MD00G1207700.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
50521407 .. 50523186
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1207700.v1.1.491

Sequence Viewer

Length: 978 bp
ATGGAAGACGAACTAATCGGGATTGAAGACAAGAAGCAAAGGTTAATGGGGTTATTGATGAATGGAGAGGAAAATGAAATGGTTGTGTCTGTGGTCGGGATGGGAGGATCAGGCAAGACAACTCTTGTTGCCAATACCTTCAACAACGAAAATGTAAAGTGGCATTTTGACTGTGACTTATTCAAAAATCTGATCAAGCAATTCCACCAAGGAAGAAAGGAAGAGGTGACTGCACAATTGGATTCCATGAGTTACAAAGAATTGTTAGAGATGTTGTCGACATACTTGAAGTCTAAAAGACATCATGGAAGTCGAATCATGCTTACAACTCGAAAGAAAGACATAGCATTCTATTCTTTTGAAGTTGAAAGTTGTCCTATTGAAATTGAACCCTTGGGAAACAATGAAGCTTGGGAGCTCTTTAGCAAGAAAGCATTCTCAACTTACGATAATAAATCTTGTCCACCAGAGCTTGAATCCTTAGCATGGAAACTTGTGGATAAGTGTGAAGGCCTACCTCTGGCAGTGGTAACTTTAGGTGGTCTAATGTCTTCCAAGAGGTCATCATCGGAATGGAAAAGCGTATATAACAGCTTAAATTGGCACTTGACTAACCATCCTATGTTGGAACCAATGAGCAACATCTTGTTGCTTAGTTTCAACAATTTGCCCAACCGGTTGAAGCCATGTTTCCTATATTGTGCCCTTTTCCCAGAAGATTATCTCATCAAAAGACAAAGGTTGATCAGGTTGATAGCTGAAGGGTTTGTTGAACCAATTGATGGGGTCACACCAGAAGAAGTTGCAGAGGGCTATCTTGTGGAACTTATTGTTCGTAGCATGCTACAGGTTGAAAAGAATGAAGCTGGAGGACTAAAAGCATGTAAGATGCATGATCTATTGCATGAGCTTGCTTTGTCGACATCAAAAAAAGGAAAAGTTTGGTGCTACGTATGTTGGCAGAGAAATAGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

326

Amino Acids

37.21

Weight (kDa)

