Rorug05G0502400

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000110
Physical Location & Seq
Forward (+)
68489423 .. 68491234
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0502400.1

Sequence Viewer

Length: 1812 bp
ATGTCGTATTGCAGCGTCAACAACACTAGAGGTATACTTTCTTCGCTTCGCTCTACTGCTCGTGTTGCTTCCATCTACAATTTCATGGCCTTGTTTCATTCTCATTCCTCAAACCCAACCACACCTAGAGAAACCCATTTAGATAGGCTTGTGAGAAAACCACCCTTACAGGAGTTAAAGCCGAGAGCGAGTAATGTTGAGGATGCCTTGAAGGTGTTCGATGAAATGCTTCATAGGCGTCCTCTGCCTTCTTCGGTTATCCCTTTCAATCAAATCTTGACTCAACTTGTCAGATTGAAACACTATTCGGCAGTCATCTCTTTGAATCGAAAAATGGGTCTGATCGGAATCGCTTCAAATGTCTATACTCTAACCATTATCATCAATTGCTACTGCCATTTGAATCATATGGGGTTTGGCATATCTGTATTGGGACAATTCTTCAAATTGGGTCTTCAACCAAATGTTGCAACCTTCACCACTCTAATCCACGGCTTTGTTCTCCAAAATAGAGTGGCTCAGGCAGCAACACTTTTCAGCAAAATGGTGGGGGGAGGTCATTGTCAGCCCAATGTGGTTACTTTCAACACACTAATAAAGGGCTTTTGCGTGATGGGAAACAACACTGCGGCTATTCAGTTACTTGGGAAGATGAAAGAAAGAGGATGCGAGCCTGACATAGTTTCCTATAACACCGTCATCGACAGTCATTGTAAGGATATACTAGTTGATCAAGCATTGAACCTCTTCACAGAAATGATTGGTAGAGGTATTGCTCCAAACGTTGTTACTTATACCTCTTTGATTCAAGGAGTTTGCAATTTAGGCCAGTGGAAAGAAGCTACAAGGTTGTTGAATGAAATGGTGAGTCAAAATATCTTTCCAAATGTAATCACCTTCAATGTCTTGGTTGATGCACTCTGTAAGGAGGGTATGGTCGTAGAAGCCAAAAGTGTGGTTGAGATGATGATTCAAAGAGGAACTCAACCTGACACTATTACATACAGTTCCCTTATGGATGGTTACTGTTTGCGAGAAGAGATGGAGGAGGCAAAAAATGTTTTTAATCTAATGGTTAGCAAGGGCTCCATGGTTAATGTTCGGAGTTGTAACATATTGATAAACGGGTATTGTAAGCACAAAAAGATTGATGAGGCCAATAAGGTTTTTCAGGAAATGCTTCCAATGGAACTTGTTCCCGATACCATTACTTATAACACTCTTATCGATGGTTTTTACAAAGCAGGGAGAATACAAGAGGCAGAAAATTTGTTGTCTGAGATGCAAGGTCGCGGCCAACTTCCAGATCTTCAAACTTATAATATTATACTTGATGGCCTGTGTAATAACCAACAACTTTCTACAGCACTAGAATTGCTTAGAGAGATAGAAGGCAGCAAGTTGGAACTAGATATTGTAGCTTACAATATTATCATTGAAGGTTTGTGCAAAGCTGGGAAAATGGATTCTGCAACAGAGGTCTTCTCTGGTTTGTCATCAAAAGACGTTCAGCCTAATGTGAGGACATACAGTATTATGATTTATGGATTTTGTAAAGGACGCTTATTACGTGAAGCAGAAGATTTGCTTAGAGGAATGGAAAAGAAAGGCTGTTCTCCTAATGGATGGACATATAACACAATTATCCGAGGGTTGATCAATAACAATGAGACATCATGGGCTATGAGACTTATTCAAGAAATGGTTGAGAGGGGTTTCTCTGCAGATGCATCAACTATGGAATTGATAATTGGTTTATTGTCTAAGGATGTAGTAGATCCTGCTTTGTTGCTGTTGTTAAAAGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

603

Amino Acids

67.23

Weight (kDa)

