MD06G1153300.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000110
Physical Location & Seq
Forward (+)
29640788 .. 29643683
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1153300.v1.1.491

Sequence Viewer

Length: 1989 bp
ATGAGTTACAAAGAATTGTTAGAGATGTTGTCGGCATACTTGAAGTCTAAAAGGTACCTCGTTGTATTGGATGATGTGTGGGATATTAAACTTTGGCAAGAAATAAAGATACCACTTCTTAATAGGCATCATGGAAGTCGAATCATGCTTACAACTCGAAAGAAAGACATAGCATCCTATTCTTTTGAAGTTGAAAGTCGTCCTATTGAAATTGAACCCTTGGGAAACAATGAAGTTTGGGAGCTCTTTAGCAAGAAAGCATTCTCAACTTACGATAATAAATCTTGTCCACCAGAGCTTGAATCCTTAGCATGGAAACTTGTGGATAAGTGTGAAGGCCTACCTCTGGCAGTGGTAACTTTAGGTGGTCTAATGTCTTCCAAGAGGTCATCATCGGAATGGAGAAGTGTATATAACAGCTTAAATTGGCACTTGACTAACAATCCTATGCTAGAACCAATGAGCAGCATCTTGTTGCTTAGTTTCAACAATTTGCCCAACCGGTTGAAGCCCTGTTTCCTATATTGTGGCCTTTTCCCAGAAGATTATCTCATCAAAAGAAACAGGTTGATCAGGTTGTGGATAGCTGAAGGGTTTGTTGAACCAATTGATGGGGTCACACTAGAAGAAGTTGCAGAGGGCTATCTTGTGGAACTTATTGTTCGTAGCATGCTACAAGTTGAAAAGAATGAAGCTAGAGGACTAGGAGCATGTAAAATGCATGATCTTGTGCGTGAGCTTGCTTTGTCGACATCAAAAAAGGAAAAGTTTGGTGCTACGTATGTTGGCAGAGAAATAGTTGATAAAGCTGAAATCCGGCGATTGTCAATTCAAACAACTGAAAGAGAAATTAATTCTTGCACAGGTATGTCAGAGCTTCGCTCCTTTCTTGTCTTTGGCGCGTTAAAGAAATTGCCTTCTGGATTCAAGTTGTTGAGAGTTCTAGATCTGGAGGGTGCCCCAATTGATAGATTTCCAGATGAACTATTGTACTTGTTCAACTTAAGATATTTAAATTTGAAGGGAACTTTAATTGAGGAGCTTCCAGAATCCATCGGACGGCTTCGCAACCTTCAAACCTTGAACATCCGTGACAGTAAGATAAAGGCACTTCCGAAAGCAATCTGCAAGTTAGTAAACCTACGCCATCTAATCATGCATCGTTACACTGGTGATCATTATAGCTTTATATATGTCAATGGGACAAAACCAGCATCCGATCTAAGTAAATTACAGAAACTGCAATTTTTGCGATGTGTTGAATCAGAAGGAAAGATTATTAAAGGCATCAGGAATATGACCCAACTTACAAACCTCGGGATTACAAATGTGAAAGCAAGTGACGAGATGGACCTATGTGACTCCCTTCAAAAGTTAGAGCTCCTTCACTCTTTGATTTTAATGGCAAGTGATGAAGAGGAGTTTCTTCGAGTTAATGCACTACGTTTGCCTCCTCCATACCTTCAAAAGGTCTGTTTGGCCGGAAAACTAGAAAGGGTACCTCTTTGGTTTGGTTCACTCCAAAACCTGACGTGTATGATTCTATATTGGTCTAGACTTGAAGAAGATGTGCAACCTCACATTCAAGCATTGCCGAATCTTGAAAGGCTTGAGCTATATAATGCATATGTTGGCGAAAAATTATGTTTCTCCAGAGGCTTCATAAAGCTTAAGCGTTTGGAATTACTTGACTTCCCCTTGTTGAATAGTATAGCTATAGAGAAAGGGGCGATGCCAAATCTCCAGGCCTTACGGATTAGGCGTTGCGCGGAGTTAAAGACATTGCCGCAGGGCATTGAGTTCCTTGCTGACGTAGAACGCTTGATTCTGATTTCTGTTCCAATGCAACTTATGGAGTCCGTAAAAGGAGGCACGGATCATCCAAAGGTACAACACATTCCTGAAATCAACATGTATTACGAGAGACAAAATAGGCGGTGTCATGAAAGCTTTTCTGGTAGAAGAATCAAGCCTCAGAAGCACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

663

Amino Acids

76.31

Weight (kDa)

8.83