6.28

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 9 - 100 2.2e-10 NB-ARC domain
NB-ARC PF00931 81 - 148 3.3e-08 NB-ARC domain
WHD_DRP PF23559 236 - 305 3.8e-20 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07040
fragaria_vesca FvH4_2g00960 FvH4_2g14930 FvH4_3g11470 FvH4_3g11471 FvH4_3g11481 FvH4_3g11501 FvH4_3g11502 FvH4_3g11503 FvH4_3g11503 FvH4_3g11503 FvH4_3g11504 FvH4_3g11505 FvH4_3g17400 FvH4_3g17401 FvH4_6g29690
malus_domestica MD00G1206000.v1.1 MD00G1207600.v1.1 MD00G1207700.v1.1 MD00G1207800.v1.1 MD05G1008300.v1.1 MD05G1008400.v1.1 MD05G1024900.v1.1 MD05G1025200.v1.1 MD06G1152000.v1.1 MD06G1152400.v1.1 MD06G1152500.v1.1 MD06G1152800.v1.1 MD06G1153100.v1.1 MD06G1153200.v1.1 MD06G1153300.v1.1 MD06G1153700.v1.1 MD06G1154100.v1.1 MD06G1154600.v1.1 MD06G1155300.v1.1 MD06G1155600.v1.1 MD06G1155800.v1.1 MD06G1156200.v1.1 MD06G1156300.v1.1 MD06G1156900.v1.1 MD06G1157000.v1.1 MD10G1003800.v1.1 MD15G1390600.v1.1
prunus_persica Prupe.6G146200_v2.0.a1 Prupe.6G146400_v2.0.a1 Prupe.6G194900_v2.0.a1 Prupe.6G199100_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199400_v2.0.a1 Prupe.6G199500_v2.0.a1 Prupe.6G199700_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G199800_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200200_v2.0.a1 Prupe.6G200400_v2.0.a1 Prupe.6G200600_v2.0.a1 Prupe.6G200900_v2.0.a1 Prupe.6G201100_v2.0.a1 Prupe.8G007600_v2.0.a1 Prupe.8G008500_v2.0.a1 Prupe.8G008600_v2.0.a1 Prupe.8G008700_v2.0.a1 Prupe.8G008900_v2.0.a1 Prupe.8G009000_v2.0.a1 Prupe.8G009300_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009400_v2.0.a1 Prupe.8G009500_v2.0.a1 Prupe.8G009600_v2.0.a1 Prupe.8G009700_v2.0.a1 Prupe.8G010000_v2.0.a1 Prupe.8G010200_v2.0.a1 Prupe.8G010600_v2.0.a1 Prupe.8G010700_v2.0.a1
pyrus_communis pycom05g00420 pycom05g01590 pycom05g01610 pycom05g01640 pycom06g14010 pycom06g14020 pycom06g14050 pycom10g00310 pycom15g34970
rosa_chinensis RchiOBHm_Chr1g0339061 RchiOBHm_Chr1g0348041 RchiOBHm_Chr2g0101551 RchiOBHm_Chr2g0101661 RchiOBHm_Chr2g0135281 RchiOBHm_Chr2g0135361 RchiOBHm_Chr2g0135381 RchiOBHm_Chr4g0410551 RchiOBHm_Chr5g0015461 RchiOBHm_Chr5g0018151 RchiOBHm_Chr5g0018401 RchiOBHm_Chr5g0018431 RchiOBHm_Chr5g0018441 RchiOBHm_Chr5g0018451 RchiOBHm_Chr5g0018461 RchiOBHm_Chr5g0052641 RchiOBHm_Chr5g0052661 RchiOBHm_Chr5g0052681 RchiOBHm_Chr5g0052691 RchiOBHm_Chr5g0052731 RchiOBHm_Chr6g0274421 RchiOBHm_Chr6g0277541 RchiOBHm_Chr6g0278191 RchiOBHm_Chr6g0278241
rosa_laevigata RLG00000013544 RLG00000014183 RLG00000017089 RLG00000019459 RLG00000019460 RLG00000032362 RLG00000032363 RLG00000032367
rosa_multiflora Rmu_co8364011.1_g000001 Rmu_co8390397.1_g000001 Rmu_sc0000694.1_g000010 Rmu_sc0000694.1_g000011 Rmu_sc0000958.1_g000006 Rmu_sc0001289.1_g000014 Rmu_sc0001382.1_g000019 Rmu_sc0002197.1_g000002 Rmu_sc0002197.1_g000036 Rmu_sc0002311.1_g000024 Rmu_sc0003835.1_g000020 Rmu_sc0003910.1_g000007 Rmu_sc0004464.1_g000013 Rmu_sc0006594.1_g000002 Rmu_sc0006594.1_g000011 Rmu_sc0010265.1_g000015 Rmu_sc0010265.1_g000019 Rmu_sc0013020.1_g000002 Rmu_sc0017459.1_g000009 Rmu_sc0034280.1_g000001 Rmu_ssc0000187.1_g000004 Rmu_ssc0000187.1_g000015 Rmu_ssc0000187.1_g000022 Rmu_ssc0000263.1_g000008
rosa_roxburghii Rroxscaffold_1G00028510 Rroxscaffold_1G00059270 Rroxscaffold_1G00059340 Rroxscaffold_1G00061030 Rroxscaffold_2G00109280 Rroxscaffold_2G00109320 Rroxscaffold_2G00141200 Rroxscaffold_4G00307310 Rroxscaffold_7G00191240 Rroxscaffold_7G00194240