7.12

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 149 - 200 1.5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 151 - 183 2.2e-07 PPR repeat
PPR_2 PF13041 154 - 203 1.5e-12 PPR repeat family
PPR_1 PF12854 188 - 219 1.9e-10 PPR repeat
PPR_3 PF13812 189 - 235 6.8e-12 Pentatricopeptide repeat domain
PPR_2 PF13041 190 - 239 3e-17 PPR repeat family
PPR PF01535 193 - 223 1.1e-06 PPR repeat
PPR_long PF17177 209 - 339 2e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 221 - 253 8.4e-11 PPR repeat
PPR_2 PF13041 225 - 274 1.4e-17 PPR repeat family
PPR PF01535 228 - 258 5e-06 PPR repeat
PPR_3 PF13812 249 - 307 1.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 256 - 289 2.5e-11 PPR repeat
PPR_2 PF13041 260 - 309 3.4e-18 PPR repeat family
PPR PF01535 263 - 293 1.4e-06 PPR repeat
PPR_1 PF12854 292 - 323 1.1e-09 PPR repeat
PPR_2 PF13041 295 - 343 4.8e-15 PPR repeat family
PPR PF01535 298 - 327 1.6e-06 PPR repeat
PPR_1 PF12854 327 - 359 4.4e-08 PPR repeat
PPR PF01535 333 - 362 1.2e-06 PPR repeat
PPR_3 PF13812 355 - 409 3.5e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 362 - 393 6.7e-08 PPR repeat
PPR_2 PF13041 366 - 412 3e-15 PPR repeat family
PPR PF01535 369 - 394 2.3e-07 PPR repeat
TPR_24 PF23276 387 - 495 3.3e-10 Fungal tetratrico peptide repeats
PPR_1 PF12854 397 - 429 2.1e-11 PPR repeat
PPR_2 PF13041 400 - 449 2.9e-18 PPR repeat family
PPR PF01535 403 - 432 4e-08 PPR repeat
PPR_1 PF12854 432 - 463 4.1e-07 PPR repeat
PPR_3 PF13812 459 - 514 8.3e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 468 - 495 2.7e-09 PPR repeat
PPR_2 PF13041 471 - 519 9.1e-17 PPR repeat family
PPR_3 PF13812 501 - 550 2e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 501 - 534 1.8e-09 PPR repeat
PPR PF01535 509 - 538 8.3e-07 PPR repeat
PPR_2 PF13041 516 - 553 1e-08 PPR repeat family
PPR_1 PF12854 536 - 569 2.1e-06 PPR repeat
PPR_2 PF13041 544 - 585 3.6e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1215, 1320
AccI GTMKAC 1 cut(s) 34
AccII CGCG 1 cut(s) 1293
AciI CCGC 2 cut(s) 629, 1293
AclI AACGTT 1 cut(s) 783
AclWI GGATC 1 cut(s) 1772
AcoI YGGCCR 1 cut(s) 1294
AcsI RAATTY 1 cut(s) 1267
AcyI GRCGYC 1 cut(s) 238
AhlI ACTAGT 1 cut(s) 724
AjuI GAANNNNNNNTTGG 2 cut(s) 1734, 1766
AluBI AGCT 3 cut(s) 842, 1421, 1454
AluI AGCT 3 cut(s) 842, 1421, 1454
Alw26I GTCTC 2 cut(s) 1664, 1681
AlwI GGATC 1 cut(s) 1772
AoxI GGCC 5 cut(s) 87, 826, 1155, 1294, 1336
ApeKI GCWGC 3 cut(s) 12, 524, 1395
ApoI RAATTY 1 cut(s) 1267
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
Asp700I GAANNNNTTC 6 cut(s) 215, 228, 352, 746, 1179, 1194
AsuHPI GGTGA 3 cut(s) 469, 877, 886
