RchiOBHm_Chr5g0018441

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000110
Physical Location & Seq
Forward (+)
12985149 .. 12986400
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29865

Sequence Viewer

Length: 1173 bp
ATGGCCTCATTTGTAATGGACCTCTTAATCGGAAAACTTGTGACGATTCTTGAGAACGAAGGAACAACCATAGCTGGTGTTCGTGACGAAGTTGATAAGGTTAAGGAGGAGTTTCTAAGCATGAAAGCTTTCCTAGTGGATACAGAGGCTAACAAAGCAAAAACTGAAGGAGAGAAATTGTGGGTTGCAAGAATCAGAGACTTAACCCATGATGTTGAAGATATCATTGATGAATTCTTGTATCACATGTACGAGAAGCGAAGTGGGGGTCGACTTTCAAGGGGGCTACACAAAACCATTCGCGCTCCAAGTAATCTTTGGTTCAGGCATAAACTTGCAAACAAGTTGCAGAAAATTACTGAAATGATCAAAGCCATTCCAGAGAGGAATCAAAGGTACAGTGTTGGCCTTGTTGGAGGAGCAACTACATCTGAAGATATTCACAAATTGGTGCAGAACCAAGCTGAGTCTTCGTTTTTCATTATGGAAGACGAACTGGTTGGGATTAAAGGTAAGAAGCAAATACTAATGGGATGGCTCATGGATGAAGAGCAACACCAAACTACTATATCTGGGGTTGGCATGGGAGGTTCTGGAAAGACAACTCTAGAATGGCAACTCGGAAGTCAAATCATAGTTACAACTCGAAAAGAAGATATAGCATCCAATTCTTTTGGAGTTGAAAGCCATGTTCACCATATTCAACCCCTACTAAGGAATGAGGCTTGGGATCTCTTATGCAAAAAAGCATTCTCATCTAATGAGGACAAAACTTGTGGTCTTATGTCTTCTAAGAAGTCACTGGATCAATGGAACAAAGTCCTCAACAGCTTCAATTGGCATCTACATAAAAATCCATTGCTAGACCCTGTTAAAAATATCTTGTTGCTGAGTTTCAATGATTTGCCATCTCAATTGAAACATTGCTTCCTCTATTCCTCTCTTTTCCCAGAAGATTTTGTAATTAAAAGAAAAAGGCTCATTAGATTGTGGATAGCTGAAGAATTTGTTGAGCATGCGAAAGGGGTCACACCAGAAGAAGTTGCAGACAACTATCTAATGGAGCTCTGTTTCCGTACCATGTTACAAGTTGTAGAGAGAAATGGTACAGGAAGGCCGAAAAAAGTTAAGATGCATGATCTGTTGGCGAGAGCTTGCTTTGTCGATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

390

Amino Acids

44.6

Weight (kDa)

