) 182, 198, 593, 639, 656, 828
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 3 cut(s) 553, 598, 645
BsmAI GTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 662
Bsp119I TTCGAA 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 306
Bsp1407I TGTACA 1 cut(s) 358
Bsp143I GATC 5 cut(s) 135, 189, 210, 256, 370
BspACI CCGC 1 cut(s) 807
BspDI ATCGAT 1 cut(s) 391
BspFNI CGCG 1 cut(s) 793
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 474
BspPI GGATC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 802
BsrFI RCCGGY 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 181
BssMI GATC 5 cut(s) 135, 189, 210, 256, 370
BssNI GRCGYC 1 cut(s) 473
Bst6I CTCTTC 2 cut(s) 675, 753
BstACI GRCGYC 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 358
BstBAI YACGTR 1 cut(s) 387
BstBI TTCGAA 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 739
BstEII GGTNACC 1 cut(s) 634
BstF5I GGATG 3 cut(s) 691, 724, 825
BstFNI CGCG 1 cut(s) 793
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 2 cut(s) 475, 795
BstKTI GATC 5 cut(s) 138, 192, 213, 259, 373
BstMAI GTCTC 1 cut(s) 585
BstMBI GATC 5 cut(s) 135, 189, 210, 256, 370
BstNSI RCATGY 1 cut(s) 667
BstPI GGTNACC 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 591
BstUI CGCG 1 cut(s) 793
BstV1I GCAGC 1 cut(s) 580
BstV2I GAAGAC 1 cut(s) 255
Bsu15I ATCGAT 1 cut(s) 391
BsuI GTATCC 1 cut(s) 601
BsuTUI ATCGAT 1 cut(s) 391
BtsCI GGATG 3 cut(s) 691, 724, 825
CciI TCATGA 1 cut(s) 337
CfoI GCGC 2 cut(s) 475, 795
Cfr10I RCCGGY 1 cut(s) 181
ClaI ATCGAT 1 cut(s) 391
CseI GACGC 1 cut(s) 799
Csp6I GTAC 4 cut(s) 73, 154, 359, 430
CviAII CATG 4 cut(s) 20, 338, 539, 664
CviJI RGCY 6 cut(s) 83, 216, 378, 571, 738, 846
CviKI_1 RGCY 6 cut(s) 83, 216, 378, 571, 738, 846
CviQI GTAC 4 cut(s) 73, 154, 359, 430
DdeI CTNAG 1 cut(s) 739
DinI GGCGCC 1 cut(s) 474
DpnI GATC 5 cut(s) 137, 191, 212, 258, 372
DpnII GATC 5 cut(s) 135, 189, 210, 256, 370
Eam1104I CTCTTC 2 cut(s) 675, 753
EarI CTCTTC 2 cut(s) 675, 753
Eco91I GGTNACC 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 634
EgeI GGCGCC 1 cut(s) 474
EheI GGCGCC 1 cut(s) 474
FaeI CATG 4 cut(s) 23, 341, 542, 667
FalI AAGNNNNNCTT 2 cut(s) 556, 588
FaqI GGGAC 1 cut(s) 662
FatI CATG 4 cut(s) 19, 337, 538, 663
FbaI TGATCA 2 cut(s) 189, 210
Fnu4HI GCNGC 2 cut(s) 569, 808
FokI GGATG 3 cut(s) 698, 731, 832
Fsp4HI GCNGC 2 cut(s) 569, 808
GlaI GCGC 2 cut(s) 474, 794
GluI GCNGC 2 cut(s) 569, 808
HaeII RGCGCY 1 cut(s) 476
HapII CCGG 6 cut(s) 182, 198, 593, 639, 656, 828
HgaI GACGC 1 cut(s) 799
HhaI GCGC 2 cut(s) 475, 795
Hin1I GRCGYC 1 cut(s) 473
Hin1II CATG 4 cut(s) 23, 341, 542, 667
Hin6I GCGC 2 cut(s) 473, 793
HinP1I GCGC 2 cut(s) 473, 793
HinfI GANTC 8 cut(s) 16, 225, 284, 393, 596, 602, 650, 840
HpaII CCGG 6 cut(s) 182, 198, 593, 639, 656, 828
HphI GGTGA 4 cut(s) 518, 635, 646, 842
Hpy188III TCNNGA 4 cut(s) 208, 326, 338, 530
Hpy99I CGWCG 1 cut(s) 793
HpyAV CCTTC 9 cut(s) 227, 288, 463, 497, 514, 558, 582, 614, 689
