Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008536

Physical Location & Seq

Genomic Coordinates Reverse (-)

13814708 .. 13817406

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGTCTGCTGCTGCTCTAGCAAAGGAGTTAGGCAAGTGGAATGAAGTTGCTGATTTTTACAGAAGGGCGTCAGAATTATACACTGTGTGCGGAAGAGCACAGCCTGCATCAGATGCTCTTGCAAAAGGAGCCCGTGCTCTTGAAGATCCTGTGCCCGAAGAAGCTATTCAACTTTACATTGAGGCGTGCACTATTCTTGAAGACGATGGCAAAGAGCAAATGGCCTTTGATCTATATCGAGATGTTACTAGTGCTTGTATAAAACTTCAGAAGTATACAGATGCTGCGGCTTTCCTGTTGAGATGGGGCTTAGCAGCTGATAAGTGCAATGTTACCCATAGCCAGTGCAAGGCATATCTCAGTGCAATTCTCATATACCTGTATATTCATGATGTCAAGCAAGCAGAAAAATGCTACAACGATTGCTCCCAGGTCGATGCTTTTTTGGGCAATGATCATGGCCGATGTGCTAGTAAACTTCTTTCCGCATACACAGAAGGTGATATTGAAGAAATCAAACGACTTGCTCAGTCAAGCGCAGTTTCTCATCTTGATCACATGGTCATCAGACTCGCCAGGAAACTGCCTACAGGTGATGTCAGTGGACTAAAGACAAATGCGTCCAAGGAGGAAGAAGAAGAATTGGATGAAGATGACCTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019905 GO:0031090 GO:0031201 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNAP

Protein Analysis

222

Amino Acids

24.61

Weight (kDa)