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 4 - 90 8.5e-23 NB-ARC domain
WHD_DRP PF23559 178 - 248 7.4e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 293 - 593 6.7e-44 Leucine-rich repeat region
LRR_8 PF13855 334 - 386 5e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 54, 1498
AccB1I GGYRCC 3 cut(s) 54, 956, 1498
AccB7I CCANNNNNTGG 1 cut(s) 611
AccI GTMKAC 1 cut(s) 749
AccII CGCG 2 cut(s) 902, 1769
AciI CCGC 3 cut(s) 1769, 1787, 1936
AclWI GGATC 1 cut(s) 1884
AcoI YGGCCR 1 cut(s) 1479
AcsI RAATTY 1 cut(s) 1015
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 4 cut(s) 56, 992, 1500, 1890
AfiI CCNNNNNNNGG 5 cut(s) 312, 346, 611, 1059, 1468
AflII CTTAAG 2 cut(s) 1003, 1670
AflIII ACRYGT 2 cut(s) 1532, 1911
AgeI ACCGGT 1 cut(s) 501
AjiI CACGTC 1 cut(s) 1533
AjnI CCWGG 1 cut(s) 1743
Alw21I GWGCWC 2 cut(s) 246, 1383
Alw26I GTCTC 1 cut(s) 1918
AlwI GGATC 1 cut(s) 1884
AlwNI CAGNNNCTG 1 cut(s) 1240
Ama87I CYCGRG 1 cut(s) 1316
AoxI GGCC 4 cut(s) 337, 529, 1479, 1746
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 1015
AseI ATTAAT 1 cut(s) 852
AsiGI ACCGGT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 260
Asp718I GGTACC 2 cut(s) 54, 1498
AspLEI GCGC 2 cut(s) 902, 1769
AspS9I GGNCC 1 cut(s) 1351
AsuHPI GGTGA 1 cut(s) 1184
AvaI CYCGRG 1 cut(s) 1316
AvaII GGWCC 1 cut(s) 1351
BaeGI GKGCMC 1 cut(s) 961
BanI GGYRCC 3 cut(s) 54, 956, 1498
BanII GRGCYC 2 cut(s) 246, 1383
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 246, 1383
BbvI GCAGC 1 cut(s) 477
BccI CCATC 4 cut(s) 605, 1061, 1155, 1342
BceAI ACGGC 1 cut(s) 1076
BciT130I CCWGG 1 cut(s) 1745
BclI TGATCA 2 cut(s) 570, 1174
BcoDI GTCTC 1 cut(s) 1918
BfaI CTAG 7 cut(s) 452, 623, 696, 704, 944, 1490, 1554
BfmI CTRYAG 1 cut(s) 1716
BfrI CTTAAG 2 cut(s) 1003, 1670
BglII AGATCT 1 cut(s) 946
BisI GCNGC 2 cut(s) 466, 1787
BlsI GCNGC 2 cut(s) 467, 1788
Bme1390I CCNGG 1 cut(s) 1745
Bme18I GGWCC 1 cut(s) 1351
BmeT110I CYCGRG 1 cut(s) 1316
BmgBI CACGTC 1 cut(s) 1533
BmgT120I GGNCC 1 cut(s) 1351
BmiI GGNNCC 3 cut(s) 56, 958, 1500
BmrFI CCNGG 1 cut(s) 1745
BmsI GCATC 7 cut(s) 136, 182, 477, 1168, 1223, 1296, 1722
BpiI GAAGAC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 866, 898
BpmI CTGGAG 3 cut(s) 971, 1636, 1727
Bpu10I CCTNAGC 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 1631
BsaAI YACGTR 1 cut(s) 780