BanII GRGCYC 1 cut(s) 1088
BarI GAAGNNNNNNTAC 2 cut(s) 25, 57
BauI CACGAG 1 cut(s) 60
BbsI GAAGAC 2 cut(s) 446, 1474
BbvI GCAGC 3 cut(s) 24, 536, 1407
BccI CCATC 7 cut(s) 80, 607, 1013, 1036, 1223, 1328, 1620
BceAI ACGGC 1 cut(s) 508
BclI TGATCA 2 cut(s) 730, 1656
BcoDI GTCTC 2 cut(s) 1664, 1681
BcuI ACTAGT 1 cut(s) 724
BfaI CTAG 5 cut(s) 27, 126, 725, 1370, 1409
BfmI CTRYAG 2 cut(s) 1362, 1722
BglII AGATCT 1 cut(s) 1306
BisI GCNGC 5 cut(s) 13, 525, 630, 1294, 1396
BlsI GCNGC 5 cut(s) 14, 526, 631, 1295, 1397
BmiI GGNNCC 1 cut(s) 1087
BmsI GCATC 6 cut(s) 193, 656, 904, 1272, 1717, 1739
BpiI GAAGAC 2 cut(s) 446, 1474
BplI GAGNNNNNCTC 2 cut(s) 1469, 1501
Bpu10I CCTNAGC 1 cut(s) 519
Bsa29I ATCGAT 1 cut(s) 1227
BsaAI YACGTR 1 cut(s) 1571
BsaBI GATNNNNATC 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 3 cut(s) 490, 1089, 1648
Bse1I ACTGG 1 cut(s) 829
Bse8I GATNNNNATC 1 cut(s) 347
BseCI ATCGAT 1 cut(s) 1227
BseDI CCNNGG 3 cut(s) 490, 1089, 1648
BseGI GGATG 5 cut(s) 208, 671, 1024, 1631, 1774
BseJI GATNNNNATC 1 cut(s) 347
BseMII CTCAG 2 cut(s) 533, 1269
BseNI ACTGG 1 cut(s) 829
BseRI GAGGAG 1 cut(s) 1061
BseXI GCAGC 3 cut(s) 24, 536, 1407
BseYI CCCAGC 1 cut(s) 1454
Bsh1236I CGCG 1 cut(s) 1293
BshFI GGCC 5 cut(s) 89, 828, 1157, 1296, 1338
BshVI ATCGAT 1 cut(s) 1227
BslFI GGGAC 1 cut(s) 447
BsmAI GTCTC 2 cut(s) 1664, 1681
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 5 cut(s) 89, 828, 1157, 1296, 1338
Bsp1286I GDGCHC 1 cut(s) 1088
Bsp143I GATC 5 cut(s) 342, 730, 1306, 1656, 1777
Bsp19I CCATGG 1 cut(s) 1089
BspACI CCGC 2 cut(s) 629, 1293
BspANI GGCC 5 cut(s) 89, 828, 1157, 1296, 1338
BspCNI CTCAG 2 cut(s) 532, 1270
BspDI ATCGAT 1 cut(s) 1227
BspFNI CGCG 1 cut(s) 1293
BspHI TCATGA 1 cut(s) 1808
BspLI GGNNCC 1 cut(s) 1087
BspMAI CTGCAG 1 cut(s) 1726
BspPI GGATC 1 cut(s) 1772
BsrI ACTGG 1 cut(s) 829
BssECI CCNNGG 3 cut(s) 490, 1089, 1648
BssMI GATC 5 cut(s) 342, 730, 1306, 1656, 1777
BssNAI GTATAC 1 cut(s) 35
BssNI GRCGYC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 1089
Bst1107I GTATAC 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 60
Bst4CI ACNGT 5 cut(s) 697, 707, 1007, 1028, 1532
Bst6I CTCTTC 2 cut(s) 752, 1032
BstACI GRCGYC 1 cut(s) 238
BstBAI YACGTR 1 cut(s) 1571
BstC8I GCNNGC 1 cut(s) 671
BstDEI CTNAG 5 cut(s) 519, 1278, 1379, 1589, 1764
BstDSI CCRYGG 2 cut(s) 490, 1089
BstF5I GGATG 5 cut(s) 208, 671, 1024, 1631, 1774
BstFNI CGCG 1 cut(s) 1293
BstKTI GATC 5 cut(s) 345, 733, 1309, 1659, 1780
BstMAI GTCTC 2 cut(s) 1664, 1681
BstMBI GATC 5 cut(s) 342, 730, 1306, 1656, 1777
BstMWI GCNNNNNNNGC 5 cut(s) 65, 235, 244, 524, 825
