Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008536

Physical Location & Seq

Genomic Coordinates Forward (+)

23125038 .. 23128996

Gene Structure 3959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20160.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAAACCGAAAGAAAAGGAAAAGAAAAAAAGCTTGACAGTCGGAGTTCATCCATGGCGGGTTCCGATCCAAACAAGTTGCTCGCCAAAGCCGATAAACTAACAAGACTCAGTCTTACAAGGTGGAGTGCTGATTGGAATAGCGCTACTCTTTTGTATGAACAAGCTGCTAATGGGTTTAGGATTGCCAAGGATTATGAGAAAGCTAAGGAAGCGTTGGAAAAAGCTTCGAAGGGACAAGAATTGATCTCTTCACCCTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCTCTAGCAAAGGAGTTAGGGAAGTGGAATGAAGTTGCTGACTTTTATAAAAGGGCGTCTGAATTGTACTCTGAGTGTGGGAGATCACAACCTGCATCAGATGCTCTTGCAAAAGGGGCACGTGCTATTGAAGATTCTATGCCTGATGAAGCTATTCAACTTTACACTGATGCTTGTGCTATTCTTGAAGAGGATGGCAAGGAGCAAATGGCCTTTGATCTATATCGTGATGCCACTAGTGTTTACATAAAAAGTGAGAAGTATACAGATGCTGCTGCTTTCATGCTCAGATTTGGGTTATCCGCTGATAAGTGCAATGCTACACATAGCCAGTGCAAGGCATATCTTGGTGCGATTATTATTTACCTTTATGTCCATGACATCAAGCAAGCAGAACAATGCTACAATGACTGCTCCCAGGTTGATGCATTTTTGAGAAGCGACCAGTGCCGTTTTGCTGGTAAACTTCTGTCAGCTTACACAGGTGGTGACGTGGAAGAAATAAAAAAACTTGCTCAGTCAAGCACGGTTAATCATCTTGATCACATGATCATCAGGCTCGCCAGGAAACTGCCGATGGGTGATGTGAGTGCGCTGAAGACCCATGCTTCCGAGGAGCAAGAACCGCTGGATGAAGATGACCTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019905 GO:0031090 GO:0031201 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAP

Protein Analysis

314

Amino Acids

34.8

Weight (kDa)

