Rh5BG353200

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000110
Physical Location & Seq
Reverse (-)
54668121 .. 54669312
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG353200.1

Sequence Viewer

Length: 936 bp
ATGGCCTTGTCTGTAACGGACCTCTTAATTGGAAAACTTGCGACCATTCTTGAGTACGAAGGAACAACCATAGCAGGTGTTCGTCATGAAGTTGATAAGATTAAGGAGGAGTTTCTAAGCATGAAAGCTTTCCTAGTGGATGCGGAGGCCAACAAACCAAAAACTGAAGGACAGAAATTGTGGGTTGCAAGAATCAGAGACTTAGCCTATGATGTTGAAGATATCATTGATGAATTCATGTATCACATGTATGAGAAGCAAAGTGGGGGTCGACTTTCAAGGGGGCTACAAAAAACCATTCGCGCTCCATGTAATATTTGGTTCAGGCATAAAATTGCAAAGAAGTTGCGGAAAATTACTGACATGATCAAAGCCATTTCAGAGAGGAATAAAAGATACGGTGTTGGCCTTGTAGGAGGAGCAACTACATCCGAAGATATTCAGAAATTGGTGCAGAACCAAGCGGAGTCTTCGTTTTTCATTATGGAAGACGAACTGGTTGGGATTGAAGGCAAGAAGCAGATACTAATGGGATGGCTAATGGATGACGAGCAACACCAAACTGTTATATCTGTGGTGGGCATGGGAGGTTCTGGAAAGACAACTCTAGTTGCCAAGACCTTCACCAATGAACTGGTAAAGAGAAATTTTGATTGTTATGCATGGATTACTGTTTCCCAAACTTATGATGTGGTACACTTGTTTCGAAGCTTGATAAGGGAACTCTACAAATCAAGGAAGGAAAATTTCCCTGCAATTTTGAATGCCATGAGCCGCATAGAATTGCTAGAGTTACTAGTTGACTACTTGGAGTCCAAAAAATACCTAGTTGTTCTAGATGACGTGTGGGATGTAAAAGTATGGAGAGAAATAAAGGTGGTCTTATGTGTTCTAAGAAGTCGCTGGATCAATGGCAACAAGTCTGCAACAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

311

Amino Acids

35.69

Weight (kDa)