BsaJI CCNNGG 2 cut(s) 219, 1315
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 5 cut(s) 312, 346, 611, 1059, 1468
Bse118I RCCGGY 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 1174
Bse3DI GCAATG 2 cut(s) 1589, 1781
BseBI CCWGG 1 cut(s) 1745
BseDI CCNNGG 2 cut(s) 219, 1315
BseGI GGATG 5 cut(s) 76, 173, 1086, 1214, 1879
BseLI CCNNNNNNNGG 5 cut(s) 312, 346, 611, 1059, 1468
BseMI GCAATG 2 cut(s) 1589, 1781
BseMII CTCAG 1 cut(s) 1988
BseNI ACTGG 1 cut(s) 1174
BseRI GAGGAG 3 cut(s) 1052, 1433, 1443
BseSI GKGCMC 1 cut(s) 961
BseXI GCAGC 1 cut(s) 477
Bsh1236I CGCG 2 cut(s) 902, 1769
BshFI GGCC 4 cut(s) 339, 531, 1481, 1748
BshNI GGYRCC 3 cut(s) 54, 956, 1498
BshTI ACCGGT 1 cut(s) 501
BsiHKAI GWGCWC 2 cut(s) 246, 1383
BsiHKCI CYCGRG 1 cut(s) 1316
BsiSI CCGG 3 cut(s) 502, 817, 1482
BslFI GGGAC 1 cut(s) 1216
BslI CCNNNNNNNGG 5 cut(s) 312, 346, 611, 1059, 1468
BsmAI GTCTC 1 cut(s) 1918
BsmFI GGGAC 1 cut(s) 1216
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 4 cut(s) 339, 531, 1481, 1748
BsoBI CYCGRG 1 cut(s) 1316
Bsp1286I GDGCHC 3 cut(s) 246, 961, 1383
Bsp143I GATC 6 cut(s) 570, 724, 946, 1174, 1219, 1876
BspACI CCGC 3 cut(s) 1769, 1787, 1936
BspANI GGCC 4 cut(s) 339, 531, 1481, 1748
BspCNI CTCAG 1 cut(s) 1987
BspFNI CGCG 2 cut(s) 902, 1769
BspHI TCATGA 1 cut(s) 1942
BspLI GGNNCC 3 cut(s) 56, 958, 1500
BspPI GGATC 1 cut(s) 1884
BspT107I GGYRCC 3 cut(s) 54, 956, 1498
BspTI CTTAAG 2 cut(s) 1003, 1670
BsrDI GCAATG 2 cut(s) 1589, 1781
BsrFI RCCGGY 1 cut(s) 501
BsrI ACTGG 1 cut(s) 1174
BssAI RCCGGY 1 cut(s) 501
BssECI CCNNGG 2 cut(s) 219, 1315
BssMI GATC 6 cut(s) 570, 724, 946, 1174, 1219, 1876
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 1745
Bst4CI ACNGT 1 cut(s) 1097
Bst6I CTCTTC 1 cut(s) 1410
BstAFI CTTAAG 2 cut(s) 1003, 1670
BstAPI GCANNNNNTGC 1 cut(s) 1249
BstBAI YACGTR 1 cut(s) 780
BstC8I GCNNGC 2 cut(s) 671, 741
BstDEI CTNAG 4 cut(s) 307, 479, 1223, 1974
BstENI CCTNNNNNAGG 1 cut(s) 1466
BstF5I GGATG 5 cut(s) 76, 173, 1086, 1214, 1879
BstFNI CGCG 2 cut(s) 902, 1769
BstHHI GCGC 2 cut(s) 902, 1769
BstKTI GATC 6 cut(s) 573, 727, 949, 1177, 1222, 1879
BstMAI GTCTC 1 cut(s) 1918
BstMBI GATC 6 cut(s) 570, 724, 946, 1174, 1219, 1876
BstMWI GCNNNNNNNGC 2 cut(s) 1249, 1978
BstNI CCWGG 1 cut(s) 1745
BstNSI RCATGY 3 cut(s) 673, 714, 1915
BstSCI CCNGG 1 cut(s) 1743
BstSFI CTRYAG 1 cut(s) 1716
