MD06G1152400.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
29596011 .. 29597171
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1152400.v1.1.491

Sequence Viewer

Length: 1161 bp
ATGGAGTCAGCATCACTATTGATTGGGAAAATTGCGTTCATTCTTGAGAACGAAGCATCTTCCATAGCGGCAGTCCGTGATGAAGTTGATGAGCATAAGCTGGAGCTCATAAGCTTGAAATCTTTCTTAATAGATGCTGAAGGCAAGGAACCACAAACAGAAGGAGTGAAAACGTGGGTTACAAGCGTCAGAGATTTGACTTGCGATGCGGAAAATGTCATTGATGAGTTCCTGTATCACATATATGACAAGCAAAGTGCGACTCCAATTGCAAAATTGCTCCACAGAACCATTTACTTTCCAAAGAATCTTTGGTATAGGCATCGAATAGCCAAAAAATTACAGAAAATCACAAAAAAGATCAAAGCCATTCCAGAGAGGAATGAGAGATATGGTGTCTCTACAATAGAAGGAACAAGTTCGGATAGTGTTCCCAGATGGGTGAAGAACAAAGCCGAGTCTTCTCTTTATATTATGGAAGATGAACTAATTGGGATTGAAGACAAGAAGCAAACGTTAATGGGATTGTTGATGAATGGAGAGGAAAATAAAATGGTTGTGTCTGTGGTCGGGATGGGAGGATCAGGCAAGGCAACTCTTGTTGCCAATACCTTCAACAACGAAAACGTAAAGCGACATTTTGATTGTTATGCATGGATCACTGTTTCTCAAACTTATGTGATTGAAGACTTATTCAAACAAATGATCAAGAAGTTCCATGAAGGAAGAAAGGAAGAGGTGCCTGAACATTTGAATTCCATGAGTTATGAAGAATTGTTAGAGATGTTGTTGACATACTTGAAGTCTAAAAGGTACCTCGTTGTATTGGATGATGTGTGGGATATTAAACTTTGGCAAGAAATAAGGATACCACTTCTTAATAGACACCATGGAAGTCGAATCATGCTTACAACACGAAAGAAAGACATAGCATTCTATTCTTTTGAAGTTGAAAGTCGTCCTTTTGAAATTGAACCTTTGGAAAACAATGAAGCTTGGGAGCTCTTTAGCAAGAAAGCATTCTCAAGTTACGATAACAAATCTTGTCCACCAGAGCTTGAATCATTAGCATGGAAACTTGTGGAAAAGTGTGAAGGCCTACCTCTGGCAGTGGTAACTTTAGGTGGTCGAATGTCTTCCAAGAGGTCATCATCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

387

Amino Acids

44.47

Weight (kDa)