8.74

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 89 2.8e-23 Rx N-terminal domain
NB-ARC PF00931 172 - 296 5.7e-31 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 271
AccII CGCG 1 cut(s) 303
AciI CCGC 4 cut(s) 143, 349, 464, 775
AclWI GGATC 1 cut(s) 914
AcsI RAATTY 3 cut(s) 233, 646, 745
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 2 cut(s) 56, 696
AflIII ACRYGT 2 cut(s) 246, 843
AgsI TTSAA 4 cut(s) 218, 279, 509, 763
AhlI ACTAGT 1 cut(s) 796
AjiI CACGTC 1 cut(s) 844
AluBI AGCT 2 cut(s) 128, 711
AluI AGCT 2 cut(s) 128, 711
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 914
AoxI GGCC 3 cut(s) 3, 147, 406
ApoI RAATTY 3 cut(s) 233, 646, 745
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 2 cut(s) 128, 438
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 616
AsuII TTCGAA 1 cut(s) 706
AvaII GGWCC 1 cut(s) 19
BaeI ACNNNNGTAYC 2 cut(s) 686, 719
BbsI GAAGAC 2 cut(s) 462, 495
BccI CCATC 1 cut(s) 528
BclI TGATCA 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 192
BcuI ACTAGT 1 cut(s) 796
BfaI CTAG 6 cut(s) 134, 608, 788, 797, 827, 836
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 1 cut(s) 775
BlsI GCNGC 1 cut(s) 776
Bme18I GGWCC 1 cut(s) 19
BmgBI CACGTC 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 19
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 2 cut(s) 462, 495
Bpu14I TTCGAA 1 cut(s) 706
BpuEI CTTGAG 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bse1I ACTGG 2 cut(s) 501, 639
BseGI GGATG 5 cut(s) 145, 428, 539, 550, 856
BseNI ACTGG 2 cut(s) 501, 639
BseRI GAGGAG 2 cut(s) 122, 432
BsgI GTGCAG 1 cut(s) 473
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 3 cut(s) 5, 149, 408
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 3 cut(s) 5, 149, 408
Bsp119I TTCGAA 1 cut(s) 706
Bsp143I GATC 2 cut(s) 366, 906
BspACI CCGC 4 cut(s) 143, 349, 464, 775
BspANI GGCC 3 cut(s) 5, 149, 408
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 1 cut(s) 914
BspT104I TTCGAA 1 cut(s) 706
BsrI ACTGG 2 cut(s) 501, 639
BssMI GATC 2 cut(s) 366, 906
Bst4CI ACNGT 3 cut(s) 401, 565, 673
BstBI TTCGAA 1 cut(s) 706
BstDEI CTNAG 3 cut(s) 116, 202, 893
BstF5I GGATG 5 cut(s) 145, 428, 539, 550, 856
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 2 cut(s) 369, 909
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 366, 906
BstNSI RCATGY 1 cut(s) 250
BstUI CGCG 1 cut(s) 303
BstV2I GAAGAC 2 cut(s) 462, 495
BstXI CCANNNNNNTGG 1 cut(s) 634
BsuRI GGCC 3 cut(s) 5, 149, 408
BtrI CACGTC 1 cut(s) 844
BtsCI GGATG 5 cut(s) 145, 428, 539, 550, 856
BveI ACCTGC 1 cut(s) 65
CciI TCATGA 1 cut(s) 85
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 2 cut(s) 55, 695
CviAII CATG 9 cut(s) 86, 121, 238, 247, 309, 364, 583, 663, 769
CviQI GTAC 2 cut(s) 55, 695
DdeI CTNAG 3 cut(s) 116, 202, 893
DpnI GATC 2 cut(s) 368, 908
DpnII GATC 2 cut(s) 366, 906
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 664
FaeI CATG 9 cut(s) 89, 124, 241, 250, 312, 367, 586, 666, 772
FalI AAGNNNNNCTT 2 cut(s) 866, 898
FatI CATG 9 cut(s) 85, 120, 237, 246, 308, 363, 582, 662, 768
FbaI TGATCA 1 cut(s) 366
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 775
FokI GGATG 5 cut(s) 152, 415, 546, 557, 863
Fsp4HI GCNGC 1 cut(s) 775
FspBI CTAG 6 cut(s) 134, 608, 788, 797, 827, 836
GlaI GCGC 1 cut(s) 304
GluI GCNGC 1 cut(s) 775
HaeIII GGCC 3 cut(s) 5, 149, 408
HhaI GCGC 1 cut(s) 305
Hin1II CATG 9 cut(s) 89, 124, 241, 250, 312, 367, 586, 666, 772
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 2 cut(s) 272, 802
HindII GTYRAC 2 cut(s) 272, 802
HindIII AAGCTT 2 cut(s) 126, 709
HinfI GANTC 3 cut(s) 192, 467, 812
HphI GGTGA 1 cut(s) 616
Hpy166II GTNNAC 3 cut(s) 272, 697, 802
Hpy188I TCNGA 4 cut(s) 197, 382, 433, 444
Hpy188III TCNNGA 4 cut(s) 50, 86, 594, 836
Hpy8I GTNNAC 3 cut(s) 272, 697, 802
HpyAV CCTTC 5 cut(s) 53, 161, 503, 631, 733
HpyCH4III ACNGT 3 cut(s) 401, 565, 673
HpyCH4IV ACGT 1 cut(s) 843
HpyCH4V TGCA 6 cut(s) 188, 338, 454, 662, 755, 926
HpyF3I CTNAG 3 cut(s) 116, 202, 893
HpySE526I ACGT 1 cut(s) 843
Hsp92II CATG 9 cut(s) 89, 124, 241, 250, 312, 367, 586, 666, 772
HspAI GCGC 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 2 cut(s) 366, 906
LmnI GCTCC 2 cut(s) 310, 419
LpnPI CCDG 7 cut(s) 60, 310, 482, 579, 620, 765, 889
LweI GCATC 1 cut(s) 130
MaeI CTAG 6 cut(s) 134, 608, 788, 797, 827, 836
MaeII ACGT 1 cut(s) 843
MaeIII GTNAC 2 cut(s) 13, 792
MalI GATC 2 cut(s) 368, 908
MboI GATC 2 cut(s) 366, 906
MboII GAAGA 4 cut(s) 230, 446, 462, 500
MlyI GAGTC 2 cut(s) 476, 821
MnlI CCTC 6 cut(s) 32, 100, 139, 378, 410, 581
Mph1103I ATGCAT 1 cut(s) 664
MroXI GAANNNNTTC 2 cut(s) 128, 438
MseI TTAA 2 cut(s) 26, 102
MslI CAYNNNNRTG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 769
MvnI CGCG 1 cut(s) 303
NdeII GATC 2 cut(s) 366, 906
NlaIII CATG 9 cut(s) 89, 124, 241, 250, 312, 367, 586, 666, 772
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 1 cut(s) 250
NspV TTCGAA 1 cut(s) 706
PagI TCATGA 1 cut(s) 85
PaqCI CACCTGC 1 cut(s) 65
PciI ACATGT 1 cut(s) 246
PctI GAATGC 1 cut(s) 769
PdmI GAANNNNTTC 2 cut(s) 128, 438
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 776
PleI GAGTC 2 cut(s) 475, 820
PpsI GAGTC 2 cut(s) 475, 820
PscI ACATGT 1 cut(s) 246
PspPI GGNCC 1 cut(s) 19
RsaI GTAC 2 cut(s) 56, 696
RsaNI GTAC 2 cut(s) 55, 695
RseI CAYNNNNRTG 1 cut(s) 249
SalI GTCGAC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 26, 102
SatI GCNGC 1 cut(s) 775
Sau3AI GATC 2 cut(s) 366, 906
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 2 cut(s) 476, 821
SetI ASST 9 cut(s) 24, 79, 130, 592, 623, 713, 828, 846, 879
SfaNI GCATC 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 706
SinI GGWCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 796
SsiI CCGC 4 cut(s) 143, 349, 464, 775
SspI AATATT 1 cut(s) 316
SspMI CTAG 6 cut(s) 134, 608, 788, 797, 827, 836
TaaI ACNGT 3 cut(s) 401, 565, 673
TaiI ACGT 1 cut(s) 846
TaqI TCGA 2 cut(s) 271, 706
TauI GCSGC 1 cut(s) 777
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 2 cut(s) 26, 102
Tru9I TTAA 2 cut(s) 26, 102
TspDTI ATGAA 6 cut(s) 102, 137, 226, 246, 469, 645
TspGWI ACGGA 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 3 cut(s) 233, 646, 745
XbaI TCTAGA 1 cut(s) 835
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 2 cut(s) 128, 438
XspI CTAG 6 cut(s) 134, 608, 788, 797, 827, 836
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.