rosa_rugosa Rorug01G0190800 Rorug02G0097500 Rorug02G0097600 Rorug02G0324500 Rorug02G0324600 Rorug03G0114500 Rorug05G0042600.1 Rorug05G0043300 Rorug05G0043400 Rorug05G0043600 Rorug05G0043600 Rorug05G0043800 Rorug05G0043900 Rorug05G0044100 Rorug05G0044300 Rorug05G0502000 Rorug05G0502100 Rorug05G0502200 Rorug05G0502300 Rorug05G0502400 Rorug06G0037200 Rorug06G0081600 Rorug06G0115000 Rorug06G0115100
rosa_samantha Rh1AG209400 Rh1BG174400 Rh1CG193800 Rh1DG140600 Rh2BG153300 Rh2BG381100 Rh2BG381200 Rh2BG381400 Rh2BG381500 Rh2BG381700 Rh2CG153800 Rh2CG360300 Rh2DG153600 Rh2DG397500 Rh2DG397800 Rh2DG398000 Rh4AG161500 Rh4BG162800 Rh4CG173900 Rh4CG175800 Rh5AG121200 Rh5AG121300 Rh5AG343200 Rh5AG343500 Rh5BG120100 Rh5BG132000 Rh5BG132100 Rh5BG134200 Rh5BG353100 Rh5BG353200 Rh5BG353400 Rh5BG353600 Rh5BG353700 Rh5BG353900 Rh5CG144300 Rh5CG145900 Rh5CG146200 Rh5CG146300 Rh5CG146400 Rh6AG011300 Rh6AG011400 Rh6AG197600 Rh6AG219900 Rh6BG010200 Rh6BG010300 Rh6BG201400 Rh6BG223800 Rh6DG222800 Rh6DG223000
rosa_wichuraiana Rw1G017450 Rw2G011530 Rw2G030640 Rw2G030650 Rw5G010460 Rw5G011650 Rw5G011860 Rw5G011900 Rw5G011920 Rw5G011970 Rw5G011980 Rw5G012000 Rw5G032280 Rw5G032330 Rw5G032450 Rw6G001330 Rw6G017220 Rw6G019250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 782
AccI GTMKAC 2 cut(s) 278, 920
AclWI GGATC 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 780
AfiI CCNNNNNNNGG 3 cut(s) 486, 520, 782
AgeI ACCGGT 1 cut(s) 675
AluBI AGCT 7 cut(s) 410, 418, 472, 594, 758, 866, 910
AluI AGCT 7 cut(s) 410, 418, 472, 594, 758, 866, 910
Alw21I GWGCWC 1 cut(s) 420
AlwI GGATC 1 cut(s) 115
AoxI GGCC 1 cut(s) 511
AsiGI ACCGGT 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 706
BanII GRGCYC 1 cut(s) 420
BbsI GAAGAC 3 cut(s) 12, 33, 543
Bbv12I GWGCWC 1 cut(s) 420
BccI CCATC 3 cut(s) 94, 624, 776
BclI TGATCA 2 cut(s) 192, 744
BfmI CTRYAG 1 cut(s) 845
BmiI GGNNCC 1 cut(s) 630
BmsI GCATC 1 cut(s) 879
BpiI GAAGAC 3 cut(s) 12, 33, 543
BpmI CTGGAG 1 cut(s) 888
Bpu10I CCTNAGC 1 cut(s) 481
BsaAI YACGTR 1 cut(s) 952
BsaJI CCNNGG 2 cut(s) 208, 393
BsaWI WCCGGW 1 cut(s) 675
Bsc4I CCNNNNNNNGG 3 cut(s) 486, 520, 782
Bse118I RCCGGY 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 208, 393
BseGI GGATG 2 cut(s) 105, 616
BseLI CCNNNNNNNGG 3 cut(s) 486, 520, 782
BseSI GKGCMC 1 cut(s) 706
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 513
BshTI ACCGGT 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 676
BslI CCNNNNNNNGG 3 cut(s) 486, 520, 782
BsmI GAATGC 2 cut(s) 347, 434
BsnI GGCC 1 cut(s) 513
Bsp1286I GDGCHC 2 cut(s) 420, 706
Bsp143I GATC 4 cut(s) 107, 192, 744, 895
BspANI GGCC 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 630
BspPI GGATC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 675
BssAI RCCGGY 1 cut(s) 675
BssECI CCNNGG 2 cut(s) 208, 393
BssMI GATC 4 cut(s) 107, 192, 744, 895
BssT1I CCWWGG 2 cut(s) 208, 393
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 952
BstC8I GCNNGC 2 cut(s) 842, 912
BstDEI CTNAG 2 cut(s) 481, 653
BstF5I GGATG 2 cut(s) 105, 616
BstKTI GATC 4 cut(s) 110, 195, 747, 898
BstMBI GATC 4 cut(s) 107, 192, 744, 895
BstNSI RCATGY 2 cut(s) 844, 885
BstSFI CTRYAG 1 cut(s) 845
BstSLI GKGCMC 1 cut(s) 706
BstSNI TACGTA 1 cut(s) 952
BstV2I GAAGAC 3 cut(s) 12, 33, 543
BsuRI GGCC 1 cut(s) 513
BtsCI GGATG 2 cut(s) 105, 616
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 2 cut(s) 842, 912
Cfr10I RCCGGY 1 cut(s) 675
CspAI ACCGGT 1 cut(s) 675
CviAII CATG 9 cut(s) 247, 305, 319, 486, 687, 841, 882, 893, 905
DdeI CTNAG 2 cut(s) 481, 653
DpnI GATC 4 cut(s) 109, 194, 746, 897
DpnII GATC 4 cut(s) 107, 192, 744, 895
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 418
Eco105I TACGTA 1 cut(s) 952
Eco130I CCWWGG 2 cut(s) 208, 393
Eco147I AGGCCT 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 420