5.26

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20410 AT4G20410
fragaria_vesca	FvH4_3g11520 FvH4_3g11520 FvH4_3g11520
malus_domestica	MD00G1097300.v1.1
prunus_persica	Prupe.4G102500_v2.0.a1 Prupe.4G102500_v2.0.a1
pyrus_communis	pycom05g24690 pycom10g20160
rosa_chinensis	RchiOBHm_Chr5g0018471
rosa_laevigata	RLG00000032368
rosa_multiflora	Rmu_sc0004464.1_g000015
rosa_roxburghii	Rroxscaffold_1G00059260
rosa_rugosa	Rorug05G0044300
rosa_samantha	Rh5AG135700 Rh5BG134400 Rh5CG146500 Rh5DG135600
rosa_wichuraiana	Rw5G011870 Rw5G011910 Rw5G011990 Rw5G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	391
AccI	GTMKAC	1 cut(s)	554
AciI	CCGC	3 cut(s)	59, 594, 917
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	908
AcvI	CACGTG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	1 cut(s)	359
AfeI	AGCGCT	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	3 cut(s)	422, 449, 479
AhlI	ACTAGT	1 cut(s)	527
AjiI	CACGTC	1 cut(s)	784
AjnI	CCWGG	3 cut(s)	257, 708, 854
AluBI	AGCT	6 cut(s)	34, 167, 206, 227, 443, 767
AluI	AGCT	6 cut(s)	34, 167, 206, 227, 443, 767
AlwI	GGATC	1 cut(s)	62
AlwNI	CAGNNNCTG	1 cut(s)	563
Aor51HI	AGCGCT	1 cut(s)	145
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	6 cut(s)	167, 266, 287, 290, 563, 566
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	2 cut(s)	146, 886
AsuHPI	GGTGA	3 cut(s)	246, 791, 884
AsuII	TTCGAA	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	412
BbrPI	CACGTG	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	896
BbvI	GCAGC	6 cut(s)	154, 253, 274, 277, 550, 553
BccI	CCATC	2 cut(s)	479, 862
BceAI	ACGGC	1 cut(s)	726
BciT130I	CCWGG	3 cut(s)	259, 710, 856
BclI	TGATCA	2 cut(s)	832, 840
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	2 cut(s)	296, 528
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	6 cut(s)	168, 267, 288, 291, 564, 567
BlsI	GCNGC	6 cut(s)	169, 268, 289, 292, 565, 568
Bme1390I	CCNGG	3 cut(s)	259, 710, 856
BmgBI	CACGTC	1 cut(s)	784
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	3 cut(s)	259, 710, 856
BmsI	GCATC	7 cut(s)	253, 382, 395, 451, 511, 550, 706
BpiI	GAAGAC	1 cut(s)	896
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	6 cut(s)	54, 189, 257, 258, 708, 903
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse1I	ACTGG	2 cut(s)	622, 736
Bse3DI	GCAATG	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	3 cut(s)	259, 710, 856
BseDI	CCNNGG	6 cut(s)	54, 189, 257, 258, 708, 903
BseGI	GGATG	4 cut(s)	50, 268, 490, 928
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	613
BseMII	CTCAG	4 cut(s)	124, 354, 592, 821
BseNI	ACTGG	2 cut(s)	622, 736
BseRI	GAGGAG	1 cut(s)	920
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	6 cut(s)	154, 253, 274, 277, 550, 553
BshFI	GGCC	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	503
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	6 cut(s)	67, 246, 374, 508, 832, 840
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	3 cut(s)	59, 594, 917
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	4 cut(s)	123, 355, 591, 820
BspLI	GGNNCC	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	622, 736
BssECI	CCNNGG	6 cut(s)	54, 189, 257, 258, 708, 903
BssMI	GATC	6 cut(s)	67, 246, 374, 508, 832, 840
BssNAI	GTATAC	1 cut(s)	555
BssNI	GRCGYC	1 cut(s)	347
BssT1I	CCWWGG	2 cut(s)	54, 189
Bst1107I	GTATAC	1 cut(s)	555
Bst2UI	CCWGG	3 cut(s)	259, 710, 856
Bst4CI	ACNGT	2 cut(s)	41, 820
Bst6I	CTCTTC	2 cut(s)	256, 474
BstACI	GRCGYC	1 cut(s)	347
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	84, 681, 852
BstDEI	CTNAG	5 cut(s)	110, 207, 363, 578, 807
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	50, 268, 490, 928
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	146, 886
BstKTI	GATC	6 cut(s)	70, 249, 377, 511, 835, 843
BstMBI	GATC	6 cut(s)	67, 246, 374, 508, 832, 840
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 296, 392, 407, 738, 916
BstNI	CCWGG	3 cut(s)	259, 710, 856
BstSCI	CCNGG	3 cut(s)	257, 708, 854
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	6 cut(s)	154, 253, 274, 277, 550, 553
BstV2I	GAAGAC	1 cut(s)	896
BstZ17I	GTATAC	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	784
BtsCI	GGATG	4 cut(s)	50, 268, 490, 928
BtsIMutI	CAGTG	3 cut(s)	456, 629, 743
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	3 cut(s)	84, 681, 852
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	2 cut(s)	146, 886
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	5 cut(s)	55, 574, 668, 838, 896
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	5 cut(s)	110, 207, 363, 578, 807
DpnI	GATC	6 cut(s)	69, 248, 376, 510, 834, 842
DpnII	GATC	6 cut(s)	67, 246, 374, 508, 832, 840