BstSFI CTRYAG 2 cut(s) 1362, 1722
BstUI CGCG 1 cut(s) 1293
BstV1I GCAGC 3 cut(s) 24, 536, 1407
BstV2I GAAGAC 2 cut(s) 446, 1474
BstX2I RGATCY 2 cut(s) 1306, 1777
BstXI CCANNNNNNTGG 1 cut(s) 955
BstYI RGATCY 2 cut(s) 1306, 1777
BstZ17I GTATAC 1 cut(s) 35
Bsu15I ATCGAT 1 cut(s) 1227
BsuRI GGCC 5 cut(s) 89, 828, 1157, 1296, 1338
BsuTUI ATCGAT 1 cut(s) 1227
BtgI CCRYGG 2 cut(s) 490, 1089
BtsCI GGATG 5 cut(s) 208, 671, 1024, 1631, 1774
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 624, 836
Cac8I GCNNGC 1 cut(s) 671
CciI TCATGA 1 cut(s) 1808
ClaI ATCGAT 1 cut(s) 1227
CseI GACGC 3 cut(s) 4, 227, 1569
CviAII CATG 4 cut(s) 85, 1090, 1677, 1809
DdeI CTNAG 5 cut(s) 519, 1278, 1379, 1589, 1764
DpnI GATC 5 cut(s) 344, 732, 1308, 1658, 1779
DpnII GATC 5 cut(s) 342, 730, 1306, 1656, 1777
EaeI YGGCCR 1 cut(s) 1294
Eam1104I CTCTTC 2 cut(s) 752, 1032
EarI CTCTTC 2 cut(s) 752, 1032
Eco130I CCWWGG 1 cut(s) 1089
Eco24I GRGCYC 1 cut(s) 1088
EcoT14I CCWWGG 1 cut(s) 1089
EcoT22I ATGCAT 1 cut(s) 1732
EcoT38I GRGCYC 1 cut(s) 1088
ErhI CCWWGG 1 cut(s) 1089
FaeI CATG 4 cut(s) 88, 1093, 1680, 1812
FalI AAGNNNNNCTT 2 cut(s) 1572, 1604
FaqI GGGAC 1 cut(s) 447
FatI CATG 4 cut(s) 84, 1089, 1676, 1808
FauNDI CATATG 1 cut(s) 408
FbaI TGATCA 2 cut(s) 730, 1656
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 5 cut(s) 13, 525, 630, 1294, 1396
FokI GGATG 5 cut(s) 215, 678, 1031, 1638, 1781
FriOI GRGCYC 1 cut(s) 1088
Fsp4HI GCNGC 5 cut(s) 13, 525, 630, 1294, 1396
FspBI CTAG 5 cut(s) 27, 126, 725, 1370, 1409
GluI GCNGC 5 cut(s) 13, 525, 630, 1294, 1396
GsaI CCCAGC 1 cut(s) 1458
HaeIII GGCC 5 cut(s) 89, 828, 1157, 1296, 1338
HgaI GACGC 3 cut(s) 4, 227, 1569
Hin1I GRCGYC 1 cut(s) 238
Hin1II CATG 4 cut(s) 88, 1093, 1680, 1812
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 9 cut(s) 280, 325, 348, 403, 805, 868, 970, 1466, 1805
HphI GGTGA 3 cut(s) 469, 877, 886
Hpy166II GTNNAC 2 cut(s) 19, 35
Hpy188I TCNGA 6 cut(s) 293, 342, 347, 1104, 1279, 1649
Hpy188III TCNNGA 6 cut(s) 277, 1172, 1199, 1304, 1697, 1809
Hpy8I GTNNAC 2 cut(s) 19, 35
HpyAV CCTTC 6 cut(s) 205, 258, 484, 907, 1385, 1433
HpyCH4III ACNGT 5 cut(s) 697, 707, 1007, 1028, 1532
HpyCH4IV ACGT 3 cut(s) 783, 1506, 1570
HpyCH4V TGCA 9 cut(s) 12, 470, 819, 917, 1285, 1449, 1472, 1724, 1730
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 235, 244, 524, 825
HpyF3I CTNAG 5 cut(s) 519, 1278, 1379, 1589, 1764
HpySE526I ACGT 3 cut(s) 783, 1506, 1570
Hsp92I GRCGYC 1 cut(s) 238
Hsp92II CATG 4 cut(s) 88, 1093, 1680, 1812
Ksp22I TGATCA 2 cut(s) 730, 1656
Kzo9I GATC 5 cut(s) 342, 730, 1306, 1656, 1777