BstSLI GKGCMC 1 cut(s) 961
BstSNI TACGTA 1 cut(s) 780
BstUI CGCG 2 cut(s) 902, 1769
BstV1I GCAGC 1 cut(s) 477
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 946
BstYI RGATCY 1 cut(s) 946
BsuRI GGCC 4 cut(s) 339, 531, 1481, 1748
BtgZI GCGATG 2 cut(s) 1267, 1745
BtrI CACGTC 1 cut(s) 1533
BtsCI GGATG 5 cut(s) 76, 173, 1086, 1214, 1879
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 357, 1167
Cac8I GCNNGC 2 cut(s) 671, 741
CaiI CAGNNNCTG 1 cut(s) 1240
CciI TCATGA 1 cut(s) 1942
CfoI GCGC 2 cut(s) 902, 1769
Cfr10I RCCGGY 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 1351
Csp6I GTAC 4 cut(s) 55, 991, 1499, 1889
CspAI ACCGGT 1 cut(s) 501
CviAII CATG 9 cut(s) 131, 145, 312, 670, 711, 722, 1156, 1912, 1943
CviQI GTAC 4 cut(s) 55, 991, 1499, 1889
DdeI CTNAG 4 cut(s) 307, 479, 1223, 1974
DpnI GATC 6 cut(s) 572, 726, 948, 1176, 1221, 1878
DpnII GATC 6 cut(s) 570, 724, 946, 1174, 1219, 1876
DraI TTTAAA 1 cut(s) 1014
EaeI YGGCCR 1 cut(s) 1479
Eam1104I CTCTTC 1 cut(s) 1410
EarI CTCTTC 1 cut(s) 1410
Ecl136II GAGCTC 2 cut(s) 244, 1381
Eco105I TACGTA 1 cut(s) 780
Eco130I CCWWGG 1 cut(s) 219
Eco147I AGGCCT 2 cut(s) 339, 1748
Eco24I GRGCYC 2 cut(s) 246, 1383
Eco47I GGWCC 1 cut(s) 1351
Eco53kI GAGCTC 2 cut(s) 244, 1381
Eco57I CTGAAG 1 cut(s) 609
Eco88I CYCGRG 1 cut(s) 1316
EcoICRI GAGCTC 2 cut(s) 244, 1381
EcoNI CCTNNNNNAGG 1 cut(s) 1466
EcoRII CCWGG 1 cut(s) 1743
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 3 cut(s) 723, 1161, 1627
EcoT38I GRGCYC 2 cut(s) 246, 1383
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 9 cut(s) 134, 148, 315, 673, 714, 725, 1159, 1915, 1946
FaqI GGGAC 1 cut(s) 1216
FatI CATG 9 cut(s) 130, 144, 311, 669, 710, 721, 1155, 1911, 1942
FauNDI CATATG 1 cut(s) 1627
FbaI TGATCA 2 cut(s) 570, 1174
FblI GTMKAC 1 cut(s) 749
Fnu4HI GCNGC 2 cut(s) 466, 1787
FokI GGATG 5 cut(s) 83, 160, 1073, 1201, 1866
FriOI GRGCYC 2 cut(s) 246, 1383
Fsp4HI GCNGC 2 cut(s) 466, 1787
FspBI CTAG 7 cut(s) 452, 623, 696, 704, 944, 1490, 1554
GlaI GCGC 2 cut(s) 901, 1768
GluI GCNGC 2 cut(s) 466, 1787
GsuI CTGGAG 3 cut(s) 971, 1636, 1727
HaeIII GGCC 4 cut(s) 339, 531, 1481, 1748
HapII CCGG 3 cut(s) 502, 817, 1482
HhaI GCGC 2 cut(s) 902, 1769
Hin1II CATG 9 cut(s) 134, 148, 315, 673, 714, 725, 1159, 1915, 1946
Hin6I GCGC 2 cut(s) 900, 1767
HinP1I GCGC 2 cut(s) 900, 1767