Eam1104I	CTCTTC	2 cut(s)	256, 474
EarI	CTCTTC	2 cut(s)	256, 474
Eco130I	CCWWGG	2 cut(s)	54, 189
Eco47III	AGCGCT	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	908
Eco72I	CACGTG	1 cut(s)	413
EcoRII	CCWGG	3 cut(s)	257, 708, 854
EcoT14I	CCWWGG	2 cut(s)	54, 189
EcoT22I	ATGCAT	1 cut(s)	721
ErhI	CCWWGG	2 cut(s)	54, 189
FaeI	CATG	5 cut(s)	58, 577, 671, 841, 899
FalI	AAGNNNNNCTT	1 cut(s)	918
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	5 cut(s)	54, 573, 667, 837, 895
FauI	CCCGC	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	276
FbaI	TGATCA	2 cut(s)	832, 840
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	6 cut(s)	168, 267, 288, 291, 564, 567
FokI	GGATG	4 cut(s)	37, 275, 497, 935
Fsp4HI	GCNGC	6 cut(s)	168, 267, 288, 291, 564, 567
FspBI	CTAG	2 cut(s)	296, 528
GlaI	GCGC	2 cut(s)	145, 885
GluI	GCNGC	6 cut(s)	168, 267, 288, 291, 564, 567
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	503
HgaI	GACGC	1 cut(s)	336
HhaI	GCGC	2 cut(s)	146, 886
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	5 cut(s)	58, 577, 671, 841, 899
Hin6I	GCGC	2 cut(s)	144, 884
HinP1I	GCGC	2 cut(s)	144, 884
HindIII	AAGCTT	2 cut(s)	32, 225
HinfI	GANTC	3 cut(s)	108, 281, 425
HphI	GGTGA	3 cut(s)	246, 791, 884
Hpy166II	GTNNAC	3 cut(s)	535, 555, 755
Hpy188I	TCNGA	7 cut(s)	45, 67, 352, 364, 391, 581, 904
Hpy188III	TCNNGA	3 cut(s)	476, 518, 830
Hpy8I	GTNNAC	3 cut(s)	535, 555, 755
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	41, 820
HpyCH4IV	ACGT	2 cut(s)	412, 783
HpyCH4V	TGCA	6 cut(s)	269, 386, 401, 606, 627, 719
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 296, 392, 407, 738, 916
HpyF3I	CTNAG	5 cut(s)	110, 207, 363, 578, 807
HpySE526I	ACGT	2 cut(s)	412, 783
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	5 cut(s)	58, 577, 671, 841, 899
HspAI	GCGC	2 cut(s)	144, 884
Ksp22I	TGATCA	2 cut(s)	832, 840
Kzo9I	GATC	6 cut(s)	67, 246, 374, 508, 832, 840
LmnI	GCTCC	3 cut(s)	493, 710, 907
Lsp1109I	GCAGC	6 cut(s)	154, 253, 274, 277, 550, 553
LweI	GCATC	7 cut(s)	253, 382, 395, 451, 511, 550, 706
MaeI	CTAG	2 cut(s)	296, 528
MaeII	ACGT	2 cut(s)	412, 783
MaeIII	GTNAC	1 cut(s)	779
MalI	GATC	6 cut(s)	69, 248, 376, 510, 834, 842
MboI	GATC	6 cut(s)	67, 246, 374, 508, 832, 840
MboII	GAAGA	6 cut(s)	243, 434, 491, 800, 901, 938
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	2 cut(s)	242, 353
MlyI	GAGTC	2 cut(s)	102, 290
MmeI	TCCRAC	2 cut(s)	23, 198
MnlI	CCTC	2 cut(s)	475, 898
Mph1103I	ATGCAT	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	1 cut(s)	822
MspA1I	CMGCKG	2 cut(s)	596, 919
MspR9I	CCNGG	3 cut(s)	259, 710, 856
MvaI	CCWGG	3 cut(s)	259, 710, 856
MwoI	GCNNNNNNNGC	6 cut(s)	212, 296, 392, 407, 738, 916
NcoI	CCATGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	6 cut(s)	67, 246, 374, 508, 832, 840
NlaIII	CATG	5 cut(s)	58, 577, 671, 841, 899
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	779
NsiI	ATGCAT	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	230
PasI	CCCWGGG	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	425
PflFI	GACNNNGTC	1 cut(s)	111
PkrI	GCNGC	6 cut(s)	169, 268, 289, 292, 565, 568
PleI	GAGTC	2 cut(s)	102, 289
PmaCI	CACGTG	1 cut(s)	413
PmlI	CACGTG	1 cut(s)	413
PpsI	GAGTC	2 cut(s)	102, 289
Ppu21I	YACGTR	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	339
Psp6I	CCWGG	3 cut(s)	257, 708, 854
PspCI	CACGTG	1 cut(s)	413
PspGI	CCWGG	3 cut(s)	257, 708, 854
PspN4I	GGNNCC	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	563
PsyI	GACNNNGTC	1 cut(s)	111
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	822
SatI	GCNGC	6 cut(s)	168, 267, 288, 291, 564, 567
Sau3AI	GATC	6 cut(s)	67, 246, 374, 508, 832, 840
SchI	GAGTC	2 cut(s)	102, 290
ScrFI	CCNGG	3 cut(s)	259, 710, 856
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	7 cut(s)	253, 382, 395, 451, 511, 550, 706
SfuI	TTCGAA	1 cut(s)	230
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	2 cut(s)	242, 353
SsiI	CCGC	3 cut(s)	59, 594, 917
SspMI	CTAG	2 cut(s)	296, 528
StyD4I	CCNGG	3 cut(s)	257, 708, 854
StyI	CCWWGG	2 cut(s)	54, 189
TaaI	ACNGT	2 cut(s)	41, 820
TaiI	ACGT	2 cut(s)	415, 786
TaqI	TCGA	1 cut(s)	230
TasI	AATT	2 cut(s)	242, 353
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	822
Tru9I	TTAA	1 cut(s)	822
TscAI	CASTG	3 cut(s)	463, 629, 743
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	6 cut(s)	167, 266, 287, 290, 563, 566
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	6 cut(s)	39, 174, 336, 453, 562, 939
TspRI	CASTG	3 cut(s)	463, 629, 743
Tth111I	GACNNNGTC	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	2 cut(s)	296, 528
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.