4.79

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNAP	PF14938	10 - 190	6.9e-12	Soluble NSF attachment protein, SNAP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20410 AT4G20410
fragaria_vesca	FvH4_3g11520 FvH4_3g11520 FvH4_3g11520
malus_domestica	MD00G1097300.v1.1
prunus_persica	Prupe.4G102500_v2.0.a1 Prupe.4G102500_v2.0.a1
pyrus_communis	pycom05g24690 pycom10g20160
rosa_chinensis	RchiOBHm_Chr5g0018471
rosa_laevigata	RLG00000032368
rosa_multiflora	Rmu_sc0004464.1_g000015
rosa_roxburghii	Rroxscaffold_1G00059260
rosa_rugosa	Rorug05G0044300
rosa_samantha	Rh5AG135700 Rh5BG134400 Rh5CG146500 Rh5DG135600
rosa_wichuraiana	Rw5G011870 Rw5G011910 Rw5G011990 Rw5G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	622
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	3 cut(s)	93, 290, 489
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	463
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	71
AdeI	CACNNNGTG	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	146, 173, 203, 512
AhlI	ACTAGT	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	432, 578
AluBI	AGCT	2 cut(s)	167, 320
AluI	AGCT	2 cut(s)	167, 320
Alw21I	GWGCWC	3 cut(s)	103, 142, 194
Alw44I	GTGCAC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	225, 463
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	4 cut(s)	11, 14, 287, 317
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	515, 608
BaeGI	GKGCMC	2 cut(s)	159, 194
BanII	GRGCYC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	3 cut(s)	103, 142, 194
BbvI	GCAGC	2 cut(s)	274, 329
BccI	CCATC	2 cut(s)	203, 300
BciT130I	CCWGG	2 cut(s)	434, 580
BclI	TGATCA	2 cut(s)	457, 556
BcuI	ACTAGT	1 cut(s)	251
BfaI	CTAG	3 cut(s)	20, 252, 474
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	5 cut(s)	12, 15, 288, 291, 318
BlpI	GCTNAGC	1 cut(s)	313
BlsI	GCNGC	5 cut(s)	13, 16, 289, 292, 319
Bme1390I	CCNGG	2 cut(s)	434, 580
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	434, 580
BmsI	GCATC	4 cut(s)	106, 119, 274, 430
BpiI	GAAGAC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	432, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	2 cut(s)	337, 460
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	434, 580
BseDI	CCNNGG	2 cut(s)	432, 627
BseGI	GGATG	1 cut(s)	655
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	2 cut(s)	337, 460
BseMII	CTCAG	2 cut(s)	376, 545
BseNI	ACTGG	1 cut(s)	346
BseSI	GKGCMC	2 cut(s)	159, 194
BseXI	GCAGC	2 cut(s)	274, 329
BshFI	GGCC	2 cut(s)	227, 465
BsiHKAI	GWGCWC	3 cut(s)	103, 142, 194
BslI	CCNNNNNNNGG	1 cut(s)	352
BsnI	GGCC	2 cut(s)	227, 465
Bsp1286I	GDGCHC	5 cut(s)	103, 136, 142, 159, 194
Bsp143I	GATC	4 cut(s)	148, 232, 457, 556
Bsp1720I	GCTNAGC	1 cut(s)	313
BspACI	CCGC	3 cut(s)	93, 290, 489
BspANI	GGCC	2 cut(s)	227, 465
BspCNI	CTCAG	2 cut(s)	375, 544
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	143
BspQI	GCTCTTC	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	337, 460
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	432, 627
BssMI	GATC	4 cut(s)	148, 232, 457, 556
BssNAI	GTATAC	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	627
Bst1107I	GTATAC	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	434, 580
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	91
BstACI	GRCGYC	1 cut(s)	71
BstAPI	GCANNNNNTGC	2 cut(s)	107, 116
BstC8I	GCNNGC	3 cut(s)	108, 190, 405
BstDEI	CTNAG	3 cut(s)	313, 362, 531
BstF5I	GGATG	1 cut(s)	655
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	4 cut(s)	151, 235, 460, 559
BstMBI	GATC	4 cut(s)	148, 232, 457, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 107, 116, 131
BstNI	CCWGG	2 cut(s)	434, 580
BstSCI	CCNGG	2 cut(s)	432, 578
BstSFI	CTRYAG	1 cut(s)	591
BstSLI	GKGCMC	2 cut(s)	159, 194
BstV1I	GCAGC	2 cut(s)	274, 329
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BstZ17I	GTATAC	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	227, 465
BtsCI	GGATG	1 cut(s)	655