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 2 cut(s) 233, 350
HpyF3I CTNAG 1 cut(s) 739
HpySE526I ACGT 1 cut(s) 386
Hsp92I GRCGYC 1 cut(s) 473
Hsp92II CATG 4 cut(s) 23, 341, 542, 667
HspAI GCGC 2 cut(s) 473, 793
KasI GGCGCC 1 cut(s) 472
Ksp22I TGATCA 2 cut(s) 189, 210
Kzo9I GATC 5 cut(s) 135, 189, 210, 256, 370
LmnI GCTCC 1 cut(s) 641
LpnPI CCDG 8 cut(s) 195, 211, 448, 606, 652, 669, 720, 841
Lsp1109I GCAGC 1 cut(s) 580
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 4 cut(s) 118, 382, 623, 634
MalI GATC 5 cut(s) 137, 191, 212, 258, 372
MboI GATC 5 cut(s) 135, 189, 210, 256, 370
MboII GAAGA 9 cut(s) 260, 377, 380, 506, 521, 524, 545, 692, 770
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 3 cut(s) 345, 743, 763
Mly113I GGCGCC 1 cut(s) 473
MlyI GAGTC 4 cut(s) 25, 219, 605, 644
MmeI TCCRAC 3 cut(s) 247, 579, 812
MnlI CCTC 7 cut(s) 103, 111, 149, 475, 676, 748, 826
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 1 cut(s) 164
MspI CCGG 6 cut(s) 182, 198, 593, 639, 656, 828
MspR9I CCNGG 1 cut(s) 593
MvnI CGCG 1 cut(s) 793
NarI GGCGCC 1 cut(s) 473
NciI CCSGG 1 cut(s) 593
NdeII GATC 5 cut(s) 135, 189, 210, 256, 370
NlaIII CATG 4 cut(s) 23, 341, 542, 667
NlaIV GGNNCC 1 cut(s) 474
NmuCI GTSAC 4 cut(s) 118, 382, 623, 634
NspI RCATGY 1 cut(s) 667
NspV TTCGAA 1 cut(s) 396
PagI TCATGA 1 cut(s) 337
PciI ACATGT 1 cut(s) 663
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 4 cut(s) 284, 393, 602, 840
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 2 cut(s) 570, 809
PleI GAGTC 4 cut(s) 24, 219, 604, 644
PluTI GGCGCC 1 cut(s) 476
PpsI GAGTC 4 cut(s) 24, 219, 604, 644
Ppu21I YACGTR 1 cut(s) 387
PscI ACATGT 1 cut(s) 663
PspEI GGTNACC 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 474
RsaI GTAC 4 cut(s) 74, 155, 360, 431
RsaNI GTAC 4 cut(s) 73, 154, 359, 430
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 2 cut(s) 569, 808
Sau3AI GATC 5 cut(s) 135, 189, 210, 256, 370
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 4 cut(s) 25, 219, 605, 644
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 1 cut(s) 306
SetI ASST 8 cut(s) 280, 380, 389, 486, 508, 625, 837, 848
SfoI GGCGCC 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 396
SgrAI CRCCGGYG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 3 cut(s) 345, 743, 763
SsiI CCGC 1 cut(s) 807
SspDI GGCGCC 1 cut(s) 472
StyD4I CCNGG 1 cut(s) 591
TaiI ACGT 1 cut(s) 389
TaqI TCGA 5 cut(s) 86, 294, 391, 396, 441
TaqII GACCGA 1 cut(s) 705
TasI AATT 3 cut(s) 345, 743, 763
TatI WGTACW 2 cut(s) 72, 358
TauI GCSGC 1 cut(s) 810
TfiI GAWTC 4 cut(s) 284, 393, 602, 840
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 4 cut(s) 118, 382, 623, 634
TseI GCWGC 1 cut(s) 568
Tsp45I GTSAC 4 cut(s) 118, 382, 623, 634
TspDTI ATGAA 6 cut(s) 83, 326, 354, 507, 516, 555
Van91I CCANNNNNTGG 1 cut(s) 553
XapI RAATTY 2 cut(s) 743, 763
XceI RCATGY 1 cut(s) 667
XmnI GAANNNNTTC 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.