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HindIII AAGCTT 2 cut(s) 1667, 1948
HpaII CCGG 3 cut(s) 502, 817, 1482
HphI GGTGA 1 cut(s) 1184
Hpy166II GTNNAC 4 cut(s) 290, 750, 1138, 1517
Hpy188I TCNGA 8 cut(s) 397, 874, 1058, 1116, 1219, 1267, 1830, 1977
Hpy8I GTNNAC 4 cut(s) 290, 750, 1138, 1517
HpyAV CCTTC 9 cut(s) 329, 584, 927, 1015, 1082, 1262, 1376, 1394, 1472
HpyCH4III ACNGT 1 cut(s) 1097
HpyCH4IV ACGT 4 cut(s) 779, 1444, 1532, 1812
HpyF10VI GCNNNNNNNGC 2 cut(s) 1249, 1978
HpyF3I CTNAG 4 cut(s) 307, 479, 1223, 1974
HpySE526I ACGT 4 cut(s) 779, 1444, 1532, 1812
Hsp92II CATG 9 cut(s) 134, 148, 315, 673, 714, 725, 1159, 1915, 1946
HspAI GCGC 2 cut(s) 900, 1767
KpnI GGTACC 2 cut(s) 58, 1502
Ksp22I TGATCA 2 cut(s) 570, 1174
Kzo9I GATC 6 cut(s) 570, 724, 946, 1174, 1219, 1876
LmnI GCTCC 5 cut(s) 241, 707, 887, 1039, 1386
Lsp1109I GCAGC 1 cut(s) 477
LweI GCATC 7 cut(s) 136, 182, 477, 1168, 1223, 1296, 1722
MaeI CTAG 7 cut(s) 452, 623, 696, 704, 944, 1490, 1554
MaeII ACGT 4 cut(s) 779, 1444, 1532, 1812
MaeIII GTNAC 7 cut(s) 5, 355, 616, 1091, 1163, 1340, 1358
MalI GATC 6 cut(s) 572, 726, 948, 1176, 1221, 1878
MboI GATC 6 cut(s) 570, 724, 946, 1174, 1219, 1876
MboII GAAGA 8 cut(s) 369, 554, 638, 1418, 1427, 1574, 1577, 1974
MfeI CAATTG 2 cut(s) 606, 963
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 3 cut(s) 246, 961, 1383
MlyI GAGTC 2 cut(s) 1355, 1865
Mph1103I ATGCAT 3 cut(s) 723, 1161, 1627
MroXI GAANNNNTTC 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 397, 866
MspCI CTTAAG 2 cut(s) 1003, 1670
MspI CCGG 3 cut(s) 502, 817, 1482
MspR9I CCNGG 1 cut(s) 1745
MunI CAATTG 2 cut(s) 606, 963
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 1745
MvnI CGCG 2 cut(s) 902, 1769
MwoI GCNNNNNNNGC 2 cut(s) 1249, 1978
NdeI CATATG 1 cut(s) 1627
NdeII GATC 6 cut(s) 570, 724, 946, 1174, 1219, 1876
NlaIII CATG 9 cut(s) 134, 148, 315, 673, 714, 725, 1159, 1915, 1946
NlaIV GGNNCC 3 cut(s) 56, 958, 1500
NmuCI GTSAC 4 cut(s) 616, 1091, 1340, 1358
NsiI ATGCAT 3 cut(s) 723, 1161, 1627
NspI RCATGY 3 cut(s) 673, 714, 1915
PaeI GCATGC 1 cut(s) 673
PagI TCATGA 1 cut(s) 1942
PceI AGGCCT 2 cut(s) 339, 1748
PciI ACATGT 1 cut(s) 1911
PcsI WCGNNNNNNNCGW 1 cut(s) 1759
PctI GAATGC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 9 cut(s) 141, 302, 924, 1049, 1262, 1540, 1597, 1825, 1965
PflMI CCANNNNNTGG 1 cut(s) 611