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 780
EcoICRI GAGCTC 1 cut(s) 418
EcoT14I CCWWGG 2 cut(s) 208, 393
EcoT22I ATGCAT 1 cut(s) 894
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 208, 393
FaeI CATG 9 cut(s) 250, 308, 322, 489, 690, 844, 885, 896, 908
FatI CATG 9 cut(s) 246, 304, 318, 485, 686, 840, 881, 892, 904
FbaI TGATCA 2 cut(s) 192, 744
FblI GTMKAC 2 cut(s) 278, 920
FokI GGATG 2 cut(s) 112, 603
FriOI GRGCYC 1 cut(s) 420
GsuI CTGGAG 1 cut(s) 888
HaeIII GGCC 1 cut(s) 513
HapII CCGG 1 cut(s) 676
Hin1II CATG 9 cut(s) 250, 308, 322, 489, 690, 844, 885, 896, 908
HincII GTYRAC 2 cut(s) 279, 921
HindII GTYRAC 2 cut(s) 279, 921
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 3 cut(s) 242, 315, 476
HpaII CCGG 1 cut(s) 676
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 3 cut(s) 279, 464, 921
Hpy188I TCNGA 2 cut(s) 192, 571
Hpy188III TCNNGA 2 cut(s) 19, 97
Hpy8I GTNNAC 3 cut(s) 279, 464, 921
HpyAV CCTTC 3 cut(s) 148, 503, 755
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 951
HpyCH4V TGCA 4 cut(s) 233, 806, 892, 904
HpyF3I CTNAG 2 cut(s) 481, 653
HpySE526I ACGT 1 cut(s) 951
Hsp92II CATG 9 cut(s) 250, 308, 322, 489, 690, 844, 885, 896, 908
Ksp22I TGATCA 2 cut(s) 192, 744
Kzo9I GATC 4 cut(s) 107, 192, 744, 895
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 9 cut(s) 96, 480, 506, 689, 726, 733, 807, 833, 852
LweI GCATC 1 cut(s) 879
MaeII ACGT 1 cut(s) 951
MaeIII GTNAC 5 cut(s) 173, 226, 251, 529, 787
MalI GATC 4 cut(s) 109, 194, 746, 897
MboI GATC 4 cut(s) 107, 192, 744, 895
MboII GAAGA 7 cut(s) 17, 38, 225, 233, 543, 728, 809
MfeI CAATTG 2 cut(s) 236, 777
MhlI GDGCHC 2 cut(s) 420, 706
MluCI AATT 7 cut(s) 200, 236, 260, 384, 598, 664, 777
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 7 cut(s) 61, 98, 217, 528, 552, 802, 863
Mph1103I ATGCAT 1 cut(s) 894
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 2 cut(s) 44, 596
MslI CAYNNNNRTG 1 cut(s) 571
MspI CCGG 1 cut(s) 676
MunI CAATTG 2 cut(s) 236, 777
Mva1269I GAATGC 2 cut(s) 347, 434
NdeII GATC 4 cut(s) 107, 192, 744, 895
NlaIII CATG 9 cut(s) 250, 308, 322, 489, 690, 844, 885, 896, 908
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 3 cut(s) 173, 226, 787
NsiI ATGCAT 1 cut(s) 894
NspI RCATGY 2 cut(s) 844, 885
PaeI GCATGC 1 cut(s) 844
PceI AGGCCT 1 cut(s) 513
PctI GAATGC 2 cut(s) 347, 434
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 3 cut(s) 242, 315, 476
PflMI CCANNNNNTGG 1 cut(s) 782
PinAI ACCGGT 1 cut(s) 675
Ppu21I YACGTR 1 cut(s) 952
Psp124BI GAGCTC 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 630
RseI CAYNNNNRTG 1 cut(s) 571
SacI GAGCTC 1 cut(s) 420
SalI GTCGAC 2 cut(s) 277, 919
SaqAI TTAA 2 cut(s) 44, 596
Sau3AI GATC 4 cut(s) 107, 192, 744, 895
SduI GDGCHC 2 cut(s) 420, 706
SfaNI GCATC 1 cut(s) 879
SfcI CTRYAG 1 cut(s) 845
SmiMI CAYNNNNRTG 1 cut(s) 571
SnaBI TACGTA 1 cut(s) 952
SphI GCATGC 1 cut(s) 844
Sse9I AATT 7 cut(s) 200, 236, 260, 384, 598, 664, 777
SseBI AGGCCT 1 cut(s) 513
SstI GAGCTC 1 cut(s) 420
StuI AGGCCT 1 cut(s) 513
StyI CCWWGG 2 cut(s) 208, 393
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 1 cut(s) 954
TaqI TCGA 4 cut(s) 278, 313, 331, 920
TasI AATT 7 cut(s) 200, 236, 260, 384, 598, 664, 777
TfiI GAWTC 3 cut(s) 242, 315, 476
Tru1I TTAA 2 cut(s) 44, 596
Tru9I TTAA 2 cut(s) 44, 596
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 3 cut(s) 173, 226, 787
Tsp45I GTSAC 3 cut(s) 173, 226, 787
TspDTI ATGAA 4 cut(s) 74, 90, 420, 876
TspRI CASTG 1 cut(s) 531
Van91I CCANNNNNTGG 1 cut(s) 782
XceI RCATGY 2 cut(s) 844, 885
XmiI GTMKAC 2 cut(s) 278, 920
XmnI GAANNNNTTC 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.