LmnI GCTCC 2 cut(s) 781, 1091
Lsp1109I GCAGC 3 cut(s) 24, 536, 1407
LweI GCATC 6 cut(s) 193, 656, 904, 1272, 1717, 1739
MaeI CTAG 5 cut(s) 27, 126, 725, 1370, 1409
MaeII ACGT 3 cut(s) 783, 1506, 1570
MaeIII GTNAC 5 cut(s) 577, 639, 787, 1022, 1109
MalI GATC 5 cut(s) 344, 732, 1308, 1658, 1779
MboI GATC 5 cut(s) 342, 730, 1306, 1656, 1777
MfeI CAATTG 1 cut(s) 385
MflI RGATCY 2 cut(s) 1306, 1777
MhlI GDGCHC 1 cut(s) 1088
MlyI GAGTC 2 cut(s) 274, 877
MmeI TCCRAC 1 cut(s) 1383
Mph1103I ATGCAT 1 cut(s) 1732
MroXI GAANNNNTTC 6 cut(s) 215, 228, 352, 746, 1179, 1194
MseI TTAA 4 cut(s) 176, 1065, 1095, 1799
MslI CAYNNNNRTG 1 cut(s) 755
MunI CAATTG 1 cut(s) 385
MvnI CGCG 1 cut(s) 1293
MwoI GCNNNNNNNGC 5 cut(s) 65, 235, 244, 524, 825
NcoI CCATGG 1 cut(s) 1089
NdeI CATATG 1 cut(s) 408
NdeII GATC 5 cut(s) 342, 730, 1306, 1656, 1777
NlaIII CATG 4 cut(s) 88, 1093, 1680, 1812
NlaIV GGNNCC 1 cut(s) 1087
NmeAIII GCCGAG 1 cut(s) 207
NsiI ATGCAT 1 cut(s) 1732
PagI TCATGA 1 cut(s) 1808
PcsI WCGNNNNNNNCGW 1 cut(s) 1567
PdmI GAANNNNTTC 6 cut(s) 215, 228, 352, 746, 1179, 1194
PfeI GAWTC 7 cut(s) 325, 348, 403, 805, 970, 1466, 1805
PkrI GCNGC 5 cut(s) 14, 526, 631, 1295, 1397
PleI GAGTC 2 cut(s) 274, 876
PpsI GAGTC 2 cut(s) 274, 876
Ppu21I YACGTR 1 cut(s) 1571
PsiI TTATAA 2 cut(s) 1215, 1320
Psp1406I AACGTT 1 cut(s) 783
PspFI CCCAGC 1 cut(s) 1454
PspN4I GGNNCC 1 cut(s) 1087
PstI CTGCAG 1 cut(s) 1726
PsuI RGATCY 2 cut(s) 1306, 1777
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 4 cut(s) 176, 1065, 1095, 1799
SatI GCNGC 5 cut(s) 13, 525, 630, 1294, 1396
Sau3AI GATC 5 cut(s) 342, 730, 1306, 1656, 1777
SchI GAGTC 2 cut(s) 274, 877
SduI GDGCHC 1 cut(s) 1088
SfaNI GCATC 6 cut(s) 193, 656, 904, 1272, 1717, 1739
SfcI CTRYAG 2 cut(s) 1362, 1722
SmiMI CAYNNNNRTG 1 cut(s) 755
SpeI ACTAGT 1 cut(s) 724
SsiI CCGC 2 cut(s) 629, 1293
SspI AATATT 2 cut(s) 1324, 1429
SspMI CTAG 5 cut(s) 27, 126, 725, 1370, 1409
StyI CCWWGG 1 cut(s) 1089
TaaI ACNGT 5 cut(s) 697, 707, 1007, 1028, 1532
TaiI ACGT 3 cut(s) 786, 1509, 1573
TaqI TCGA 4 cut(s) 219, 328, 702, 1227
TauI GCSGC 2 cut(s) 632, 1296
TfiI GAWTC 7 cut(s) 325, 348, 403, 805, 970, 1466, 1805
Tru1I TTAA 4 cut(s) 176, 1065, 1095, 1799
Tru9I TTAA 4 cut(s) 176, 1065, 1095, 1799
TscAI CASTG 2 cut(s) 631, 836
TseI GCWGC 3 cut(s) 12, 524, 1395
TspDTI ATGAA 7 cut(s) 73, 86, 221, 237, 668, 873, 1797
TspRI CASTG 2 cut(s) 631, 836
XapI RAATTY 1 cut(s) 1267
XmiI GTMKAC 1 cut(s) 34
XmnI GAANNNNTTC 6 cut(s) 215, 228, 352, 746, 1179, 1194
XspI CTAG 5 cut(s) 27, 126, 725, 1370, 1409
Zsp2I ATGCAT 1 cut(s) 1732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.