PinAI ACCGGT 1 cut(s) 501
PkrI GCNGC 2 cut(s) 467, 1788
PleI GAGTC 2 cut(s) 1355, 1864
PpsI GAGTC 2 cut(s) 1355, 1864
Ppu21I YACGTR 1 cut(s) 780
PscI ACATGT 1 cut(s) 1911
PshBI ATTAAT 1 cut(s) 852
Psp124BI GAGCTC 2 cut(s) 246, 1383
Psp6I CCWGG 1 cut(s) 1743
PspGI CCWGG 1 cut(s) 1743
PspN4I GGNNCC 3 cut(s) 56, 958, 1500
PspPI GGNCC 1 cut(s) 1351
PstNI CAGNNNCTG 1 cut(s) 1240
PsuI RGATCY 1 cut(s) 946
RsaI GTAC 4 cut(s) 56, 992, 1500, 1890
RsaNI GTAC 4 cut(s) 55, 991, 1499, 1889
RseI CAYNNNNRTG 2 cut(s) 397, 866
SacI GAGCTC 2 cut(s) 246, 1383
SalI GTCGAC 1 cut(s) 748
SatI GCNGC 2 cut(s) 466, 1787
Sau3AI GATC 6 cut(s) 570, 724, 946, 1174, 1219, 1876
Sau96I GGNCC 1 cut(s) 1351
SchI GAGTC 2 cut(s) 1355, 1865
ScrFI CCNGG 1 cut(s) 1745
SduI GDGCHC 3 cut(s) 246, 961, 1383
SfaNI GCATC 7 cut(s) 136, 182, 477, 1168, 1223, 1296, 1722
SfcI CTRYAG 1 cut(s) 1716
SinI GGWCC 1 cut(s) 1351
SmiI ATTTAAAT 1 cut(s) 1014
SmiMI CAYNNNNRTG 2 cut(s) 397, 866
SmlI CTYRAG 3 cut(s) 1003, 1610, 1670
SmoI CTYRAG 3 cut(s) 1003, 1610, 1670
SnaBI TACGTA 1 cut(s) 780
SphI GCATGC 1 cut(s) 673
SseBI AGGCCT 2 cut(s) 339, 1748
SsiI CCGC 3 cut(s) 1769, 1787, 1936
SspMI CTAG 7 cut(s) 452, 623, 696, 704, 944, 1490, 1554
SstI GAGCTC 2 cut(s) 246, 1383
StuI AGGCCT 2 cut(s) 339, 1748
StyD4I CCNGG 1 cut(s) 1743
StyI CCWWGG 1 cut(s) 219
SwaI ATTTAAAT 1 cut(s) 1014
TaaI ACNGT 1 cut(s) 1097
TaiI ACGT 4 cut(s) 782, 1447, 1535, 1815
TaqI TCGA 4 cut(s) 139, 157, 749, 1429
TatI WGTACW 1 cut(s) 990
TauI GCSGC 1 cut(s) 1789
TfiI GAWTC 9 cut(s) 141, 302, 924, 1049, 1262, 1540, 1597, 1825, 1965
TscAI CASTG 2 cut(s) 357, 1174
TseFI GTSAC 4 cut(s) 616, 1091, 1340, 1358
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 4 cut(s) 616, 1091, 1340, 1358
TspDTI ATGAA 6 cut(s) 246, 705, 996, 1428, 1651, 1959
TspGWI ACGGA 4 cut(s) 1079, 1768, 1849, 1889
TspRI CASTG 2 cut(s) 357, 1174
Van91I CCANNNNNTGG 1 cut(s) 611
Vha464I CTTAAG 2 cut(s) 1003, 1670
VpaK11BI GGWCC 1 cut(s) 1351
VspI ATTAAT 1 cut(s) 852
XagI CCTNNNNNAGG 1 cut(s) 1466
XapI RAATTY 1 cut(s) 1015
XbaI TCTAGA 2 cut(s) 943, 1553
XceI RCATGY 3 cut(s) 673, 714, 1915
XmiI GTMKAC 1 cut(s) 749
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 7 cut(s) 452, 623, 696, 704, 944, 1490, 1554
Zsp2I ATGCAT 3 cut(s) 723, 1161, 1627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.