6.08

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 86 5e-19 Rx N-terminal domain
NB-ARC PF00931 167 - 343 3.1e-48 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 813
AccB1I GGYRCC 2 cut(s) 739, 813
AciI CCGC 2 cut(s) 68, 209
AclI AACGTT 1 cut(s) 515
AclWI GGATC 2 cut(s) 589, 665
AcsI RAATTY 1 cut(s) 754
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 1 cut(s) 1105
AluBI AGCT 6 cut(s) 100, 106, 114, 995, 1003, 1057
AluI AGCT 6 cut(s) 100, 106, 114, 995, 1003, 1057
Alw21I GWGCWC 2 cut(s) 108, 1005
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 2 cut(s) 589, 665
AoxI GGCC 1 cut(s) 1096
ApoI RAATTY 1 cut(s) 754
Asp700I GAANNNNTTC 4 cut(s) 122, 418, 1019, 1135
Asp718I GGTACC 1 cut(s) 813
AsuHPI GGTGA 1 cut(s) 454
BanI GGYRCC 2 cut(s) 739, 813
BanII GRGCYC 2 cut(s) 108, 1005
BbsI GAAGAC 4 cut(s) 453, 507, 693, 1128
Bbv12I GWGCWC 2 cut(s) 108, 1005
BccI CCATC 2 cut(s) 432, 568
BciVI GTATCC 1 cut(s) 861
BclI TGATCA 1 cut(s) 705
BcoDI GTCTC 1 cut(s) 403
BfuI GTATCC 1 cut(s) 861
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 150, 741, 815
BmsI GCATC 5 cut(s) 20, 65, 124, 196, 331
BpiI GAAGAC 4 cut(s) 453, 507, 693, 1128
BpmI CTGGAG 1 cut(s) 122
BpuEI CTTGAG 2 cut(s) 65, 1009
BsaJI CCNNGG 1 cut(s) 889
Bsc4I CCNNNNNNNGG 1 cut(s) 1105
BseDI CCNNGG 1 cut(s) 889
BseGI GGATG 2 cut(s) 579, 835
BseLI CCNNNNNNNGG 1 cut(s) 1105
BshFI GGCC 1 cut(s) 1098
BshNI GGYRCC 2 cut(s) 739, 813
BsiHKAI GWGCWC 2 cut(s) 108, 1005
BslI CCNNNNNNNGG 1 cut(s) 1105
BsmAI GTCTC 1 cut(s) 403
BsmI GAATGC 2 cut(s) 932, 1019
BsnI GGCC 1 cut(s) 1098
Bsp1286I GDGCHC 2 cut(s) 108, 1005
Bsp143I GATC 4 cut(s) 360, 581, 657, 705
Bsp19I CCATGG 1 cut(s) 889
BspACI CCGC 2 cut(s) 68, 209
BspANI GGCC 1 cut(s) 1098
BspLI GGNNCC 3 cut(s) 150, 741, 815
BspPI GGATC 2 cut(s) 589, 665
BspT107I GGYRCC 2 cut(s) 739, 813
BssECI CCNNGG 1 cut(s) 889
BssMI GATC 4 cut(s) 360, 581, 657, 705
BssT1I CCWWGG 1 cut(s) 889
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 1 cut(s) 729
BstDSI CCRYGG 1 cut(s) 889
BstF5I GGATG 2 cut(s) 579, 835
BstKTI GATC 4 cut(s) 363, 584, 660, 708
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 4 cut(s) 360, 581, 657, 705
BstV2I GAAGAC 4 cut(s) 453, 507, 693, 1128
BsuI GTATCC 1 cut(s) 861
BsuRI GGCC 1 cut(s) 1098
BtgI CCRYGG 1 cut(s) 889
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 579, 835
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 2 cut(s) 660, 1116
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 814
CviAII CATG 6 cut(s) 654, 719, 760, 890, 904, 1071
CviQI GTAC 1 cut(s) 814
DpnI GATC 4 cut(s) 362, 583, 659, 707
DpnII GATC 4 cut(s) 360, 581, 657, 705
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Ecl136II GAGCTC 2 cut(s) 106, 1003
Eco130I CCWWGG 1 cut(s) 889
Eco147I AGGCCT 1 cut(s) 1098
Eco24I GRGCYC 2 cut(s) 108, 1005
Eco53kI GAGCTC 2 cut(s) 106, 1003
Eco57I CTGAAG 1 cut(s) 159
EcoICRI GAGCTC 2 cut(s) 106, 1003
EcoRI GAATTC 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 889
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 2 cut(s) 108, 1005
ErhI CCWWGG 1 cut(s) 889
FaeI CATG 6 cut(s) 657, 722, 763, 893, 907, 1074
FalI AAGNNNNNCTT 2 cut(s) 946, 978
FatI CATG 6 cut(s) 653, 718, 759, 889, 903, 1070
FbaI TGATCA 1 cut(s) 705
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 2 cut(s) 586, 842
FriOI GRGCYC 2 cut(s) 108, 1005