7.24

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 89 5.8e-21 Rx N-terminal domain
NB-ARC PF00931 207 - 254 6.2e-07 NB-ARC domain
WHD_DRP PF23559 315 - 382 2.1e-19 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 271
AccII CGCG 1 cut(s) 303
AclWI GGATC 2 cut(s) 738, 813
AcsI RAATTY 2 cut(s) 233, 1004
AcuI CTGAAG 3 cut(s) 186, 453, 1020
AfaI GTAC 4 cut(s) 251, 398, 1078, 1108
AfiI CCNNNNNNNGG 1 cut(s) 714
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 7 cut(s) 218, 279, 683, 704, 835, 898, 919
AluBI AGCT 8 cut(s) 74, 128, 464, 831, 998, 1066, 1154, 1170
AluI AGCT 8 cut(s) 74, 128, 464, 831, 998, 1066, 1154, 1170
Alw21I GWGCWC 1 cut(s) 1068
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 2 cut(s) 738, 813
AoxI GGCC 3 cut(s) 3, 406, 1115
ApoI RAATTY 2 cut(s) 233, 1004
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 2 cut(s) 128, 438
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 686
AvaII GGWCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 1068
BbsI GAAGAC 3 cut(s) 462, 495, 780
Bbv12I GWGCWC 1 cut(s) 1068
BccI CCATC 2 cut(s) 528, 916
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 3 cut(s) 134, 608, 863
BfuI GTATCC 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmsI GCATC 3 cut(s) 671, 850, 1122
BpiI GAAGAC 3 cut(s) 462, 495, 780
BpuEI CTTGAG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 714
Bse1I ACTGG 2 cut(s) 501, 807
Bse3DI GCAATG 2 cut(s) 857, 922
BseGI GGATG 3 cut(s) 539, 550, 662
BseLI CCNNNNNNNGG 1 cut(s) 714
BseMI GCAATG 2 cut(s) 857, 922
BseMII CTCAG 2 cut(s) 456, 881
BseNI ACTGG 2 cut(s) 501, 807
BseRI GAGGAG 2 cut(s) 122, 432
BsgI GTGCAG 1 cut(s) 473
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 3 cut(s) 5, 408, 1117
BsiHKAI GWGCWC 1 cut(s) 1068
BslI CCNNNNNNNGG 1 cut(s) 714
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 749
BsnI GGCC 3 cut(s) 5, 408, 1117
Bsp1286I GDGCHC 1 cut(s) 1068
Bsp143I GATC 4 cut(s) 366, 730, 805, 1138
BspANI GGCC 3 cut(s) 5, 408, 1117
BspCNI CTCAG 2 cut(s) 457, 882
BspFNI CGCG 1 cut(s) 303
BspPI GGATC 2 cut(s) 738, 813
BspQI GCTCTTC 1 cut(s) 543
BsrDI GCAATG 2 cut(s) 857, 922
BsrI ACTGG 2 cut(s) 501, 807
BssMI GATC 4 cut(s) 366, 730, 805, 1138
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 543
BstC8I GCNNGC 2 cut(s) 1017, 1156
BstDEI CTNAG 5 cut(s) 116, 465, 713, 792, 890
BstF5I GGATG 3 cut(s) 539, 550, 662
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 4 cut(s) 369, 733, 808, 1141
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 4 cut(s) 366, 730, 805, 1138
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNSI RCATGY 2 cut(s) 250, 1019
BstUI CGCG 1 cut(s) 303
BstV2I GAAGAC 3 cut(s) 462, 495, 780
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 3 cut(s) 5, 408, 1117
BtsCI GGATG 3 cut(s) 539, 550, 662
BtsIMutI CAGTG 2 cut(s) 406, 800
Cac8I GCNNGC 2 cut(s) 1017, 1156
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 4 cut(s) 250, 397, 1077, 1107
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 9 cut(s) 121, 209, 247, 541, 583, 689, 1016, 1081, 1136
CviQI GTAC 4 cut(s) 250, 397, 1077, 1107
DdeI CTNAG 5 cut(s) 116, 465, 713, 792, 890
DpnI GATC 4 cut(s) 368, 732, 807, 1140
DpnII GATC 4 cut(s) 366, 730, 805, 1138
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Ecl136II GAGCTC 1 cut(s) 1066
Eco24I GRGCYC 1 cut(s) 1068
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 1066
Eco57I CTGAAG 3 cut(s) 186, 453, 1020
EcoICRI GAGCTC 1 cut(s) 1066
EcoRI GAATTC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 1137
EcoT38I GRGCYC 1 cut(s) 1068
FaeI CATG 9 cut(s) 124, 212, 250, 544, 586, 692, 1019, 1084, 1139
FatI CATG 9 cut(s) 120, 208, 246, 540, 582, 688, 1015, 1080, 1135