BtsIMutI	CAGTG	4 cut(s)	84, 353, 370, 610
Cac8I	GCNNGC	3 cut(s)	108, 190, 405
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	542
CseI	GACGC	2 cut(s)	60, 612
CviAII	CATG	3 cut(s)	392, 461, 562
CviJI	RGCY	9 cut(s)	106, 134, 167, 227, 293, 312, 320, 345, 465
CviKI_1	RGCY	9 cut(s)	106, 134, 167, 227, 293, 312, 320, 345, 465
DdeI	CTNAG	3 cut(s)	313, 362, 531
DpnI	GATC	4 cut(s)	150, 234, 459, 558
DpnII	GATC	4 cut(s)	148, 232, 457, 556
DraIII	CACNNNGTG	1 cut(s)	90
DrdI	GACNNNNNNGTC	1 cut(s)	622
DseDI	GACNNNNNNGTC	1 cut(s)	622
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	627
Eco24I	GRGCYC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	432, 578
EcoT14I	CCWWGG	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	3 cut(s)	395, 464, 565
FalI	AAGNNNNNCTT	1 cut(s)	645
FatI	CATG	3 cut(s)	391, 460, 561
FbaI	TGATCA	2 cut(s)	457, 556
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	5 cut(s)	12, 15, 288, 291, 318
FokI	GGATG	1 cut(s)	662
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	5 cut(s)	12, 15, 288, 291, 318
FspBI	CTAG	3 cut(s)	20, 252, 474
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	5 cut(s)	12, 15, 288, 291, 318
HaeIII	GGCC	2 cut(s)	227, 465
HgaI	GACGC	2 cut(s)	60, 612
HhaI	GCGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	395, 464, 565
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HinfI	GANTC	2 cut(s)	5, 573
HphI	GGTGA	2 cut(s)	515, 608
Hpy166II	GTNNAC	4 cut(s)	192, 279, 479, 608
Hpy188I	TCNGA	4 cut(s)	76, 115, 273, 572
Hpy188III	TCNNGA	5 cut(s)	143, 200, 242, 392, 554
Hpy8I	GTNNAC	4 cut(s)	192, 279, 479, 608
HpyAV	CCTTC	2 cut(s)	60, 494
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	6 cut(s)	110, 125, 192, 330, 351, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 107, 116, 131
HpyF3I	CTNAG	3 cut(s)	313, 362, 531
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	395, 464, 565
HspAI	GCGC	1 cut(s)	540
Ksp22I	TGATCA	2 cut(s)	457, 556
Kzo9I	GATC	4 cut(s)	148, 232, 457, 556
LguI	GCTCTTC	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	131, 434
Lsp1109I	GCAGC	2 cut(s)	274, 329
LweI	GCATC	4 cut(s)	106, 119, 274, 430
MaeI	CTAG	3 cut(s)	20, 252, 474
MaeIII	GTNAC	2 cut(s)	247, 334
MalI	GATC	4 cut(s)	150, 234, 459, 558
MboI	GATC	4 cut(s)	148, 232, 457, 556
MboII	GAAGA	9 cut(s)	108, 158, 173, 215, 524, 647, 650, 653, 665
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	5 cut(s)	103, 136, 142, 159, 194
MluCI	AATT	3 cut(s)	77, 369, 644
MlyI	GAGTC	2 cut(s)	14, 567
MnlI	CCTC	2 cut(s)	178, 625
MroXI	GAANNNNTTC	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	320
MspR9I	CCNGG	2 cut(s)	434, 580
MvaI	CCWGG	2 cut(s)	434, 580
MwoI	GCNNNNNNNGC	4 cut(s)	20, 107, 116, 131
NdeII	GATC	4 cut(s)	148, 232, 457, 556
NlaIII	CATG	3 cut(s)	395, 464, 565
NlaIV	GGNNCC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	168
PkrI	GCNGC	5 cut(s)	13, 16, 289, 292, 319
PleI	GAGTC	2 cut(s)	13, 567
PpsI	GAGTC	2 cut(s)	13, 567
Psp6I	CCWGG	2 cut(s)	432, 578
PspGI	CCWGG	2 cut(s)	432, 578
PspN4I	GGNNCC	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	91
SatI	GCNGC	5 cut(s)	12, 15, 288, 291, 318
Sau3AI	GATC	4 cut(s)	148, 232, 457, 556
SchI	GAGTC	2 cut(s)	14, 567
ScrFI	CCNGG	2 cut(s)	434, 580
SduI	GDGCHC	5 cut(s)	103, 136, 142, 159, 194
SetI	ASST	7 cut(s)	169, 322, 384, 438, 505, 598, 663
SfaNI	GCATC	4 cut(s)	106, 119, 274, 430
SfcI	CTRYAG	1 cut(s)	591
SpeI	ACTAGT	1 cut(s)	251
Sse9I	AATT	3 cut(s)	77, 369, 644
SsiI	CCGC	3 cut(s)	93, 290, 489
SspMI	CTAG	3 cut(s)	20, 252, 474
StyD4I	CCNGG	2 cut(s)	432, 578
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	241, 438
TasI	AATT	3 cut(s)	77, 369, 644
TauI	GCSGC	1 cut(s)	293
TscAI	CASTG	4 cut(s)	91, 353, 370, 610
TseI	GCWGC	4 cut(s)	11, 14, 287, 317
TspDTI	ATGAA	3 cut(s)	60, 380, 666
TspRI	CASTG	4 cut(s)	91, 353, 370, 610
VneI	GTGCAC	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	3 cut(s)	20, 252, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.