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 1098
HgaI GACGC 1 cut(s) 175
Hin1II CATG 6 cut(s) 657, 722, 763, 893, 907, 1074
HincII GTYRAC 1 cut(s) 792
HindII GTYRAC 1 cut(s) 792
HindIII AAGCTT 2 cut(s) 112, 993
HinfI GANTC 6 cut(s) 5, 262, 307, 458, 900, 1061
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 2 cut(s) 792, 1049
Hpy188I TCNGA 3 cut(s) 191, 424, 1156
Hpy188III TCNNGA 4 cut(s) 44, 374, 571, 709
Hpy8I GTNNAC 2 cut(s) 792, 1049
HpyAV CCTTC 6 cut(s) 134, 155, 404, 622, 716, 1088
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 3 cut(s) 173, 515, 627
HpyCH4V TGCA 2 cut(s) 272, 653
HpySE526I ACGT 3 cut(s) 173, 515, 627
Hsp92II CATG 6 cut(s) 657, 722, 763, 893, 907, 1074
KpnI GGTACC 1 cut(s) 817
Ksp22I TGATCA 1 cut(s) 705
Kzo9I GATC 4 cut(s) 360, 581, 657, 705
LmnI GCTCC 3 cut(s) 103, 285, 1000
LpnPI CCDG 8 cut(s) 86, 245, 387, 448, 570, 756, 1065, 1091
LweI GCATC 5 cut(s) 20, 65, 124, 196, 331
MaeII ACGT 3 cut(s) 173, 515, 627
MaeIII GTNAC 3 cut(s) 178, 1028, 1114
MalI GATC 4 cut(s) 362, 583, 659, 707
MboI GATC 4 cut(s) 360, 581, 657, 705
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 108, 1005
MluCI AATT 8 cut(s) 30, 267, 275, 338, 489, 754, 773, 969
MlyI GAGTC 3 cut(s) 14, 256, 467
MnlI CCTC 7 cut(s) 372, 535, 572, 730, 827, 1113, 1137
Mph1103I ATGCAT 1 cut(s) 655
MroXI GAANNNNTTC 4 cut(s) 122, 418, 1019, 1135
MseI TTAA 4 cut(s) 128, 518, 846, 879
MslI CAYNNNNRTG 2 cut(s) 243, 1069
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 2 cut(s) 932, 1019
NcoI CCATGG 1 cut(s) 889
NdeII GATC 4 cut(s) 360, 581, 657, 705
NlaIII CATG 6 cut(s) 657, 722, 763, 893, 907, 1074
NlaIV GGNNCC 3 cut(s) 150, 741, 815
NmeAIII GCCGAG 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 655
PceI AGGCCT 1 cut(s) 1098
PctI GAATGC 2 cut(s) 932, 1019
PdmI GAANNNNTTC 4 cut(s) 122, 418, 1019, 1135
PfeI GAWTC 3 cut(s) 307, 900, 1061
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 3 cut(s) 13, 256, 466
PpsI GAGTC 3 cut(s) 13, 256, 466
Psp124BI GAGCTC 2 cut(s) 108, 1005
Psp1406I AACGTT 1 cut(s) 515
PspN4I GGNNCC 3 cut(s) 150, 741, 815
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
RseI CAYNNNNRTG 2 cut(s) 243, 1069
SacI GAGCTC 2 cut(s) 108, 1005
SaqAI TTAA 4 cut(s) 128, 518, 846, 879
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 4 cut(s) 360, 581, 657, 705
SchI GAGTC 3 cut(s) 14, 256, 467
SduI GDGCHC 2 cut(s) 108, 1005
SfaNI GCATC 5 cut(s) 20, 65, 124, 196, 331
SmiMI CAYNNNNRTG 2 cut(s) 243, 1069
SmlI CTYRAG 2 cut(s) 44, 1024
SmoI CTYRAG 2 cut(s) 44, 1024
Sse9I AATT 8 cut(s) 30, 267, 275, 338, 489, 754, 773, 969
SseBI AGGCCT 1 cut(s) 1098
SsiI CCGC 2 cut(s) 68, 209
SstI GAGCTC 2 cut(s) 108, 1005
StuI AGGCCT 1 cut(s) 1098
StyI CCWWGG 1 cut(s) 889
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 3 cut(s) 176, 518, 630
TaqI TCGA 3 cut(s) 325, 898, 1129
TasI AATT 8 cut(s) 30, 267, 275, 338, 489, 754, 773, 969
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 3 cut(s) 307, 900, 1061
Tru1I TTAA 4 cut(s) 128, 518, 846, 879
Tru9I TTAA 4 cut(s) 128, 518, 846, 879
TscAI CASTG 2 cut(s) 667, 1116
TspDTI ATGAA 7 cut(s) 28, 96, 498, 548, 735, 783, 1005
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 2 cut(s) 667, 1116
XapI RAATTY 1 cut(s) 754
XcmI CCANNNNNNNNNTGG 1 cut(s) 309
XmnI GAANNNNTTC 4 cut(s) 122, 418, 1019, 1135
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.