FbaI TGATCA 1 cut(s) 366
FblI GTMKAC 1 cut(s) 271
FokI GGATG 3 cut(s) 546, 557, 649
FriOI GRGCYC 1 cut(s) 1068
FspBI CTAG 3 cut(s) 134, 608, 863
GlaI GCGC 1 cut(s) 304
HaeIII GGCC 3 cut(s) 5, 408, 1117
HhaI GCGC 1 cut(s) 305
Hin1II CATG 9 cut(s) 124, 212, 250, 544, 586, 692, 1019, 1084, 1139
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 4 cut(s) 46, 192, 388, 467
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 2 cut(s) 272, 694
Hpy188I TCNGA 4 cut(s) 32, 197, 433, 623
Hpy188III TCNNGA 5 cut(s) 50, 83, 380, 594, 608
Hpy8I GTNNAC 2 cut(s) 272, 694
HpyAV CCTTC 3 cut(s) 53, 161, 1107
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 7 cut(s) 188, 338, 349, 454, 741, 1046, 1135
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 5 cut(s) 116, 465, 713, 792, 890
Hsp92II CATG 9 cut(s) 124, 212, 250, 544, 586, 692, 1019, 1084, 1139
HspAI GCGC 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 4 cut(s) 366, 730, 805, 1138
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 3 cut(s) 310, 419, 1063
LweI GCATC 3 cut(s) 671, 850, 1122
MaeI CTAG 3 cut(s) 134, 608, 863
MaeIII GTNAC 6 cut(s) 40, 83, 637, 798, 1027, 1083
MalI GATC 4 cut(s) 368, 732, 807, 1140
MboI GATC 4 cut(s) 366, 730, 805, 1138
MfeI CAATTG 2 cut(s) 835, 914
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 1 cut(s) 1068
MluCI AATT 9 cut(s) 176, 233, 354, 446, 667, 835, 914, 963, 1004
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 394
Mph1103I ATGCAT 1 cut(s) 1137
MroXI GAANNNNTTC 2 cut(s) 128, 438
MseI TTAA 7 cut(s) 26, 102, 203, 507, 873, 966, 1128
MunI CAATTG 2 cut(s) 835, 914
Mva1269I GAATGC 1 cut(s) 749
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 4 cut(s) 366, 730, 805, 1138
NlaIII CATG 9 cut(s) 124, 212, 250, 544, 586, 692, 1019, 1084, 1139
NmuCI GTSAC 4 cut(s) 40, 83, 798, 1027
NsiI ATGCAT 1 cut(s) 1137
NspI RCATGY 2 cut(s) 250, 1019
PaeI GCATGC 1 cut(s) 1019
PciI ACATGT 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 543
PctI GAATGC 1 cut(s) 749
PdmI GAANNNNTTC 2 cut(s) 128, 438
PfeI GAWTC 3 cut(s) 46, 192, 388
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PscI ACATGT 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 1068
PspPI GGNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 730
RsaI GTAC 4 cut(s) 251, 398, 1078, 1108
RsaNI GTAC 4 cut(s) 250, 397, 1077, 1107
SacI GAGCTC 1 cut(s) 1068
SalI GTCGAC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 7 cut(s) 26, 102, 203, 507, 873, 966, 1128
Sau3AI GATC 4 cut(s) 366, 730, 805, 1138
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 476
SduI GDGCHC 1 cut(s) 1068
SfaNI GCATC 3 cut(s) 671, 850, 1122
SinI GGWCC 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SphI GCATGC 1 cut(s) 1019
Sse9I AATT 9 cut(s) 176, 233, 354, 446, 667, 835, 914, 963, 1004
SspMI CTAG 3 cut(s) 134, 608, 863
SstI GAGCTC 1 cut(s) 1068
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 3 cut(s) 271, 646, 1164
TasI AATT 9 cut(s) 176, 233, 354, 446, 667, 835, 914, 963, 1004
TfiI GAWTC 3 cut(s) 46, 192, 388
Tru1I TTAA 7 cut(s) 26, 102, 203, 507, 873, 966, 1128
Tru9I TTAA 7 cut(s) 26, 102, 203, 507, 873, 966, 1128
TscAI CASTG 2 cut(s) 406, 807
TseFI GTSAC 4 cut(s) 40, 83, 798, 1027
Tsp45I GTSAC 4 cut(s) 40, 83, 798, 1027
TspDTI ATGAA 4 cut(s) 137, 246, 469, 561
TspGWI ACGGA 1 cut(s) 1064
TspRI CASTG 2 cut(s) 406, 807
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 2 cut(s) 233, 1004
XbaI TCTAGA 1 cut(s) 607
XceI RCATGY 2 cut(s) 250, 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 2 cut(s) 128, 438
XspI CTAG 3 cut(s) 134, 608, 863
Zsp2I ATGCAT 1 cut(s) 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.